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N Use By Plants
Nitrate Assimilation
Ammonia Assimilation
Glu, Gln, Asn, Gly, Ser
Asp, Ala, GABA
Val, Leu, Ileu, Thr, Lys
Pro, Arg, Orn
Non-protein AAs
Sulfate Assimilation
Cys, Met, AdoMet, ACC
His, Phe, Tyr, Tryp
Secondary Products
Onium Compounds
HORT640 - Metabolic Plant Physiology

References, Arabidopsis

(Pat) Heslop-Harrison JS. Planning for remodelling: nuclear architecture, chromatin and chromosomes. Trends Plant Sci. 8: 195-197 (2003).

Aarts MG, Hodge R, Kalantidis K, Florack D, Wilson ZA, Mulligan BJ, Stiekema WJ, Scott R, Pereira A. The Arabidopsis MALE STERILITY 2 protein shares similarity with reductases in elongation/condensation complexes. Plant J. 12: 615-623 (1997).

Aarts MG, Keijzer CJ, Stiekema WJ, Pereira A. Molecular characterization of the CER1 gene of Arabidopsis involved in epicuticular wax biosynthesis and pollen fertility. Plant Cell 7: 2115-2127 (1995).

Abdel-Ghany SE. Contribution of plastocyanin isoforms to photosynthesis and copper homeostasis in Arabidopsis thaliana grown at different copper regimes. Planta 229: 767-779 (2009).

Abdel-Ghany SE, Burkhead JL, Gogolin KA, Andres-Colas N, Bodecker JR, Puig S, Penarrubia L, Pilon M. AtCCS is a functional homolog of the yeast copper chaperone Ccs1/Lys7. FEBS Lett. 579: 2307-2312 (2005).

Abdel-Ghany SE, Muller-Moule P, Niyogi KK, Pilon M, Shikanai T. Two P-type ATPases are required for copper delivery in Arabidopsis thaliana chloroplasts. Plant Cell 17: 1233-1251 (2005).

Abdel-Ghany SE, Ye H, Garifullina GF, Zhang L, Pilon-Smits EA, Pilon M. Iron-sulfur cluster biogenesis in chloroplasts. Involvement of the scaffold protein CpIsca. Plant Physiol. 138: 161-172 (2005).

Abdulrazzak N, Pollet B, Ehlting J, Larsen K, Asnaghi C, Ronseau S, Proux C, Erhardt M, Seltzer V, Renou JP, Ullmann P, Pauly M, Lapierre C, Werck-Reichhart D. A coumaroyl-ester-3-hydroxylase insertion mutant reveals the existence of nonredundant meta-hydroxylation pathways and essential roles for phenolic precursors in cell expansion and plant growth. Plant Physiol. 140: 30-48 (2006).

Abe H, Ohnishi J, Narusaka M, Seo S, Narusaka Y, Tsuda S, Kobayashi M. Function of jasmonate in response and tolerance of Arabidopsis to thrip feeding. Plant Cell Physiol. 49: 68-80 (2008).

Abe H, Urao T, Ito T, Seki M, Shinozaki K, Yamaguchi-Shinozaki K. Arabidopsis AtMYC2 (bHLH) and AtMYB2 (MYB) function as transcriptional activators in abscisic acid signaling. Plant Cell 15: 63-78 (2003).

Abe K, Osakabe K, Ishikawa Y, Tagiri A, Yamanouchi H, Takyuu T, Yoshioka T, Ito T, Kobayashi M, Shinozaki K, Ichikawa H, Toki S. Inefficient double-strand DNA break repair is associated with increased fasciation in Arabidopsis BRCA2 mutants. J. Exp. Bot. 60: 2751-2761 (2009).

Abe K, Osakabe K, Nakayama S, Endo M, Tagiri A, Todoriki S, Ichikawa H, Toki S. Arabidopsis RAD51C gene is important for homologous recombination in meiosis and mitosis. Plant Physiol. 139: 896-908 (2005).

Abe M, Fujiwara M, Kurotani K, Yokoi S, Shimamoto K. Identification of dynamin as an interactor of rice GIGANTEA by tandem affinity purification (TAP). Plant Cell Physiol. 49: 420-432 (2008).

Abe T, Hashimoto T. Altered microtubule dynamics by expression of modified alpha-tubulin protein causes right-handed helical growth in transgenic Arabidopsis plants. Plant J. 43: 191-204 (2005).

Abel C, Clauss M, Schaub A, Gershenzon J, Tholl D. Floral and insect-induced volatile formation in Arabidopsis lyrata ssp. petraea, a perennial, outcrossing relative of A. thaliana. Planta 230: 1-11 (2009).

Abel S, Nguyen MD, Chow W, Theologis A. ACS4, a primary indoleacetic acid-responsive gene encoding 1-aminocyclopropane-1-carboxylate synthase in Arabidopsis thaliana. Structural characterization, expression in Escherichia coli, and expression characteristics in response to auxin. J. Biol. Chem. 270: 19093-19099 (1995).

Abraham E, Rigo G, Szekely G, Nagy R, Koncz C, Szabados L. Light-dependent induction of proline biosynthesis by abscisic acid and salt stress is inhibited by brassinosteroid in Arabidopsis. Plant Mol. Biol. 51: 363-372 (2003).

Abrahams S, Lee E, Walker AR, Tanner GJ, Larkin PJ, Ashton AR. The Arabidopsis TDS4 gene encodes leucoanthocyanidin dioxygenase (LDOX) and is essential for proanthocyanidin synthesis and vacuole development. Plant J. 35: 624-636 (2003).

Abrahams S, Tanner GJ, Larkin PJ, Ashton AR. Identification and biochemical characterization of mutants in the proanthocyanidin pathway in Arabidopsis. Plant Physiol. 130: 561-576 (2002).

Abreu ME, Munne-Bosch S. Salicylic acid deficiency in NahG transgenic lines and sid2 mutants increases seed yield in the annual plant Arabidopsis thaliana. J. Exp. Bot. 60: 1261-1271 (2009).

Abu-Abied M, Golomb L, Belausov E, Huang S, Geiger B, Kam Z, Staiger CJ, Sadot E. Identification of plant cytoskeleton-interacting proteins by screening for actin stress fiber association in mammalian fibroblasts. Plant J. 48: 367-379 (2006).

Abuqamar S, Chen X, Dhawan R, Bluhm B, Salmeron J, Lam S, Dietrich RA, Mengiste T. Expression profiling and mutant analysis reveals complex regulatory networks involved in Arabidopsis response to Botrytis infection. Plant J. 48: 28-44 (2006).

Acarkan A, Rossberg M, Koch M, Schmidt R. Comparative genome analysis reveals extensive conservation of genome organisation for Arabidopsis thaliana and Capsella rubella. Plant J. 23: 55-62 (2000).

Acevedo-Hernandez GJ, Leon P, Herrera-Estrella LR. Sugar and ABA responsiveness of a minimal RBCS light-responsive unit is mediated by direct binding of ABI4. Plant J. 43: 506-519 (2005).

Achard P, Cheng H, De Grauwe L, Decat J, Schoutteten H, Moritz T, Van Der Straeten D, Peng J, Harberd NP. Integration of plant responses to environmentally activated phytohormonal signals. Science 311: 91-94 (2006).

Achard P, Vriezen WH, Van Der Straeten D, Harberd NP. Ethylene regulates Arabidopsis development via the modulation of DELLA protein growth repressor function. Plant Cell 15: 2816-2825 (2003).

Acharya BR, Raina S, Maqbool SB, Jagadeeswaran G, Mosher SL, Appel HM, Schultz JC, Klessig DF, Raina R. Overexpression of CRK13, an Arabidopsis cysteine-rich receptor-like kinase, results in enhanced resistance to Pseudomonas syringae. Plant J. 50: 488-499 (2007).

Achkor H, Diaz M, Fernandez MR, Biosca JA, Pares X, Martinez MC. Enhanced formaldehyde detoxification by overexpression of glutathione-dependent formaldehyde dehydrogenase from Arabidopsis. Plant Physiol. 132: 2248-2255 (2003).

Acosta-Garcia G, Vielle-Calzada JP. A classical arabinogalactan protein is essential for the initiation of female gametogenesis in Arabidopsis. Plant Cell 16: 2614-2628 (2004).

Adachi S, Uchimiya H, Umeda M. Expression of B2-type cyclin-dependent kinase is controlled by protein degradation in Arabidopsis thaliana. Plant Cell Physiol. 47: 1683-1686 (2006).

Adam H, Jouannic S, Morcillo F, Verdeil JL, Duval Y, Tregear JW. Determination of flower structure in Elaeis guineensis: do palms use the same homeotic genes as other species? Ann. Bot. (Lond.) 100: 1-12 (2007).

Adam H, Jouannic S, Orieux Y, Morcillo F, Richaud F, Duval Y, Tregear JW. Functional characterization of MADS box genes involved in the determination of oil palm flower structure. J. Exp. Bot. 58: 1245-1259 (2007).

Adam H, Ouellet F, Kane NA, Agharbaoui Z, Major G, Tominaga Y, Sarhan F. Overexpression of TaVRN1 in Arabidopsis promotes early flowering and alters development. Plant Cell Physiol. 48: 1192-1206 (2007).

Adam Z, Rudella A, van Wijk KJ. Recent advances in the study of Clp, FtsH and other proteases located in chloroplasts. Curr. Opin. Plant Biol. 9: 234-240 (2006).

Adam Z, Zaltsman A, Sinvany-Villalobo G, Sakamoto W. FtsH proteases in chloroplasts and cyanobacteria. Physiol. Plant. 123: 386-390 (2005).

Adamczyk BJ, Fernandez DE. MIKC* MADS domain heterodimers are required for pollen maturation and tube growth in Arabidopsis. Plant Physiol. 149: 1713-1723 (2009).

Adamczyk BJ, Lehti-Shiu MD, Fernandez DE. The MADS domain factors AGL15 and AGL18 act redundantly as repressors of the floral transition in Arabidopsis. Plant J. 50: 1007-1019 (2007).

Adams-Phillips L, Barry C, Kannan P, Leclercq J, Bouzayen M, Giovannoni J. Evidence that CTR1-mediated ethylene signal transduction in tomato is encoded by a multigene family whose members display distinct regulatory features. Plant Mol. Biol. 54: 387-404 (2004).

Addepalli B, Xu R, Dattaroy T, Li B, Bass WT, Li QQ, Hunt AG. Disease resistance in plants that carry a feedback-regulated yeast poly(A) binding protein gene. Plant Mol. Biol. 61: 383-397 (2006).

Adham AR, Zolman BK, Millius A, Bartel B. Mutations in Arabidopsis acyl-CoA oxidase genes reveal distinct and overlapping roles in beta-oxidation. Plant J. 41: 859-874 (2005).

Adie BA, Perez-Perez J, Perez-Perez MM, Godoy M, Sanchez-Serrano JJ, Schmelz EA, Solano R. ABA is an essential signal for plant resistance to pathogens affecting JA biosynthesis and the activation of defenses in Arabidopsis. Plant Cell 19: 1665-1681 (2007).

Aeschbacher RA, Muller J, Boller T, Wiemken A. Purification of the trehalase GMTRE1 from soybean nodules and cloning of its cDNA. GMTRE1 is expressed at a low level in multiple tissues. Plant Physiol. 119: 489-496 (1999).

Agalou A, Purwantomo S, Overnas E, Johannesson H, Zhu X, Estiati A, de Kam RJ, Engstrom P, Slamet-Loedin IH, Zhu Z, Wang M, Xiong L, Meijer AH, Ouwerkerk PB. A genome-wide survey of HD-Zip genes in rice and analysis of drought-responsive family members. Plant Mol. Biol. 66: 87-103 (2008).

Agarwal M, Hao Y, Kapoor A, Dong CH, Fujii H, Zheng X, Zhu JK. A R2R3 type MYB transcription factor is involved in the cold regulation of CBF genes and in acquired freezing tolerance. J. Biol. Chem. 281: 37636-37645 (2006).

Agarwal M, Sahi C, Katiyar-Agarwal S, Agarwal S, Young T, Gallie DR, Sharma VM, Ganesan K, Grover A. Molecular characterization of rice hsp101: complementation of yeast hsp104 mutation by disaggregation of protein granules and differential expression in indica and japonica rice types. Plant Mol. Biol. 51: 543-553 (2003).

Agerbirk N, Petersen BL, Olsen CE, Halkier BA, Nielsen JK. 1,4-Dimethoxyglucobrassicin in Barbarea and 4-hydroxyglucobrassicin in Arabidopsis and Brassica. J. Agric. Food Chem. 49: 1502-1507 (2001).

Agrawal GK, Abe K, Yamazaki M, Miyao A, Hirochika H. Conservation of the E-function for floral organ identity in rice revealed by the analysis of tissue culture-induced loss-of-function mutants of the OsMADS1 gene. Plant Mol. Biol. 59: 125-135 (2005).

Agrawal GK, Yonekura M, Iwahashi Y, Iwahashi H, Rakwal R. System, trends and perspectives of proteomics in dicot plants. Part III: Unraveling the proteomes influenced by the environment, and at the levels of function and genetic relationships. J. Chromatogr. B. Analyt. Technol. Biomed. Life Sci. 815: 137-145 (2005).

Agrawal S, Kumar A, Srivastava V, Mishra BN. Cloning, expression, activity and folding studies of serine hydroxymethyltransferase: a target enzyme for cancer chemotherapy. J. Mol. Microbiol. Biotechnol. 6: 67-75 (2003).

Aguilar-Martinez JA, Poza-Carrion C, Cubas P. Arabidopsis BRANCHED1 acts as an integrator of branching signals within axillary buds. Plant Cell 19: 458-472 (2007).

Aharon R, Shahak Y, Wininger S, Bendov R, Kapulnik Y, Galili G. Overexpression of a plasma membrane aquaporin in transgenic tobacco improves plant vigor under favorable growth conditions but not under drought or salt stress. Plant Cell 15: 439-447 (2003).

Aharoni A, De Vos CH, Wein M, Sun Z, Greco R, Kroon A, Mol JN, O'Connell AP. The strawberry FaMYB1 transcription factor suppresses anthocyanin and flavonol accumulation in transgenic tobacco. Plant J. 28: 319-332 (2001).

Aharoni A, Dixit S, Jetter R, Thoenes E, Van Arkel G, Pereira A. The SHINE clade of AP2 domain transcription factors activates wax biosynthesis, alters cuticle properties, and confers drought tolerance when overexpressed in Arabidopsis. Plant Cell 16: 2463-2480 (2004).

Aharoni A, Giri AP, Deuerlein S, Griepink F, de Kogel WJ, Verstappen FW, Verhoeven HA, Jongsma MA, Schwab W, Bouwmeester HJ. Terpenoid metabolism in wild-type and transgenic Arabidopsis plants. Plant Cell 15: 2866-2884 (2003).

Ahearn KP, Johnson HA, Weigel D, Wagner DR. NFL1, a Nicotiana tabacum LEAFY-like gene, controls meristem initiation and floral structure. Plant Cell Physiol. 42: 1130-1139 (2001).

Ahlfors R, Brosche M, Kollist H, Kangasjarvi J. Nitric oxide modulates ozone-induced cell death, hormone biosynthesis and gene expression in Arabidopsis thaliana. Plant J. Nov 28 [Epub ahead of print] (2008).

Ahlfors R, Lang S, Overmyer K, Jaspers P, Brosche M, Tauriainen A, Kollist H, Tuominen H, Belles-Boix E, Piippo M, Inze D, Palva ET, Kangasjarvi J. Arabidopsis RADICAL-INDUCED CELL DEATH1 belongs to the WWE protein-protein interaction domain protein family and modulates abscisic acid, ethylene, and methyl jasmonate responses. Plant Cell 16: 1925-1937 (2004).

Ahlfors R, Macioszek V, Rudd J, Brosche M, Schlichting R, Scheel D, Kangasjarvi J. Stress hormone-independent activation and nuclear translocation of mitogen-activated protein kinases in Arabidopsis thaliana during ozone exposure. Plant J. 40: 512-522 (2004).

Ahmad A, Khan I, Anjum NA, Abrol YP, Iqbal M. Role of sulphate transporter systems in sulphur efficiency of mustard genotypes. Plant Sci. 169: 842-846 (2005).

Ahmad M, Galland P, Ritz T, Wiltschko R, Wiltschko W. Magnetic intensity affects cryptochrome-dependent responses in Arabidopsis thaliana. Planta 225: 615-624 (2007).

Ahmad M, Grancher N, Heil M, Black RC, Giovani B, Galland P, Lardemer D. Action spectrum for cryptochrome-dependent hypocotyl growth inhibition in Arabidopsis. Plant Physiol. 129: 774-785 (2002).

Ahmad M, Jarillo JA, Cashmore AR. Chimeric proteins between cr y1 and cr y2 Arabidopsis blue light photoreceptors indicate overlapping functions and varying protein stability. Plant Cell 10: 197-208 (1998).

Ahmad M, Jarillo JA, Smirnova O, Cashmore AR. Cryptochrome blue-light photoreceptors of Arabidopsis implicated in phototropism. Nature 392: 720-723 (1998).

Ahmed SU, Bar-Peled M, Raikhel NV. Cloning and subcellular location of an Arabidopsis receptor-like protein that shares common features with protein-sorting receptors of eukaryotic cells. Plant Physiol. 114: 325-336 (1997).

Ahn IP, Kim S, Lee YH. Vitamin B1 functions as an activator of plant disease resistance. Plant Physiol. 138: 1505-1515 (2005).

Ahn SJ, Shin R, Schachtman DP. Expression of KT/KUP genes in Arabidopsis and the role of root hairs in K+ uptake. Plant Physiol. 134: 1135-1145 (2004).

Ahsan N, Yoon HS, Jo J. Molecular cloning of a BcPGIP cDNA from Brassica campestris and its expression to several stresses. Plant Sci. 169: 1081-1089 (2005).

Aihara Y, Tabata R, Suzuki T, Shimazaki KI, Nagatani A. Molecular basis of the functional specificities of phototropin 1 and 2. Plant J. 56: 364-375 (2008).

Aivalakis G, Dimou M, Flemetakis E, Plati F, Katinakis P, Drossopoulos JB. Immunolocalization of carbonic anhydrase and phosphoenolpyruvate carboxylase in developing seeds of Medicago sativa. Plant Physiol. Biochem. 42: 181-186 (2004).

Ajjawi I, Rodriguez Milla MA, Cushman J, Shintani DK. Thiamin pyrophosphokinase is required for thiamin cofactor activation in Arabidopsis. Plant Mol. Biol. 65: 151-62 (2007).

Akama K, Akihiro T, Kitagawa M, Takaiwa F. Rice (Oryza sativa) contains a novel isoform of glutamate decarboxylase that lacks an authentic calmodulin-binding domain at the C-terminus. Biochim. Biophys. Acta 1522: 143-150 (2001).

Akamatsu T, Hanzawa Y, Ohtake Y, Takahashi T, Nishitani K, Komeda Y. Expression of endoxyloglucan transferase genes in acaulis mutants of Arabidopsis. Plant Physiol. 121: 715-722 (1999).

Al Khateeb WM, Schroeder DF. Overexpression of Arabidopsis damaged DNA binding protein 1A (DDB1A) enhances UV tolerance. Plant Mol. Biol. 70: 371-383 (2009).

Al-Ghazi Y, Muller B, Pinloche S, Tranbarger TJ, Nacry P, Rossignol M, Tardieu F, Doumas P. Temporal responses of Arabidopsis root architecture to phosphate starvation: evidence for the involvement of auxin signalling. Plant Cell Environ. 26: 1053-1066 (2003).

Al-Lahham A, Rohde V, Heim P, Leuchter R, Veeck J, Wunderlich C, Wolf K, Zimmermann M. Biosynthesis of phytochelatins in the fission yeast. Phytochelatin synthesis: a second role for the glutathione synthetase gene of Schizosaccharomyces pombe. Yeast 15: 385-396 (1999).

Alabadí D, Gallego-Bartolome J, Orlando L, García-Carcel L, Rubio V, Martinez C, Frigerio M, Iglesias-Pedraz JM, Espinosa A, Deng XW, Blazquez MA. Gibberellins modulate light signaling pathways to prevent Arabidopsis seedling de-etiolation in darkness. Plant J. 53: 324-335 (2008).

Alabadi D, Gil J, Blazquez MA, Garcia-Martinez JL. Gibberellins repress photomorphogenesis in darkness. Plant Physiol. 134: 1050-1057 (2004).

Albert S, Delseny M, Devic M. BANYULS, a novel negative regulator of flavonoid biosynthesis in the Arabidopsis seed coat. Plant J. 11: 289-299 (1997).

Alboresi A, Gestin C, Leydecker MT, Bedu M, Meyer C, Truong HN. Nitrate, a signal relieving seed dormancy in Arabidopsis. Plant Cell Environ. 28: 500-512 (2005).

Albrecht C, Russinova E, Hecht V, Baaijens E, de Vries S. The Arabidopsis thaliana SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASES1 and 2 control male sporogenesis. Plant Cell 17: 3337-3349 (2005).

Albrecht C, Russinova E, Kemmerling B, Kwaaitaal M, de Vries SC. Arabidopsis SOMATIC EMBRYOGENESIS RECEPTOR KINASE proteins serve brassinosteroid-dependent and -independent signaling pathways. Plant Physiol. 148: 611-619 (2008).

Albrecht V, Ingenfeld A, Apel K. Characterization of the snowy cotyledon 1 mutant of Arabidopsis thaliana: the impact of chloroplast elongation factor G on chloroplast development and plant vitality. Plant Mol. Biol. 60: 507-518 (2006).

Albrecht V, Ingenfeld A, Apel K. Snowy cotyledon 2: the identification of a zinc finger domain protein essential for chloroplast development in cotyledons but not in true leaves. Plant Mol. Biol. 66: 599-608 (2008).

Albrecht V, Weinl S, Blazevic D, D'Angelo C, Batistic O, Kolukisaoglu U, Bock R, Schulz B, Harter K, Kudla J. The calcium sensor CBL1 integrates plant responses to abiotic stresses. Plant J. 36: 457-470 (2003).

Alcazar R, Garcia-Martinez JL, Cuevas JC, Tiburcio AF, Altabella T. Overexpression of ADC2 in Arabidopsis induces dwarfism and late-flowering through GA deficiency. Plant J. 43: 425-436 (2005).

Alder A, Holdermann I, Beyer P, Al-Babili S. Carotenoid oxygenases involved in plant branching catalyze a highly specific, conserved apocarotenoid cleavage reaction. Biochem. J. 416: 289-296 (2008).

Aleman L, Kitamura J, Abdel-Mageed H, Lee J, Sun Y, Nakajima M, Ueguchi-Tanaka M, Matsuoka M, Allen RD. Functional analysis of cotton orthologs of GA signal transduction factors GID1 and SLR1. Plant Mol. Biol. 68: 1-16 (2008).

Alexander L, Grierson D. Ethylene biosynthesis and action in tomato: a model for climacteric fruit ripening. J. Exp. Bot. 53: 2039-2055 (2002).

Alexandersson E, Fraysse L, Sjovall-Larsen S, Gustavsson S, Fellert M, Karlsson M, Johanson U, Kjellbom P. Whole gene family expression and drought stress regulation of aquaporins. Plant Mol. Biol. 59: 469-484 (2005).

Alexandersson E, Saalbach G, Larsson C, Kjellbom P. Arabidopsis plasma membrane proteomics identifies components of transport, signal transduction and membrane trafficking. Plant Cell Physiol. 45: 1543-1556 (2004).

Alexandre CM, Hennig L. FLC or not FLC: the other side of vernalization. J. Exp. Bot. 59: 1127-1135 (2008).

Alexandrov NN, Brover VV, Freidin S, Troukhan ME, Tatarinova TV, Zhang H, Swaller TJ, Lu YP, Bouck J, Flavell RB, Feldmann KA. Insights into corn genes derived from large-scale cDNA sequencing. Plant Mol. Biol. 69: 179-194 (2009).

Alexandrov NN, Troukhan ME, Brover VV, Tatarinova T, Flavell RB, Feldmann KA. Features of Arabidopsis genes and genome discovered using full-length cDNAs. Plant Mol. Biol. 60: 69-85 (2006).

Alferez F, Zhong GY, Burns JK. A citrus abscission agent induces anoxia- and senescence-related gene expression in Arabidopsis. J. Exp. Bot. 58: 2451-2462 (2007).

Ali GS, Golovkin M, Reddy AS. Nuclear localization and in vivo dynamics of a plant-specific serine/arginine-rich protein. Plant J. 36: 883-893 (2003).

Ali GS, Prasad KV, Day I, Reddy AS. Ligand-dependent reduction in the membrane mobility of FLAGELLIN SENSITIVE2, an Arabidopsis receptor-like kinase. Plant Cell Physiol. 48: 1601-1611 (2007).

Ali R, Ma W, Lemtiri-Chlieh F, Tsaltas D, Leng Q, von Bodman S, Berkowitz GA. Death don't have no mercy and neither does calcium: Arabidopsis CYCLIC NUCLEOTIDE GATED CHANNEL2 and innate immunity. Plant Cell 19: 1081-1095 (2007).

Ali R, Zielinski RE, Berkowitz GA. Expression of plant cyclic nucleotide-gated cation channels in yeast. J. Exp. Bot. 57: 125-138 (2006).

Ali S, Taylor WC. The 3' non-coding region of a C4 photosynthesis gene increases transgene expression when combined with heterologous promoters. Plant Mol. Biol. 46: 325-333 (2001).

Ali-Rachedi S, Bouinot D, Wagner MH, Bonnet M, Sotta B, Grappin P, Jullien M. Changes in endogenous abscisic acid levels during dormancy release and maintenance of mature seeds: studies with the Cape Verde Islands ecotype, the dormant model of Arabidopsis thaliana. Planta 219: 479-488 (2004).

Alia, Hayashi H, Chen THH, Murata N. Transformation with a gene for choline oxidase enhances the cold tolerance of Arabidopsis during germination and early growth. Plant Cell Environ. 21: 232-239 (1998).

Alia, Hayashi H, Sakamoto A, Murata N. Enhancement of the tolerance of Arabidopsis to high temperatures by genetic engineering of the synthesis of glycinebetaine. Plant J. 16: 155-161 (1998).

Alia, Kondo Y, Sakamoto A, Nonaka H, Hayashi H, Saradhi PP, Chen TH, Murata N. Enhanced tolerance to light stress of transgenic Arabidopsis plants that express the codA gene for a bacterial choline oxidase. Plant Mol. Biol. 40: 279-288 (1999).

Alkhalfioui F, Renard M, Frendo P, Keichinger C, Meyer Y, Gelhaye E, Hirasawa M, Knaff DB, Ritzenthaler C, Montrichard F. A novel type of thioredoxin dedicated to symbiosis in legumes. Plant Physiol. 148: 424-435 (2008).

Alkio M, Tabuchi TM, Wang X, Colon-Carmona A. Stress responses to polycyclic aromatic hydrocarbons in Arabidopsis include growth inhibition and hypersensitive response-like symptoms. J. Exp. Bot. 56: 2983-2994 (2005).

Allan WL, Simpson JP, Clark SM, Shelp BJ. Gamma-hydroxybutyrate accumulation in Arabidopsis and tobacco plants is a general response to abiotic stress: putative regulation by redox balance and glyoxylate reductase isoforms. J. Exp. Bot. 59: 2555-2564 (2008).

Alleman M, Doctor J. Genomic imprinting in plants: observations and evolutionary implications. Plant Mol. Biol. 43: 147-161 (2000).

Allemeersch J, Durinck S, Vanderhaeghen R, Alard P, Maes R, Seeuws K, Bogaert T, Coddens K, Deschouwer K, Van Hummelen P, Vuylsteke M, Moreau Y, Kwekkeboom J, Wijfjes AH, May S, Beynon J, Hilson P, Kuiper MT. Benchmarking the CATMA microarray. A novel tool for Arabidopsis transcriptome analysis. Plant Physiol. 137: 588-601 (2005).

Allen GJ, Kuchitsu K, Chu SP, Murata Y, Schroeder JI. Arabidopsis abi1-1 and abi2-1 phosphatase mutations reduce abscisic acid-induced cytoplasmic calcium rises in guard cells. Plant Cell 11: 1785-1798 (1999).

Allen GJ, Murata Y, Chu SP, Nafisi M, Schroeder JI. Hypersensitivity of abscisic acid-induced cytosolic calcium increases in the Arabidopsis farnesyltransferase mutant era1-2. Plant Cell 14: 1649-1662 (2002).

Allen T, Ingles PJ, Praekelt U, Smith H, Whitelam GC. Phytochrome-mediated agravitropism in Arabidopsis hypocotyls requires GIL1 and confers a fitness advantage. Plant J. 46: 641-648 (2006).

Allen T, Koustenis A, Theodorou G, Somers DE, Kay SA, Whitelam GC, Devlin PF. Arabidopsis FHY3 specifically gates phytochrome signaling to the circadian clock. Plant Cell 18: 2506-2516 (2006).

Allenbach L, Poirier Y. Analysis of the alternative pathways for the beta-oxidation of unsaturated fatty acids using transgenic plants synthesizing polyhydroxyalkanoates in peroxisomes. Plant Physiol. 124: 1159-1168 (2000).

Allnutt GV, Rogers HJ, Francis D, Herbert RJ. A LEAFY-like gene in the long-day plant, Silene coeli-rosa is dramatically up-regulated in evoked shoot apical meristems but does not complement the Arabidopsis lfy mutant. J. Exp. Bot. 58: 2249-2259 (2007).

Almagro A, Lin SH, Tsay YF. Characterization of the Arabidopsis nitrate transporter NRT1.6 reveals a role of nitrate in early embryo development. Plant Cell 20: 3289-3299 (2008).

Almeras E, Stolz S, Vollenweider S, Reymond P, Mene-Saffrane L, Farmer EE. Reactive electrophile species activate defense gene expression in Arabidopsis. Plant J. 34: 205-216 (2003).

Aloni R, Aloni E, Langhans M, Ullrich CI. Role of auxin in regulating Arabidopsis flower development. Planta 223: 315-328 (2006).

Aloni R, Langhans M, Aloni E, Dreieicher E, Ullrich CI. Root-synthesized cytokinin in Arabidopsis is distributed in the shoot by the transpiration stream. J. Exp. Bot. 56: 1535-1544 (2005).

Aloni R, Langhans M, Aloni E, Ullrich CI. Role of cytokinin in the regulation of root gravitropism. Planta 220: 177-182 (2004).

Aloni R, Schwalm K, Langhans M, Ullrich CI. Gradual shifts in sites of free-auxin production during leaf-primordium development and their role in vascular differentiation and leaf morphogenesis in Arabidopsis. Planta 216: 841-853 (2003).

Alonso JM, Stepanova AN, Leisse TJ, Kim CJ, Chen H, Shinn P, Stevenson DK,. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301: 653-657 (2003).

Alonso-Blanco C, Gomez-Mena C, Llorente F, Koornneef M, Salinas J, Martinez-Zapater JM. Genetic and molecular analyses of natural variation indicate CBF2 as a candidate gene for underlying a freezing tolerance quantitative trait locus in Arabidopsis. Plant Physiol. 139: 1304-1312 (2005).

Alsheikh MK, Svensson JT, Randall SK. Phosphorylation regulated ion-binding is a property shared by the acidic subclass dehydrins. Plant Cell Environ. 28: 1114-1122 (2005).

Altmann T. Recent advances in brassinosteroid molecular genetics. Curr. Opin. Plant Biol. 1: 378-383 (1998).

Altmann T, Kossmann J. Photosynthesis and primary metabolism. Trends Plant Sci. 6: 93-94 (2001).

Aluru MR, Rodermel SR. Control of chloroplast redox by the IMMUTANS terminal oxidase. Physiol. Plant. 120: 4-11 (2004).

Aluru MR, Yu F, Fu A, Rodermel S. Arabidopsis variegation mutants: new insights into chloroplast biogenesis. J. Exp. Bot. 57: 1871-1881 (2006).

Aluru MR, Zola J, Foudree A, Rodermel SR. Chloroplast photooxidation-induced transcriptome reprogramming in Arabidopsis immutans white leaf sectors. Plant Physiol. 150: 904-923 (2009).

Alvarado MC, Zsigmond LM, Kovacs I, Cseplo A, Koncz C, Szabados LM. Gene trapping with firefly luciferase in Arabidopsis. Tagging of stress-responsive genes. Plant Physiol. 134: 18-27 (2004).

Alvarez JP, Pekker I, Goldshmidt A, Blum E, Amsellem Z, Eshed Y. Endogenous and synthetic microRNAs stimulate simultaneous, efficient, and localized regulation of multiple targets in diverse species. Plant Cell 18: 1134-1151 (2006).

Alvarez S, He Y, Chen S. Comparative investigations of the glucosinolate-myrosinase system in Arabidopsis suspension cells and hypocotyls. Plant Cell Physiol. 49: 324-333 (2008).

Alvarez-Buylla ER, Garcia-Ponce B, Garay-Arroyo A. Unique and redundant functional domains of APETALA1 and CAULIFLOWER, two recently duplicated Arabidopsis thaliana floral MADS-box genes. J. Exp. Bot. 57: 3099-3107 (2006).

Alvey L, Harberd NP. DELLA proteins: integrators of multiple plant growth regulatory inputs?. Physiol. Plant. 123: 153-160 (2005).

Amann K, Lezhneva L, Wanner G, Herrmann RG, Meurer J. ACCUMULATION OF PHOTOSYSTEM ONE1, a member of a novel gene family, is required for accumulation of [4Fe-4S] cluster-containing chloroplast complexes and antenna proteins. Plant Cell 16: 3084-3097 (2004).

Amaya I, Ratcliffe OJ, Bradley DJ. Expression of CENTRORADIALIS (CEN) and CEN-like genes in tobacco reveals a conserved mechanism controlling phase change in diverse species. Plant Cell 11: 1405-1418 (1999).

Ambikapathy J, Marshall JS, Hocart CH, Hardham AR. The role of proline in osmoregulation in Phytophthora nicotianae. Fungal Genet. Biol. 35: 287-299 (2002).

Amin P, Sy DA, Pilgrim ML, Parry DH, Nussaume L, Hoffman NE. Arabidopsis mutants lacking the 43- and 54-kilodalton subunits of the chloroplast signal recognition particle have distinct phenotypes. Plant Physiol. 121: 61-70 (1999).

Amira G, Ifat M, Tal A, Hana B, Shmuel G, Rachel A. Soluble methionine enhances accumulation of a 15 kDa zein, a methionine-rich storage protein, in transgenic alfalfa but not in transgenic tobacco plants. J. Exp. Bot. 56: 2443-2452 (2005).

Amirjani MR, Sundqvist C. Regeneration of protochlorophyllide in green and greening leaves of plants with varying proportions of protochlorophyllide forms in darkness. Physiol. Plant. 121: 377-390 (2004).

Amme S, Matros A, Schlesier B, Mock HP. Proteome analysis of cold stress response in Arabidopsis thaliana using DIGE-technology. J. Exp. Bot. 57: 1537-1546 (2006).

Ampomah-Dwamena C, Morris BA, Sutherland P, Veit B, Yao JL. Down-regulation of TM29, a tomato SEPALLATA homolog, causes parthenocarpic fruit development and floral reversion. Plant Physiol. 130: 605-617 (2002).

An R, Chen QJ, Chai MF, Lu PL, Su Z, Qin ZX, Chen J, Wang XC. AtNHX8, a member of the monovalent cation: proton antiporter-1 family in Arabidopsis thaliana, encodes a putative Li/H antiporter. Plant J. 49: 718-728 (2007).

An SH, Choi HW, Hwang IS, Hong JK, Hwang BK. A novel pepper membrane-located receptor-like protein gene CaMRP1 is required for disease susceptibility, methyl jasmonate insensitivity and salt tolerance. Plant Mol. Biol. 67: 519-533 (2008).

Anand A, Krichevsky A, Schornack S, Lahaye T, Tzfira T, Tang Y, Citovsky V, Mysore KS. Arabidopsis VIRE2 INTERACTING PROTEIN2 is required for Agrobacterium T-DNA integration in plants. Plant Cell 19: 1695-1708 (2007).

Ananieva K, Malbeck J, Kaminek M, van Staden J. Methyl jasmonate down-regulates endogenous cytokinin levels in cotyledons of Cucurbita pepo (zucchini) seedlings. Physiol. Plant. 122: 496-503 (2004).

Andeme Ondzighi C, Christopher DA, Cho EJ, Chang SC, Staehelin LA. Arabidopsis protein disulfide isomerase-5 inhibits cysteine proteases during trafficking to vacuoles before programmed cell death of the endothelium in developing seeds. Plant Cell 20: 2205-2220 (2008).

Andeme-Onzighi C, Sivaguru M, Judy-March J, Baskin TI, Driouich A. The reb1-1 mutation of Arabidopsis alters the morphology of trichoblasts, the expression of arabinogalactan-proteins and the organization of cortical microtubules. Planta 215: 949-958 (2002).

Andersen SU, Algreen-Petersen RG, Hoedl M, Jurkiewicz A, Cvitanich C, Braunschweig U, Schauser L, Oh SA, Twell D, Jensen EO. The conserved cysteine-rich domain of a tesmin/TSO1-like protein binds zinc in vitro and TSO1 is required for both male and female fertility in Arabidopsis thaliana. J. Exp. Bot. 58: 3657-3670 (2007).

Anderson CM, Wagner TA, Perret M, He ZH, He D, Kohorn BD. WAKs: cell wall-associated kinases linking the cytoplasm to the extracellular matrix. Plant Mol. Biol. 47: 197-206 (2001).

Anderson HJ, Vonarx EJ, Pastushok L, Nakagawa M, Katafuchi A, Gruz P, Di Rubbo A, Grice DM, Osmond MJ, Sakamoto AN, Nohmi T, Xiao W, Kunz BA. Arabidopsis thaliana Y-family DNA polymerase eta catalyses translesion synthesis and interacts functionally with PCNA2. Plant J. 55: 895-908 (2008).

Anderson JC, Pascuzzi PE, Xiao F, Sessa G, Martin GB. Host-mediated phosphorylation of type III effector AvrPto promotes Pseudomonas virulence and avirulence in tomato. Plant Cell 18: 502-514 (2006).

Anderson JC, Peck SC. A simple and rapid technique for detecting protein phosphorylation using one-dimensional isoelectric focusing gels and immunoblot analysis. Plant J. 55: 881-885 (2008).

Anderson JP, Badruzsaufari E, Schenk PM, Manners JM, Desmond OJ, Ehlert C, Maclean DJ, Ebert PR, Kazan K. Antagonistic interaction between abscisic acid and jasmonate-ethylene signaling pathways modulates defense gene expression and disease resistance in Arabidopsis. Plant Cell 16: 3460-3479 (2004).

Anderson MB, Folta K, Warpeha KM, Gibbons J, Gao J, Kaufman LS. Blue light-directed destabilization of the pea Lhcb1*4 transcript depends on sequences within the 5' untranslated region. Plant Cell 11: 1579-1590 (1999).

Andersson CR, Helliwell CA, Bagnall DJ, Hughes TP, Finnegan EJ, Peacock WJ, Dennis ES. The FLX gene of Arabidopsis is required for FRI-dependent activation of FLC expression. Plant Cell Physiol. 49: 191-200 (2008).

Andersson J, Wentworth M, Walters RG, Howard CA, Ruban AV, Horton P, Jansson S. Absence of the Lhcb1 and Lhcb2 proteins of the light-harvesting complex of photosystem II - effects on photosynthesis, grana stacking and fitness. Plant J. 35: 350-361 (2003).

Andersson MX, Kourtchenko O, Dangl JL, Mackey D, Ellerstrom M. Phospholipase-dependent signalling during the AvrRpm1- and AvrRpt2-induced disease resistance responses in Arabidopsis thaliana. Plant J. 47: 947-959 (2006).

Andersson MX, Stridh MH, Larsson KE, Lijenberg C, Sandelius AS. Phosphate-deficient oat replaces a major portion of the plasma membrane phospholipids with the galactolipid digalactosyldiacylglycerol. FEBS Lett. 537: 128-132 (2003).

Andersson U, Heddad M, Adamska I. Light stress-induced one-helix protein of the chlorophyll a/b-binding family associated with photosystem I. Plant Physiol. 132: 811-820 (2003).

Andersson-Gunneras S, Mellerowicz EJ, Love J, Segerman B, Ohmiya Y, Coutinho PM, Nilsson P, Henrissat B, Moritz T, Sundberg B. Biosynthesis of cellulose-enriched tension wood in Populus: global analysis of transcripts and metabolites identifies biochemical and developmental regulators in secondary wall biosynthesis. Plant J. 45: 144-165 (2006).

Ando S, Tsushima S, Kamachi S, Konagaya KI, Tabei Y. Alternative transcription initiation of the nitrilase gene (BrNIT2) caused by infection with Plasmodiophora brassicae Woron. in Chinese cabbage (Brassica rapa L.). Plant Mol. Biol. 68: 557-569 (2008).

Andre C, Froehlich JE, Moll MR, Benning C. A heteromeric plastidic pyruvate kinase complex involved in seed oil biosynthesis in Arabidopsis. Plant Cell 19: 2006-2022 (2007).

Andreasson E, Jorgensen LB, Hoglund AS, Rask L, Meijer J. Different myrosinase and idioblast distribution in Arabidopsis and Brassica napus. Plant Physiol. 127: 1750-1763 (2001).

Andreasson E, Taipalensuu J, Rask L, Meijer J. Age-dependent wound induction of a myrosinase-associated protein from oilseed rape (Brassica napus). Plant Mol. Biol. 41: 171-180 (1999).

Andres-Colas N, Sancenon V, Rodriguez-Navarro S, Mayo S, Thiele DJ, Ecker JR, Puig S, Penarrubia L. The Arabidopsis heavy metal P-type ATPase HMA5 interacts with metallochaperones and functions in copper detoxification of roots. Plant J. 45: 225-236 (2006).

Anil VS, Rajkumar P, Kumar P, Mathew MK. A plant Ca2+ pump, ACA2, relieves salt hypersensitivity in yeast. Modulation of cytosolic calcium signature and activation of adaptive Na+ homeostasis. J. Biol. Chem. 283: 3497-3506 (2008).

Anoop VM, Basu U, McCammon MT, McAlister-Henn L, Taylor GJ. Modulation of citrate metabolism alters aluminum tolerance in yeast and transgenic canola overexpressing a mitochondrial citrate synthase. Plant Physiol. 132: 2205-2217 (2003).

Ansari MI, Lee RH, Chen SCG. A novel senescence-associated gene encoding gamma-aminobutyric acid (GABA): pyruvate transaminase is upregulated during rice leaf senescence. Physiol. Plant. 123: 1-8 (2005).

Anthony RG, Khan S, Costa J, Pais MS, Bogre L. The Arabidopsis protein kinase PTI1-2 is activated by convergent phosphatidic acid and oxidative stress signaling pathways downstream of PDK1 and OXI1. J. Biol. Chem. 281: 37536-37546 (2006).

Antoine W, Stewart JM, de los Reyes BG. The rice homolog of the sodium/lithium tolerance gene functions as molecular chaperon in vitro. Physiol. Plant. 125: 299-310 (2005).

Antony E, Taybi T, Courbot M, Mugford ST, Smith JA, Borland AM. Cloning, localization and expression analysis of vacuolar sugar transporters in the CAM plant Ananas comosus (pineapple). J. Exp. Bot. 59: 1895-1908 (2008).

Antosiewicz DM, Purugganan MM, Polisensky DH, Braam J. Cellular localization of Arabidopsis xyloglucan endotransglycosylase-related proteins during development and after wind stimulation. Plant Physiol. 115: 1319-1328 (1997).

Aoki K, Ogata Y, Shibata D. Approaches for extracting practical information from gene co-expression networks in plant biology. Plant Cell Physiol. 48: 381-390 (2007).

Aparicio F, Thomas CL, Lederer C, Niu Y, Wang D, Maule AJ. Virus induction of heat shock protein 70 reflects a general response to protein accumulation in the plant cytosol. Plant Physiol. 138: 529-536 (2005).

Apchelimov AA, Soldatova OP, Ezhova TA, Grimm B, Shestakov SV. The analysis of the ChlI 1 and ChlI 2 genes using acifluorfen-resistant mutant of Arabidopsis thaliana. Planta 225: 935-943 (2007).

Apone F, Alyeshmerni N, Wiens K, Chalmers D, Chrispeels MJ, Colucci G. The G-protein-coupled receptor GCR1 regulates DNA synthesis through activation of phosphatidylinositol-specific phospholipase C. Plant Physiol. 133: 571-579 (2003).

Apse MP, Sottosanto JB, Blumwald E. Vacuolar cation/H+ exchange, ion homeostasis, and leaf development are altered in a T-DNA insertional mutant of AtNHX1, the Arabidopsis vacuolar Na+/H+ antiporter. Plant J. 36: 229-239 (2003).

Apuya NR, Yadegari R, Fischer RL, Harada JH, Goldberg RB. RASPBERRY3 gene encodes a novel protein important for embryo development. Plant Physiol. 129: 691-705 (2002).

Apuya NR, Yadegari R, Fischer RL, Harada JJ, Zimmerman JL, Goldberg RB. The Arabidopsis embryo mutant schlepperless has a defect in the chaperonin-60alpha gene. Plant Physiol. 126: 717-730 (2001).

Arai Y, Hayashi M, Nishimura M. Proteomic identification and characterization of a novel peroxisomal adenine nucleotide transporter supplying ATP for fatty acid beta-oxidation in soybean and Arabidopsis. Plant Cell 20: 3227-3240 (2008).

Aranzana MJ, Kim S, Zhao K, Bakker E, Horton M, Jakob K, Lister C, Molitor J, Shindo C, Tang C, Toomajian C, Traw B, Zheng H, Bergelson J, Dean C, Marjoram P, Nordborg M. Genome-wide association mapping in Arabidopsis identifies previously known flowering time and pathogen resistance genes. PLoS Genet. 1: e60 (2005).

Arazi T, Baum G, Snedden WA, Shelp BJ, Fromm H. Molecular and biochemical analysis of calmodulin interactions with the calmodulin-binding domain of plant glutamate decarboxylase. Plant Physiol. 108: 551-561 (1995).

Arazi T, Talmor-Neiman M, Stav R, Riese M, Huijser P, Baulcombe DC. Cloning and characterization of micro-RNAs from moss. Plant J. 43: 837-848 (2005).

Archacki R, Sarnowski TJ, Halibart-Puzio J, Brzeska K, Buszewicz D, Prymakowska-Bosak M, Koncz C, Jerzmanowski A. Genetic analysis of functional redundancy of BRM ATPase and ATSWI3C subunits of Arabidopsis SWI/SNF chromatin remodelling complexes. Planta 229: 1281-1292 (2009).

Arciga-Reyes L, Wootton L, Kieffer M, Davies B. UPF1 is required for nonsense-mediated mRNA decay (NMD) and RNAi in Arabidopsis. Plant J. 47: 480-489 (2006).

Arenas-Mena C, Raynal M, Borrell A, Varoquaux F, Cutanda MC, Stacy RA, Pages M, Delseny M, Culianez-Macia FA. Expression and cellular localization of Atrab28 during Arabidopsis embryogenesis. Plant Mol. Biol. 40: 355-363 (1999).

Arend M, Stinzing A, Wind C, Langer K, Latz A, Ache P, Fromm J, Hedrich R. Polar-localised poplar K(+) channel capable of controlling electrical properties of wood-forming cells. Planta 223: 140-148 (2005).

Argyros RD, Mathews DE, Chiang YH, Palmer CM, Thibault DM, Etheridge N, Argyros DA, Mason MG, Kieber JJ, Schaller GE. Type B response regulators of Arabidopsis play key roles in cytokinin signaling and plant development. Plant Cell 20: 2102-2116 (2008).

Ariizumi T, Hatakeyama K, Hinata K, Inatsugi R, Nishida I, Sato S, Kato T, Tabata S, Toriyama K. Disruption of the novel plant protein NEF1 affects lipid accumulation in the plastids of the tapetum and exine formation of pollen, resulting in male sterility in Arabidopsis thaliana. Plant J. 39: 170-181 (2004).

Ariizumi T, Hatakeyama K, Hinata K, Sato S, Kato T, Tabata S, Toriyama K. A novel male-sterile mutant of Arabidopsis thaliana, faceless pollen-1, produces pollen with a smooth surface and an acetolysis-sensitive exine. Plant Mol. Biol. 53: 107-116 (2003).

Ariizumi T, Kawanabe T, Hatakeyama K, Sato S, Kato T, Tabata S, Toriyama K. Ultrastructural characterization of exine development of the transient defective exine 1 mutant suggests the existence of a factor involved in constructing reticulate exine architecture from sporopollenin aggregates. Plant Cell Physiol. 49: 58-67 (2008).

Ariizumi T, Steber CM. Seed germination of GA-insensitive sleepy1 mutants does not require RGL2 protein disappearance in Arabidopsis. Plant Cell 19: 791-804 (2007).

Arimura SI, Fujimoto M, Doniwa Y, Kadoya N, Nakazono M, Sakamoto W, Tsutsumi N. Arabidopsis ELONGATED MITOCHONDRIA1 is required for localization of DYNAMIN-RELATED PROTEIN3A to mitochondrial fission sites. Plant Cell 20: 1555-1566 (2008).

Arisi AC, Cornic G, Jouanin L, Foyer CH. Overexpression of iron superoxide dismutase in transformed poplar modifies the regulation of photosynthesis at low CO2 partial pressures or following exposure to the prooxidant herbicide methyl viologen. Plant Physiol. 117: 565-574 (1998).

Armengaud P, Breitling R, Amtmann A. The potassium-dependent transcriptome of Arabidopsis reveals a prominent role of jasmonic acid in nutrient signaling. Plant Physiol. 136: 2556-2576 (2004).

Armengaud P, Sulpice R, Miller AJ, Stitt M, Amtmann A, Gibon Y. Multilevel analysis of primary metabolism provides new insights into the role of potassium nutrition for glycolysis and nitrogen assimilation in Arabidopsis roots. Plant Physiol. 150: 772-785 (2009).

Armstrong AF, Badger MR, Day DA, Barthet MM, Smith PM, Millar AH, Whelan J, Atkin OK. Dynamic changes in the mitochondrial electron transport chain underpinning cold acclimation of leaf respiration. Plant Cell Environ. 31: 1156-1169 (2008).

Armstrong AF, Logan DC, Tobin AK, O'Toole P, Atkin OK. Heterogeneity of plant mitochondrial responses underpinning respiratory acclimation to the cold in Arabidopsis thaliana leaves. Plant Cell Environ. 29: 940-949 (2006).

Armstrong AF, Wardlaw KD, Atkin OK. Assessing the relationship between respiratory acclimation to the cold and photosystem II redox poise in Arabidopsis thaliana. Plant Cell Environ. 30: 1513-1522 (2007).

Armstrong GA, Runge S, Frick G, Sperling U, Apel K. Identification of NADPH:protochlorophyllide oxidoreductases A and B: a branched pathway for light-dependent chlorophyll biosynthesis in Arabidopsis thaliana. Plant Physiol. 108: 1505-1517 (1995).

Armstrong SJ, Jones GH. Meiotic cytology and chromosome behaviour in wild-type Arabidopsis thaliana. J. Exp. Bot. 54: 1-10 (2003).

Arnal N, Alban C, Quadrado M, Grandjean O, Mireau H. The Arabidopsis Bio2 protein requires mitochondrial targeting for activity. Plant Mol. Biol. 62: 471-479 (2006).

Aronsson H, Boij P, Patel R, Wardle A, Topel M, Jarvis P. Toc64/OEP64 is not essential for the efficient import of proteins into chloroplasts in Arabidopsis thaliana. Plant J. 52: 53-68 (2007).

Aronsson H, Jarvis P. A simple method for isolating import-competent Arabidopsis chloroplasts. FEBS Lett. 529: 215-220 (2002).

Aronsson H, Schottler MA, Kelly AA, Sundqvist C, Dormann P, Karim S, Jarvis P. Monogalactosyldiacylglycerol deficiency in Arabidopsis thaliana affects pigment composition in the prolamellar body and impairs thylakoid membrane energization and photoprotection in leaves. Plant Physiol. 148: 580-592 (2008).

Arrighi JF, Barre A, Ben Amor B, Bersoult A, Soriano LC, Mirabella R, de Carvalho-Niebel F, Journet EP, Gherardi M, Huguet T, Geurts R, Denarie J, Rouge P, Gough C. The Medicago truncatula lysine motif-receptor-like kinase gene family includes NFP and new nodule-expressed genes. Plant Physiol. 142: 265-279 (2006).

Arrivault S, Guenther M, Ivakov A, Feil R, Vosloh D, van Dongen JT, Sulpice R, Stitt M. Use of reverse-phase liquid chromatography, linked to tandem mass spectrometry, to profile the Calvin cycle and other metabolic intermediates in Arabidopsis rosettes at different carbon dioxide concentrations. Plant J. 59: 826-839 (2009).

Arrivault S, Senger T, Kramer U. The Arabidopsis metal tolerance protein AtMTP3 maintains metal homeostasis by mediating Zn exclusion from the shoot under Fe deficiency and Zn oversupply. Plant J. 46: 861-879 (2006).

Arroyo A, Bossi F, Finkelstein RR, Leon P. Three genes that affect sugar sensing (Abscisic Acid Insensitive 4, Abscisic Acid Insensitive 5, and Constitutive Triple Response 1) are differentially regulated by glucose in Arabidopsis. Plant Physiol. 133: 231-242 (2003).

Arsovski AA, Popma TM, Haughn GW, Carpita NC, McCann MC, Western TL. AtBXL1 encodes a bifunctional beta-D-xylosidase/alpha-L-arabinofuranosidase required for pectic arabinan modification in Arabidopsis mucilage secretory cells. Plant Physiol. 150: 1219-1234 (2009).

Arsovski AA, Villota MM, Rowland O, Subramaniam R, Western TL. MUM ENHANCERS are important for seed coat mucilage production and mucilage secretory cell differentiation in Arabidopsis thaliana. J. Exp. Bot. 60: 2601-2612 (2009).

Arteca JM, Arteca RN. A multi-responsive gene encoding 1-aminocyclopropane-1-carboxylate synthase (ACS6) in mature Arabidopsis leaves. Plant Mol. Biol. 39: 209-219 (1999).

Arteca RN, Arteca JM. Effects of brassinosteroid, auxin, and cytokinin on ethylene production in Arabidopsis thaliana plants. J. Exp. Bot. 59: 3019-3026 (2008).

Asai T, Stone JM, Heard JE, Kovtun Y, Yorgey P, Sheen J, Ausubel FM. Fumonisin B1-induced cell death in Arabidopsis protoplasts requires jasmonate-, ethylene-, and salicylate-dependent signaling pathways. Plant Cell 12: 1823-1836 (2000).

Asakura Y, Barkan A. Arabidopsis orthologs of maize chloroplast splicing factors promote splicing of orthologous and species-specific group II introns. Plant Physiol. 142: 1656-1663 (2006).

Asakura Y, Kikuchi S, Nakai M. Non-identical contributions of two membrane-bound cpSRP components, cpFtsY and Alb3, to thylakoid biogenesis. Plant J. 56: 1007-1017 (2008).

Asami T, Min YK, Nagata N, Yamagishi K, Takatsuto S, Fujioka S, Murofushi N, Yamaguchi I, Yoshida S. Characterization of brassinazole, a triazole-type brassinosteroid biosynthesis inhibitor. Plant Physiol. 123: 93-100 (2000).

Asamizu E, Nakamura Y, Sato S, Tabata S. Characteristics of the Lotus japonicus gene repertoire deduced from large-scale expressed sequence tag (EST) analysis. Plant Mol. Biol. 54: 405-414 (2004).

Asamizu E, Shimoda Y, Kouchi H, Tabata S, Sato S. A positive regulatory role for LjERF1 in the nodulation process is revealed by systematic analysis of nodule-associated transcription factors of Lotus japonicus. Plant Physiol. 147: 2030-2040 (2008).

Asano T, Masuda D, Yasuda M, Nakashita H, Kudo T, Kimura M, Yamaguchi K, Nishiuchi T. AtNFXL1, an Arabidopsis homologue of the human transcription factor NF-X1, functions as a negative regulator of the trichothecene phytotoxin-induced defense response. Plant J. 53: 450-464 (2008).

Asano T, Yoshioka Y, Kurei S, Sakamoto W, Machida Y; Sodmergen. A mutation of the CRUMPLED LEAF gene that encodes a protein localized in the outer envelope membrane of plastids affects the pattern of cell division, cell differentiation, and plastid division in Arabidopsis. Plant J. 38: 448-459 (2004).

Ascencio-Ibanez JT, Sozzani R, Lee TJ, Chu TM, Wolfinger RD, Cella R, Hanley-Bowdoin L. Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. Plant Physiol. 148: 436-454 (2008).

Ascenzi R, Gantt JS. A drought-stress-inducible histone gene in Arabidopsis thaliana is a member of a distinct class of plant linker histone variants. Plant Mol. Biol. 34: 629-641 (1997).

Ascenzi R, Gantt JS. Molecular genetic analysis of the drought-inducible linker histone variant in Arabidopsis thaliana. Plant Mol. Biol. 41: 159-169 (1999).

Ashfield T, Ong LE, Nobuta K, Schneider CM, Innes RW. Convergent evolution of disease resistance gene specificity in two flowering plant families. Plant Cell 16: 309-318 (2004).

Assaad FF. Of weeds and men: what genomes teach us about plant cell biology. Curr. Opin. Plant Biol. 4: 478-487 (2001).

Assmann SM. Plant G proteins, phytohormones, and plasticity: three questions and a speculation. Sci. STKE 2004: re20 (2004).

Assmann SM. OPEN STOMATA1 opens the door to ABA signaling in Arabidopsis guard cells. Trends Plant Sci. 8: 151-153 (2003).

Assmann SM, Snyder JA, Lee Y-RL. ABA-deficient (aba1) and ABA-insensitive (abi1-1, abi2-1) mutants of Arabidopsis have a wild-type stomatal response to humidity. Plant Cell Environ. 23: 387-395 (2000).

Assuncao AG, Pieper B, Vromans J, Lindhout P, Aarts MG, Schat H. Construction of a genetic linkage map of Thlaspi caerulescens and quantitative trait loci analysis of zinc accumulation. New Phytol. 170: 21-32 (2006).

Assuncao AGL, Da Costa Martins P, De Folter S, Vooijs R, Schat H, Aarts MGM. Elevated expression of metal transporter genes in three accessions of the metal hyperaccumulator Thlaspi caerulescens. Plant Cell Environ. 24: 217-226 (2001).

Astot C, Dolezal K, Nordstrom A, Wang Q, Kunkel T, Moritz T, Chua NH, Sandberg G. An alternative cytokinin biosynthesis pathway Proc. Natl. Acad. Sci. U.S.A. 97: 14778-14783 (2000).

Atanassov I, Russinova E, Antonov L, Atanassov A. Expression of an anther-specific chalcone synthase-like gene is correlated with uninucleate microspore development in Nicotiana sylvestris. Plant Mol. Biol. 38: 1169-1178 (1998).

Atanassova R, Flenet M, Gigot C, Chaubet N. Functional analysis of the promoter region of a maize (Zea mays L.) H3 histone gene in transgenic Arabidopsis thaliana. Plant Mol. Biol. 37: 275-285 (1998).

Athwal GS, Huber SC. Divalent cations and polyamines bind to loop 8 of 14-3-3 proteins, modulating their interaction with phosphorylated nitrate reductase. Plant J. 29: 119-129 (2002).

Atta R, Laurens L, Boucheron-Dubuisson E, Guivarc'h A, Carnero E, Giraudat-Pautot V, Rech P, Chriqui D. Pluripotency of Arabidopsis xylem pericycle underlies shoot regeneration from root and hypocotyl explants grown in vitro. Plant J. 57: 626-644 (2009).

Attallah CV, Welchen E, Pujol C, Bonnard G, Gonzalez DH. Characterization of Arabidopsis thaliana genes encoding functional homologues of the yeast metal chaperone Cox19p, involved in cytochrome c oxidase biogenesis. Plant Mol. Biol. 65: 343-355 (2007).

Attaran E, Zeier TE, Griebel T, Zeier J. Methyl salicylate production and jasmonate signaling are not essential for systemic acquired resistance in Arabidopsis. Plant Cell 21: 954-971 (2009).

Attieh J, Djiana R, Koonjul P, Etienne C, Sparace SA, Saini HS. Cloning and functional expression of two plant thiol methyltransferases: a new class of enzymes involved in the biosynthesis of sulfur volatiles. Plant Mol. Biol. 50: 511-521 (2002).

Attieh J, Sparace SA, Saini HS. Purification and properties of multiple isoforms of a novel thiol methyltransferase involved in the production of volatile sulfur compounds from Brassica oleracea. Arch. Biochem. Biophys. 380: 257-266 (2000).

Aubourg S, Boudet N, Kreis M, Lecharny A. In Arabidopsis thaliana, 1% of the genome codes for a novel protein family unique to plants. Plant Mol. Biol. 42: 603-613 (2000).

Aubry C, Morere-Le Paven MC, Chateigner-Boutin AL, Teulat-Merah B, Ricoult C, Peltier D, Jalouzot R, Limami AM. A gene encoding a germin-like protein, identified by a cDNA-AFLP approach, is specifically expressed during germination of Phaseolus vulgaris. Planta 217: 466-475 (2003).

Aubry S, Mani J, Hortensteiner S. Stay-green protein, defective in Mendel's green cotyledon mutant, acts independent and upstream of pheophorbide a oxygenase in the chlorophyll catabolic pathway. Plant Mol. Biol. 67: 243-256 (2008).

Audran C, Liotenberg S, Gonneau M, North H, Frey A, Tap-Waksman K, Vartanian N, Marion-Poll A. Localisation and expression of zeaxanthin epoxidase mRNA in Arabidopsis in response to drought stress and during seed development. Aust. J. Plant Physiol. 28: 1161-1173 (2001).

Aufsatz W, Amry D, Grimm C. The ECS1 gene of Arabidopsis encodes a plant cell wall-associated protein and is potentially linked to a locus influencing resistance to Xanthomonas campestris. Plant Mol. Biol. 38: 965-976 (1998).

Aufsatz W, Mette MF, Matzke AJ, Matzke M. The role of MET1 in RNA-directed de novo and maintenance methylation of CG dinucleotides. Plant Mol. Biol. 54: 793-804 (2004).

Aukerman MJ, Sakai H. Regulation of flowering time and floral organ identity by a microRNA and its APETALA2-like target genes. Plant Cell 15: 2730-2741 (2003).

Auldridge ME, Block A, Vogel JT, Dabney-Smith C, Mila I, Bouzayen M, Magallanes-Lundback M, DellaPenna D, McCarty DR, Klee HJ. Characterization of three members of the Arabidopsis carotenoid cleavage dioxygenase family demonstrates the divergent roles of this multifunctional enzyme family. Plant J. 45: 982-993 (2006).

Aung K, Lin SI, Wu CC, Huang YT, Su CL, Chiou TJ. pho2, a phosphate overaccumulator, is caused by a nonsense mutation in a microRNA399 target gene. Plant Physiol. 141: 1000-1011 (2006).

Ausubel F ed. Summaries of National Science Foundation-sponsored Arabidopsis 2010 projects and National Science Foundation-sponsored plant genome projects that are generating Arabidopsis resources for the community. Plant Physiol. 129: 394-437 (2002).

Ausubel F, Benfey P. Arabidopsis functional genomics. Plant Physiol. 129: 393 (2002).

Ausubel FM. Arabidopsis genome. A milestone in plant biology. Plant Physiol. 124: 1451-1454 (2000).

Autran D, Huanca-Mamani W, Vielle-Calzada JP. Genomic imprinting in plants: the epigenetic version of an Oedipus complex. Curr. Opin. Plant Biol. 8: 19-25 (2005).

Avci U, Earl Petzold H, Ismail IO, Beers EP, Haigler CH. Cysteine proteases XCP1 and XCP2 aid micro-autolysis within the intact central vacuole during xylogenesis in Arabidopsis roots. Plant J. 56: 303-315 (2008).

Avdiushko S, Croft KP, Brown GC, Jackson DM, Hamilton-Kemp TR, Hildebrand D. Effect of volatile methyl jasmonate on the oxylipin pathway in tobacco, cucumber, and Arabidopsis. Plant Physiol. 109: 1227-1230 (1995).

Avenson TJ, Cruz JA, Kanazawa A, Kramer DM. Regulating the proton budget of higher plant photosynthesis. Proc. Natl. Acad. Sci. U.S.A. 102: 9709-9713 (2005).

Aviezer-Hagai K, Skovorodnikova J, Galigniana M, Farchi-Pisanty O, Maayan E, Bocovza S, Efrat Y, von Koskull-Doring P, Ohad N, Breiman A. Arabidopsis immunophilins ROF1 (AtFKBP62) and ROF2 (AtFKBP65) exhibit tissue specificity, are heat-stress induced, and bind HSP90. Plant Mol. Biol. 63: 237-255 (2007).

Avila C, Canton FR, Barnestein P, Suarez MF, Marraccini P, Rey M, Humara JM, Ordas R, Canovas FM. The promoter of a cytosolic glutamine synthetase gene from the conifer Pinus sylvestris is active in cotyledons of germinating seeds and light-regulated in transgenic Arabidopsis thaliana. Physiol. Plant. 112: 388-396 (2001).

Avila C, Perez-Rodriguez J, Canovas FM. Molecular characterization of a receptor-like protein kinase gene from pine (Pinus sylvestris L.). Planta 224: 12-19 (2006).

Avila EL, Brown M, Pan S, Desikan R, Neill SJ, Girke T, Surpin M, Raikhel NV. Expression analysis of Arabidopsis vacuolar sorting receptor 3 reveals a putative function in guard cells. J. Exp. Bot. 59: 1149-1161 (2008).

Avisar D, Abu-Abied M, Belausov E, Sadot E, Hawes C, Sparkes IA. A comparative study of the involvement of 17 Arabidopsis myosin family members on the motility of Golgi and other organelles. Plant Physiol. 150: 700-709 (2009).

Avonce N, Leyman B, Mascorro-Gallardo JO, Van Dijck P, Thevelein JM, Iturriaga G. The Arabidopsis trehalose-6-P synthase AtTPS1 gene is a regulator of glucose, abscisic acid, and stress signaling. Plant Physiol. 136: 3649-3659 (2004).

Avonce N, Leyman B, Thevelein J, Iturriaga G. Trehalose metabolism and glucose sensing in plants. Biochem. Soc. Trans. 33: 276-279 (2005).

Avsian-Kretchmer O, Cheng JC, Chen L, Moctezuma E, Sung ZR. Indole acetic acid distribution coincides with vascular differentiation pattern during Arabidopsis leaf ontogeny. Plant Physiol. 130: 199-209 (2002).

Awazuhara M, Fujiwara T, Hayashi H, Watanabe-Takahashi A, Takahashi H, Saito K. The function of SULTR2;1 sulfate transporter during seed development in Arabidopsis thaliana. Physiol. Plant. 125: 95-105 (2005).

Axelsen KB, Palmgren MG. Inventory of the superfamily of P-type ion pumps in Arabidopsis. Plant Physiol. 126: 696-706 (2001).

Axtell MJ, Bartel DP. Antiquity of microRNAs and their targets in land plants. Plant Cell 17: 1658-1673 (2005).

Ay N, Irmler K, Fischer A, Uhlemann R, Reuter G, Humbeck K. Epigenetic programming via histone methylation at WRKY53 controls leaf senescence in Arabidopsis thaliana. Plant J. 58: 333-346 (2009).

Ayliffe MA, Mitchell HJ, Deuschle K, Pryor AJ. Comparative analysis in cereals of a key proline catabolism gene. Mol. Genet. Genomics 274: 494-505 (2005).

Ayliffe MA, Pallotta M, Langridge P, Pryor AJ. A barley activation tagging system. Plant Mol. Biol. 64: 329-347 (2007).

Ayliffe MA, Roberts JK, Mitchell HJ, Zhang R, Lawrence GJ, Ellis JG, Pryor TJ. A plant gene up-regulated at rust infection sites. Plant Physiol. 129: 169-180 (2002).

Ayre BG, Blair JE, Turgeon R. Functional and phylogenetic analyses of a conserved regulatory program in the phloem of minor veins. Plant Physiol. 133: 1229-1239 (2003).

Ayre BG, Turgeon R. Graft transmission of a floral stimulant derived from CONSTANS. Plant Physiol. 135: 2271-2278 (2004).

Azevedo RA, Lea PJ. Lysine metabolism in higher plants. Amino Acids 20: 261-279 (2001).

Azhagiri AK, Maliga P. Exceptional paternal inheritance of plastids in Arabidopsis suggests that low-frequency leakage of plastids via pollen may be universal in plants. Plant J. 52: 817-823 (2007).

Azimzadeh J, Nacry P, Christodoulidou A, Drevensek S, Camilleri C, Amiour N, Parcy F, Pastuglia M, Bouchez D. Arabidopsis TONNEAU1 proteins are essential for preprophase band formation and interact with centrin. Plant Cell 20: 2146-2159 (2008).

Azpiroz R, Wu Y, LoCascio JC, Feldmann KA. An Arabidopsis brassinosteroid-dependent mutant is blocked in cell elongation. Plant Cell 10: 219-230 (1998).

Baba K, Schmidt J, Espinosa-Ruiz A, Villarejo A, Shiina T, Gardestrom P, Sane AP, Bhalerao RP. Organellar gene transcription and early seedling development are affected in the rpoT;2 mutant of Arabidopsis. Plant J. 38: 38-48 (2004).

Babiychuk E, Muller F, Eubel H, Braun HP, Frentzen M, Kushnir S. Arabidopsis phosphatidylglycerophosphate synthase 1 is essential for chloroplast differentiation, but is dispensable for mitochondrial function. Plant J. 33: 899-909 (2003).

Babourina O, Hawkins B, Lew RR, Newman I, Shabala S. K+ transport by Arabidopsis root hairs at low pH. Aust. J. Plant Physiol. 28: 635-641 (2001).

Babourina O, Rengel Z. Uptake of aluminium into Arabidopsis root cells measured by fluorescent lifetime imaging. Ann. Bot. (Lond.) 104: 189-195 (2009).

Babourina OK, Newman IA, Shabala SN. Electrophysiological localization of blue light sensory sites in etiolated dicotyledon seedlings. Plant Cell Environ. 26: 1505-1514 (2003).

Bachmann M, Huber JL, Athwal GS, Wu K, Ferl RJ, Huber SC. 14-3-3 proteins associate with the regulatory phosphorylation site of spinach leaf nitrate reductase in an isoform-specific manner and reduce dephosphorylation of Ser-543 by endogenous protein phosphatases. FEBS Lett. 398: 26-30 (1996).

Bachmann M, Huber JL, Liao PC, Gage DA, Huber SC. The inhibitor protein of phosphorylated nitrate reductase from spinach (Spinacia oleracea) leaves is a 14-3-3 protein. FEBS Lett. 387: 127-131 (1996).

Badawi GH, Kawano N, Yamauchi Y, Shimada E, Sasaki R, Kubo A, Tanaka K. Over-expression of ascorbate peroxidase in tobacco chloroplasts enhances the tolerance to salt stress and water deficit. Physiol. Plant. 121: 231-238 (2004).

Badawi M, Reddy YV, Agharbaoui Z, Tominaga Y, Danyluk J, Sarhan F, Houde M. Structure and functional analysis of wheat ICE (Inducer of CBF Expression) genes. Plant Cell Physiol. 49: 1237-1249 (2008).

Bade J, van Grinsven E, Custers J, Hoekstra S, Ponstein A. T-DNA tagging in Brassica napus as an efficient tool for the isolation of new promoters for selectable marker genes. Plant Mol. Biol. 52: 53-68 (2003).

Badejo AA, Eltelib HA, Fukunaga K, Fujikawa Y, Esaka M. Increase in ascorbate content of transgenic tobacco plants overexpressing the acerola (Malpighia glabra) phosphomannomutase gene. Plant Cell Physiol. 50: 423-428 (2009).

Badejo AA, Tanaka N, Esaka M. Analysis of GDP-D-mannose pyrophosphorylase gene promoter from acerola (Malpighia glabra) and increase in ascorbate content of transgenic tobacco expressing the acerola gene. Plant Cell Physiol. 49: 126-132 (2008).

Badri DV, Loyola-Vargas VM, Broeckling CD, De-la-Pena C, Jasinski M, Santelia D, Martinoia E, Sumner LW, Banta LM, Stermitz F, Vivanco JM. Altered profile of secondary metabolites in the root exudates of Arabidopsis ATP-binding cassette transporter mutants. Plant Physiol. 146: 762-771 (2008).

Bae H, Kim MS, Sicher RC, Bae HJ, Bailey BA. Necrosis- and ethylene-inducing peptide from Fusarium oxysporum induces a complex cascade of transcripts associated with signal transduction and cell death in Arabidopsis. Plant Physiol. 141: 1056-1067 (2006).

Bae HH, Herman E, Bailey B, Bae HJ, Sicher R. Exogenous trehalose alters Arabidopsis transcripts involved in cell wall modification, abiotic stress, nitrogen metabolism, and plant defense. Physiol. Plant. 125: 114-126 (2005).

Bae MS, Cho EJ, Choi EY, Park OK. Analysis of the Arabidopsis nuclear proteome and its response to cold stress. Plant J. 36: 652-663 (2003).

Baek D, Nam J, Koo YD, Kim DH, Lee J, Jeong JC, Kwak SS, Chung WS, Lim CO, Bahk JD, Hong JC, Lee SY, Kawai-Yamada M, Uchimiya H, Yun DJ. Bax-induced cell death of Arabidopsis is meditated through reactive oxygen-dependent and -independent processes. Plant Mol. Biol. 56: 15-27 (2004).

Baek JM, Han P, Iandolino A, Cook DR. Characterization and comparison of intron structure and alternative splicing between Medicago truncatula, Populus trichocarpa, Arabidopsis and rice. Plant Mol. Biol. 67: 499-510 (2008).

Baena-Gonzalez E, Rolland F, Thevelein JM, Sheen J. A central integrator of transcription networks in plant stress and energy signalling. Nature 448: 938-942 (2007).

Baerr JN, Thomas JD, Taylor BG, Rodermel SR, Gray GR. Differential photosynthetic compensatory mechanisms exist in the immutans mutant of Arabidopsis thaliana. Physiol. Plant. 124: 390-402 (2005).

Bagherieh-Najjar MB, de Vries OM, Hille J, Dijkwel PP. Arabidopsis RecQl4A suppresses homologous recombination and modulates DNA damage responses. Plant J. 43: 789-798 (2005).

Bagherieh-Najjar MB, de Vries OM, Kroon JT, Wright EL, Elborough KM, Hille J, Dijkwel PP. Arabidopsis RecQsim, a plant-specific member of the RecQ helicase family, can suppress the MMS hypersensitivity of the yeast sgs1 mutant. Plant Mol. Biol. 52: 273-284 (2003).

Baginsky S, Gruissem W. Arabidopsis thaliana proteomics: from proteome to genome. J. Exp. Bot. 57: 1485-1491 (2006).

Baginsky S, Gruissem W. Chloroplast proteomics: potentials and challenges. J. Exp. Bot. 55: 1213-1220 (2004).

Bagnall DJ, King RW. Phytochrome, photosynthesis and flowering of Arabidopsis thaliana: photophysiological studies using mutants and transgenic lines. Aust. J. Plant Physiol. 28: 401-408 (2001).

Bagnall DJ, King RW, Hangarter RP. Blue-light promotion of flowering is absent in hy4 mutants of Arabidopsis. Planta 200: 278-280 (1996).

Bagnall DJ, King RW, Whitelam GC, Boylan MT, Wagner D, Quail PH. Flowering responses to altered expression of phytochrome in mutants and transgenic lines of Arabidopsis thaliana (L.) Heynh. Plant Physiol. 108: 1495-1503 (1995).

Bai X, Peirson BN, Dong F, Xue C, Makaroff CA. Isolation and characterization of SYN1, a RAD21-like gene essential for meiosis in Arabidopsis. Plant Cell 11: 417-430 (1999).

Baier M, Dietz KJ. Protective function of chloroplast 2-cysteine peroxiredoxin in photosynthesis. Evidence from transgenic Arabidopsis. Plant Physiol. 119: 1407-1414 (1999).

Baier M, Hemmann G, Holman R, Corke F, Card R, Smith C, Rook F, Bevan MW. Characterization of mutants in Arabidopsis showing increased sugar-specific gene expression, growth, and developmental responses. Plant Physiol. 134: 81-91 (2004).

Baier M, Kandlbinder A, Golldack D, Dietz KJ. Oxidative stress and ozone: perception, signalling and response. Plant Cell Environ. 28: 1012-1020 (2005).

Baier M, Noctor G, Foyer CH, Dietz KJ. Antisense suppression of 2-cysteine peroxiredoxin in Arabidopsis specifically enhances the activities and expression of enzymes associated with ascorbate metabolism but not glutathione metabolism. Plant Physiol. 124: 823-832 (2000).

Bailey PC, Dicks J, Wang TL, Martin C. IT3F: a web-based tool for functional analysis of transcription factors in plants. Phytochemistry 69: 2417-2425 (2008).

Bailey S, Horton P, Walters RG. Acclimation of Arabidopsis thaliana to the light environment: the relationship between photosynthetic function and chloroplast composition. Planta 218: 793-802 (2004).

Bailey S, Walters RG, Jansson S, Horton P. Acclimation of Arabidopsis thaliana to the light environment: the existence of separate low light and high light responses. Planta 213: 794-801 (2001).

Bainbridge K, Sorefan K, Ward S, Leyser O. Hormonally controlled expression of the Arabidopsis MAX4 shoot branching regulatory gene. Plant J. 44: 569-580 (2005).

Bais HP, Fall R, Vivanco JM. Biocontrol of Bacillus subtilis against infection of Arabidopsis roots by Pseudomonas syringae is facilitated by biofilm formation and surfactin production. Plant Physiol. 134: 307-319 (2004).

Bais HP, Vepachedu R, Gilroy S, Callaway RM, Vivanco JM. Allelopathy and exotic plant invasion: from molecules and genes to species interactions. Science 301: 1377-1380 (2003).

Bajaj S, Targolli J, Liu LF, Ho THD, Wu R. Transgenic approaches to increase dehydration-stress tolerance in plants. Mol. Breed. 5: 493-503 (1999).

Bajic VB, Veronika M, Veladandi PS, Meka A, Heng MW, Rajaraman K, Pan H, Swarup S. Dragon Plant Biology Explorer. A text-mining tool for integrating associations between genetic and biochemical entities with genome annotation and biochemical terms lists. Plant Physiol. 138: 1914-1925 (2005).

Bak S, Feyereisen R. The involvement of two P450 enzymes, CYP83B1 and CYP83A1, in auxin homeostasis and glucosinolate biosynthesis. Plant Physiol. 127: 108-118 (2001).

Bak S, Nielsen HL, Halkier BA. The presence of CYP79 homologues in glucosinolate-producing plants shows evolutionary conservation of the enzymes in the conversion of amino acid to aldoxime in the biosynthesis of cyanogenic glucosides and glucosinolates. Plant Mol. Biol. 38: 725-734 (1998).

Bak S, Olsen CE, Halkier BA, Moller BL. Transgenic tobacco and Arabidopsis plants expressing the two multifunctional sorghum cytochrome P450 enzymes, CYP79A1 and CYP71E1, are cyanogenic and accumulate metabolites derived from intermediates in dhurrin biosynthesis. Plant Physiol. 123: 1437-1448 (2000).

Bak S, Olsen CE, Petersen BL, Moller BL, Halkier BA. Metabolic engineering of p-hydroxybenzylglucosinolate in Arabidopsis by expression of the cyanogenic CYP79A1 from Sorghum bicolor. Plant J. 20: 663-671 (1999).

Bak S, Tax FE, Feldmann KA, Galbraith DW, Feyereisen R. CYP83B1, a cytochrome P450 at the metabolic branch point in auxin and indole glucosinolate biosynthesis in Arabidopsis. Plant Cell 13: 101-111 (2001).

Baker A, Sparkes IA. Peroxisome protein import: some answers, more questions. Curr. Opin. Plant Biol. 8: 640-647 (2005).

Bakker EG, Toomajian C, Kreitman M, Bergelson J. A genome-wide survey of R gene polymorphisms in Arabidopsis. Plant Cell 18: 1803-1818 (2006).

Balague C, Lin B, Alcon C, Flottes G, Malmstrom S, Kohler C, Neuhaus G, Pelletier G, Gaymard F, Roby D. HLM1, an essential signaling component in the hypersensitive response, is a member of the cyclic nucleotide-gated channel ion channel family. Plant Cell 15: 365-379 (2003).

Balakumar T, Selvakumar V, Sathiameena K, Ilanchezhian CM, Paliwal K. UV-B radiation mediated alterations in the nitrate assimilation pathway of crop plants. 1. Kinetic characteristics of nitrate reductase. Photosynthetica 37: 459-467 (1999).

Balandin T, Castresana C. AtCOX17, an Arabidopsis homolog of the yeast copper chaperone COX17. Plant Physiol. 129: 1852-1857 (2002).

Balanza V, Navarrete M, Trigueros M, Ferrandiz C. Patterning the female side of Arabidopsis: the importance of hormones. J. Exp. Bot. 57: 3457-3469 (2006).

Baldwin A, Wardle A, Patel R, Dudley P, Park SK, Twell D, Inoue K, Jarvis P. A molecular-genetic study of the Arabidopsis TOC75 gene family. Plant Physiol. 138: 715-733 (2005).

Balk J, Chew SK, Leaver CJ, McCabe PF. The intermembrane space of plant mitochondria contains a DNase activity that may be involved in programmed cell death. Plant J. 34: 573-583 (2003).

Ball L, Accotto GP, Bechtold U, Creissen G, Funck D, Jimenez A, Kular B, Leyland N, Mejia-Carranza J, Reynolds H, Karpinski S, Mullineaux PM. Evidence for a direct link between glutathione biosynthesis and stress defense gene expression in Arabidopsis. Plant Cell 16: 2448-2462 (2004).

Ballere CL. Circadian maestro leads plant gene expression symphony. Trends Plant Sci. 6: 96-97 (2001).

Ballottari M, Dall'Osto L, Morosinotto T, Bassi R. Contrasting behavior of higher plant photosystem I and II antenna systems during acclimation. J. Biol. Chem. 282: 8947-8958 (2007).

Ballottari M, Govoni C, Caffarri S, Morosinotto T. Stoichiometry of LHCI antenna polypeptides and characterization of gap and linker pigments in higher plants photosystem I. Eur. J. Biochem. 271: 4659-4665 (2004).

Bancos S, Nomura T, Sato T, Molnar G, Bishop GJ, Koncz C, Yokota T, Nagy F, Szekeres M. Regulation of transcript levels of the Arabidopsis cytochrome P450 genes involved in brassinosteroid biosynthesis. Plant Physiol. 130: 504-513 (2002).

Bancos S, Szatmari AM, Castle J, Kozma-Bognar L, Shibata K, Yokota T, Bishop GJ, Nagy F, Szekeres M. Diurnal regulation of the brassinosteroid-biosynthetic CPD gene in Arabidopsis. Plant Physiol. 141: 299-309 (2006).

Bang WY, Jeong IS, Kim DW, Im CH, Ji C, Hwang SM, Kim SW, Son YS, Jeong J, Shiina T, Bahk JD. Role of Arabidopsis CHL27 protein for photosynthesis, chloroplast development, and gene expression profiling. Plant Cell Physiol. 49: 1350-1363 (2008).

Bang WY, Kim SW, Ueda A, Vikram M, Yun DJ, Bressan RA, Hasegawa PM, Bahk JD, Koiwa H. Arabidopsis carboxyl-terminal domain phosphatase-like isoforms share common catalytic and interaction domains but have distinct in planta functions. Plant Physiol. 142: 586-594 (2006).

Banilas G, Nikiforiadis A, Makariti I, Moressis A, Hatzopoulos P. Discrete roles of a microsomal linoleate desaturase gene in olive identified by spatiotemporal transcriptional analysis. Tree Physiol. 27: 481-490 (2007).

Banti V, Loreti E, Novi G, Santaniello A, Alpi A, Perata P. Heat acclimation and cross-tolerance against anoxia in Arabidopsis. Plant Cell Environ. 31: 1029-1037 (2008).

Bao F, Shen J, Brady SR, Muday GK, Asami T, Yang Z. Brassinosteroids interact with auxin to promote lateral root development in Arabidopsis. Plant Physiol. 134: 1624-1631 (2004).

Bao X, Focke M, Pollard M, Ohlrogge J. Understanding in vivo carbon precursor supply for fatty acid synthesis in leaf tissue. Plant J. 22: 39-50 (2000).

Bao X, Franks RG, Levin JZ, Liu Z. Repression of AGAMOUS by BELLRINGER in floral and inflorescence meristems. Plant Cell 16: 1478-1489 (2004).

Bao X, Shorrosh BS, Ohlrogge JB. Isolation and characterization of an Arabidopsis biotin carboxylase gene and its promoter. Plant Mol. Biol. 35: 539-550 (1997).

Bar M, Aharon M, Benjamin S, Rotblat B, Horowitz M, Avni A. AtEHDs, novel Arabidopsis EH-domain containing proteins involved in endocytosis. Plant J. 55: 1025-1038 (2008).

Bar-Nun N, Sachs T, Mayer AM. A role for IAA in the infection of Arabidopsis thaliana by Orobanche aegyptiaca. Ann. Bot. (Lond.) 101: 261-265 (2008).

Bar-Peled M, Conceicao A, Frigerio L, Raikhel NV. Expression and regulation of aERD2, a gene encoding the KDEL receptor homolog in plants, and other genes encoding proteins involved in ER-golgi vesicular trafficking. Plant Cell 7: 667-676 (1995).

Bar-Peled M, Raikhel NV. Characterization of AtSEC12 and AtSAR1. Proteins likely involved in endoplasmic reticulum and Golgi transport. Plant Physiol. 114: 315-324 (1997).

Barabas NK, Omarov RT, Erdei L, Lips SH. Distribution of the Mo-enzymes aldehyde oxidase, xanthine dehydrogenase and nitrate reductase in maize (Zea mays L.) nodal roots as affected by nitrogen and salinity. Plant Sci. 155: 49-58 (2000).

Barakat A, Szick-Miranda K, Chang IF, Guyot R, Blanc G, Cooke R, Delseny M, Bailey-Serres J. The organization of cytoplasmic ribosomal protein genes in the Arabidopsis genome. Plant Physiol. 127: 398-415 (2001).

Barakat A, Wall K, Leebens-Mack J, Wang YJ, Carlson JE, Depamphilis CW. Large-scale identification of microRNAs from a basal eudicot (Eschscholzia californica) and conservation in flowering plants. Plant J. 51: 991-1003 (2007).

Barazesh S, McSteen P. Hormonal control of grass inflorescence development. Trends Plant Sci. 13: 656-662 (2008).

Barbagallo RP, Oxborough K, Pallett KE, Baker NR. Rapid, noninvasive screening for perturbations of metabolism and plant growth using chlorophyll fluorescence imaging. Plant Physiol. 132: 485-493 (2003).

Barbier GG, Campbell WH. Viscosity effects on eukaryotic nitrate reductase activity. J. Biol. Chem. 280: 26049-26054 (2005).

Barbier-Brygoo H, Vinauger M, Colcombet J, Ephritikhine G, Frachisse J, Maurel C. Anion channels in higher plants: functional characterization, molecular structure and physiological role. Biochim. Biophys. Acta 1465: 199-218 (2000).

Barbour MM, Farquhar GD. Do pathways of water movement and leaf anatomical dimensions allow development of gradients in (H2O)-O-18 between veins and the sites of evaporation within leaves?. Plant Cell Environ. 27: 107-121 (2004).

Barcala M, García A, Cubas P, Almoguera C, Jordano J, Fenoll C, Escobar C. Distinct heat-shock element arrangements that mediate the heat shock, but not the late-embryogenesis induction of small heat-shock proteins, correlate with promoter activation in root-knot nematode feeding cells. Plant Mol. Biol. 66: 151-164 (2008).

Barczak AJ, Zhao J, Pruitt KD, Last RL. 5-Fluoroindole resistance identifies tryptophan synthase beta subunit mutants in Arabidopsis thaliana. Genetics 140: 303-313 (1995).

Barg R, Sobolev I, Eilon T, Gur A, Chmelnitsky I, Shabtai S, Grotewold E, Salts Y. The tomato early fruit specific gene Lefsm1 defines a novel class of plant-specific SANT/MYB domain proteins. Planta 221: 197-211 (2005).

Bargmann BO, Laxalt AM, Riet BT, van Schooten B, Merquiol E, Testerink C, Haring MA, Bartels D, Munnik T. Multiple PLDS required for high salinity and water-deficit tolerance in plants. Plant Cell Physiol. 50: 78-89 (2009).

Bargmann BO, Laxalt AM, ter Riet B, Testerink C, Merquiol E, Mosblech A, Leon-Reyes A, Pieterse CM, Haring MA, Heilmann I, Bartels D, Munnik T. Reassessing the role of phospholipase D in the Arabidopsis wounding response. Plant Cell Environ. 32: 837-850 (2009).

Bari R, Datt Pant B, Stitt M, Scheible WR. PHO2, microRNA399, and PHR1 define a phosphate-signaling pathway in plants. Plant Physiol. 141: 988-999 (2006).

Bari R, Kebeish R, Kalamajka R, Rademacher T, Peterhansel C. A glycolate dehydrogenase in the mitochondria of Arabidopsis thaliana. J. Exp. Bot. 55: 623-630 (2004).

Bariola PA, MacIntosh GC, Green PJ. Regulation of S-like ribonuclease levels in Arabidopsis. Antisense inhibition of RNS1 or RNS2 elevates anthocyanin accumulation. Plant Physiol. 119: 331-342 (1999).

Barjaktarovic Z, Nordheim A, Lamkemeyer T, Fladerer C, Madlung J, Hampp R. Time-course of changes in amounts of specific proteins upon exposure to hyper-g, 2-D clinorotation, and 3-D random positioning of Arabidopsis cell cultures. J. Exp. Bot. 58: 4357-4363 (2007).

Barjaktarovic Z, Schutz W, Madlung J, Fladerer C, Nordheim A, Hampp R. Changes in the effective gravitational field strength affect the state of phosphorylation of stress-related proteins in callus cultures of Arabidopsis thaliana. J. Exp. Bot. 60: 779-789 (2009).

Barkan L, Vijayan P, Carlsson AS, Mekhedov S, Browse J. A suppressor of fab1 challenges hypotheses on the role of thylakoid unsaturation in photosynthetic function. Plant Physiol. 141: 1012-1020 (2006).

Barker GC, Larson TR, Graham IA, Lynn JR, King GJ. Novel insights into seed fatty acid synthesis and modification pathways from genetic diversity and quantitative trait Loci analysis of the brassica C genome. Plant Physiol. 144: 1827-1842 (2007).

Barker JH, Slocombe SP, Ball KL, Hardie DG, Shewry PR, Halford NG. Evidence that barley 3-hydroxy-3-methylglutaryl-coenzyme A reductase kinase is a member of the sucrose nonfermenting-1-related protein kinase family. Plant Physiol. 112: 1141-1149 (1996).

Barker L, Kuhn C, Weise A, Schulz A, Gebhardt C, Hirner B, Hellmann H, Schulze W, Ward JM, Frommer WB. SUT2, a putative sucrose sensor in sieve elements. Plant Cell 12: 1153-1164 (2000).

Barkla BJ, Vera-Estrella R, Pantoja O. Towards the production of salt-tolerant crops. Adv. Exp. Med. Biol. 464: 77-89 (1999).

Barley K. Why hypocotyl extension mutants need to be characterized at the cell level: a case study of axr3-1. J. Exp. Bot. 55: 1071-1078 (2004).

Barnes S. Comparing Arabidopsis to other flowering plants. Curr. Opin. Plant Biol. 5: 128-134 (2002).

Barone P, Rosellini D, Lafayette P, Bouton J, Veronesi F, Parrott W. Bacterial citrate synthase expression and soil aluminum tolerance in transgenic alfalfa. Plant Cell Rep. 27: 893-901 (2008).

Baroux C, Fransz P, Grossniklaus U. Nuclear fusions contribute to polyploidization of the gigantic nuclei in the chalazal endosperm of Arabidopsis. Planta 220: 38-46 (2004).

Baroux C, Pecinka A, Fuchs J, Schubert I, Grossniklaus U. The triploid endosperm genome of Arabidopsis adopts a peculiar, parental-dosage-dependent chromatin organization. Plant Cell 19: 1782-1794 (2007).

Barow M, Meister A. Endopolyploidy in seed plants is differently correlated to systematics, organ, life strategy and genome size. Plant Cell Environ. 26: 571-584 (2003).

Barr J, White WS, Chen L, Bae H, Rodermel S. The GHOST terminal oxidase regulates developmental programming in tomato fruit. Plant Cell Environ. 27: 840-852 (2004).

Barrell PJ, Grossniklaus U. Confocal microscopy of whole ovules for analysis of reproductive development: the elongate1 mutant affects meiosis II. Plant J. 43: 309-320 (2005).

Barrero JM, Piqueras P, Gonzalez-Guzman M, Serrano R, Rodriguez PL, Ponce MR, Micol JL. A mutational analysis of the ABA1 gene of Arabidopsis thaliana highlights the involvement of ABA in vegetative development. J. Exp. Bot. 56: 2071-2083 (2005).

Barrero JM, Rodriguez PL, Quesada V, Piqueras P, Ponce MR, Micol JL. Both abscisic acid (ABA)-dependent and ABA-independent pathways govern the induction of NCED3, AAO3 and ABA1 in response to salt stress. Plant Cell Environ. 29: 2000-2008 (2006).

Barrero RA, Umeda M, Yamamura S, Uchimiya H. Arabidopsis CAP regulates the actin cytoskeleton necessary for plant cell elongation and division. Plant Cell 14: 149-163 (2002).

Barrero RA, Umeda M, Yamamura S, Uchimiya H. Over-expression of Arabidopsis CAP causes decreased cell expansion leading to organ size reduction in transgenic tobacco plants. Ann. Bot. (Lond.) 91: 599-603 (2003).

Barroco RM, Van Poucke K, Bergervoet JH, De Veylder L, Groot SP, Inze D, Engler G. The role of the cell cycle machinery in resumption of postembryonic development. Plant Physiol. 137: 127-140 (2005).

Barroso C, Romero LC, Cejudo FJ, Vega JM, Gotor C. Salt-specific regulation of the cytosolic O-acetylserine(thiol)lyase gene from Arabidopsis thaliana is dependent on abscisic acid. Plant Mol. Biol. 40: 729-736 (1999).

Barroso C, Vega JM, Gotor C. A new member of the cytosolic O-acetylserine(thiol)lyase gene family in Arabidopsis thaliana. FEBS Lett. 363: 1-5 (1995).

Bartel B, Fink GR. Differential regulation of an auxin-producing nitrilase gene family in Arabidopsis thaliana. Proc. Natl. Acad. Sci. U.S.A. 91: 6649-6653 (1994).

Bartel B, Fink GR. ILR1, an amidohydrolase that releases active indole-3-acetic acid from conjugates. Science 268: 1745-1748 (1995).

Bartel B, Last RL. Weed power, translating Arabidopsis. Plant Physiol. 135: 601 (2004).

Barth C, Conklin PL. The lower cell density of leaf parenchyma in the Arabidopsis thaliana mutant lcd1-1 is associated with increased sensitivity to ozone and virulent Pseudomonas syringae. Plant J. 35: 206-218 (2003).

Barth C, De Tullio M, Conklin PL. The role of ascorbic acid in the control of flowering time and the onset of senescence. J. Exp. Bot. 57: 1657-1665 (2006).

Barth C, Jander G. Arabidopsis myrosinases TGG1 and TGG2 have redundant function in glucosinolate breakdown and insect defense. Plant J. 46: 549-562 (2006).

Barth C, Moeder W, Klessig DF, Conklin PL. The timing of senescence and response to pathogens is altered in the ascorbate-deficient Arabidopsis mutant vitamin c-1. Plant Physiol. 134: 1784-1792 (2004).

Barth I, Meyer S, Sauer N. PmSUC3: characterization of a SUT2/SUC3-type sucrose transporter from Plantago major. Plant Cell 15: 1375-1385 (2003).

Barth O, Vogt S, Uhlemann R, Zschiesche W, Humbeck K. Stress induced and nuclear localized HIPP26 from Arabidopsis thaliana interacts via its heavy metal associated domain with the drought stress related zinc finger transcription factor ATHB29. Plant Mol. Biol. 69: 213-226 (2009).

Barthels N, van der Lee FM, Klap J, Goddijn OJ, Karimi M, Puzio P, Grundler FM, Ohl SA, Lindsey K, Robertson L, Robertson WM, Van Montagu M, Gheysen G, Sijmons PC. Regulatory sequences of Arabidopsis drive reporter gene expression in nematode feeding structures. Plant Cell 9: 2119-2134 (1997).

Bartlem D, Lambein I, Okamoto T, Itaya A, Uda Y, Kijima F, Tamaki Y, Nambara E, Naito S. Mutation in the threonine synthase gene results in an over-accumulation of soluble methionine in Arabidopsis. Plant Physiol. 123: 101-110 (2000).

Bartling D, Seedorf M, Mithofer A, Weiler EW. Cloning and expression of an Arabidopsis nitrilase which can convert indole-3-acetonitrile to the plant hormone, indole-3-acetic acid. Eur. J. Biochem. 205: 417-424 (1992).

Bartling D, Seedorf M, Schmidt RC, Weiler EW. Molecular characterization of two cloned nitrilases from Arabidopsis thaliana: key enzymes in biosynthesis of the plant hormone indole-3-acetic acid. Proc. Natl. Acad. Sci. U.S.A. 91: 6021-6025 (1994).

Bartling D, Weiler EW. Leucine aminopeptidase from Arabidopsis thaliana. Molecular evidence for a phylogenetically conserved enzyme of protein turnover in higher plants. Eur. J. Biochem. 205: 425-431 (1992).

Bartoli CG, Yu J, Gomez F, Fernandez L, McIntosh L, Foyer CH. Inter-relationships between light and respiration in the control of ascorbic acid synthesis and accumulation in Arabidopsis thaliana leaves. J. Exp. Bot. 57: 1621-1631 (2006).

Barton CJ, Tailford LE, Welchman H, Zhang Z, Gilbert HJ, Dupree P, Goubet F. Enzymatic fingerprinting of Arabidopsis pectic polysaccharides using polysaccharide analysis by carbohydrate gel electrophoresis (PACE). Planta 224: 163-174 (2006).

Bartsch M, Gobbato E, Bednarek P, Debey S, Schultze JL, Bautor J, Parker JE. Salicylic acid-independent ENHANCED DISEASE SUSCEPTIBILITY1 signaling in Arabidopsis immunity and cell death is regulated by the monooxygenase FMO1 and the Nudix hydrolase NUDT7. Plant Cell 18: 1038-1051 (2006).

Baskin TI, Beemster GT, Judy-March JE, Marga F. Disorganization of cortical microtubules stimulates tangential expansion and reduces the uniformity of cellulose microfibril alignment among cells in the root of Arabidopsis. Plant Physiol. 135: 2279-2290 (2004).

Baskin TI, Bivens NJ. Stimulation of radial expansion in Arabidopsis roots by inhibitors of actomyosin and vesicle secretion but not by various inhibitors of metabolism. Planta 197: 514-521 (1995).

Baskin TI, Remillong EL, Wilson JE. The impact of mannose and other carbon sources on the elongation and diameter of the primary root of Arabidopsis thaliana. Aust. J. Plant Physiol. 28: 481-488 (2001).

Baskin TI, Wilson JE. Inhibitors of protein kinases and phosphatases alter root morphology and disorganize cortical microtubules. Plant Physiol. 113: 493-502 (1997).

Basse CW, Kerschbamer C, Brustmann M, Altmann T, Kahmann R. Evidence for a Ustilago maydis steroid 5alpha-reductase by functional expression in Arabidopsis det2-1 mutants. Plant Physiol. 129: 717-732 (2002).

Bassel GW, Mullen RT, Bewley JD. ABI3 expression ceases following, but not during, germination of tomato and Arabidopsis seeds. J. Exp. Bot. 57: 1291-1297 (2006).

Bassel GW, Zielinska E, Mullen RT, Bewley JD. Down-regulation of della genes is not essential for germination of tomato, soybean, and Arabidopsis seeds. Plant Physiol. 136: 2782-2789 (2004).

Basset G, Raymond P, Malek L, Brouquisse R. Changes in the expression and the enzymic properties of the 20S proteasome in sugar-starved maize roots. Evidence for an in vivo oxidation of the proteasome. Plant Physiol. 128: 1149-1162 (2002).

Basset GJ, Quinlivan EP, Ravanel S, Rebeille F, Nichols BP, Shinozaki K, Seki M, Adams-Phillips LC, Giovannoni JJ, Gregory JF 3rd, Hanson AD. Folate synthesis in plants: the p-aminobenzoate branch is initiated by a bifunctional PabA-PabB protein that is targeted to plastids. Proc. Natl. Acad. Sci. U.S.A. 101: 1496-1501 (2004).

Basset GJ, Ravanel S, Quinlivan EP, White R, Giovannoni JJ, Rebeille F, Nichols BP, Shinozaki K, Seki M, Gregory JF 3rd, Hanson AD. Folate synthesis in plants: the last step of the p-aminobenzoate branch is catalyzed by a plastidial aminodeoxychorismate lyase. Plant J. 40: 453-461 (2004).

Basset M, Conejero G, Lepetit M, Fourcroy P, Sentenac H. Organization and expression of the gene coding for the potassium transport system AKT1 of Arabidopsis thaliana. Plant Mol. Biol. 29: 947-958 (1995).

Bassham DC, Raikhel NV. An Arabidopsis VPS45p homolog implicated in protein transport to the vacuole. Plant Physiol. 117: 407-415 (1998).

Basu C, Halfhill MD, Mueller TC, Stewart CN Jr. Weed genomics: new tools to understand weed biology. Trends Plant Sci. 9: 391-398 (2004).

Basu D, Dehesh K, Schneider-Poetsch HJ, Harrington SE, McCouch SR, Quail PH. Rice PHYC gene: structure, expression, map position and evolution. Plant Mol. Biol. 44: 27-42 (2000).

Basu D, Le J, El-Essal Sel-D, Huang S, Zhang C, Mallery EL, Koliantz G, Staiger CJ, Szymanski DB. DISTORTED3/SCAR2 is a putative Arabidopsis wave complex subunit that activates the Arp2/3 complex and is required for epidermal morphogenesis. Plant Cell 17: 502-524 (2005).

Bate NJ, Rothstein SJ. C6-volatiles derived from the lipoxygenase pathway induce a subset of defense-related genes. Plant J. 16: 561-569 (1998).

Bate NJ, Sivasankar S, Moxon C, Riley JM, Thompson JE, Rothstein SJ. Molecular characterization of an Arabidopsis gene encoding hydroperoxide lyase, a cytochrome P-450 that is wound inducible. Plant Physiol. 117: 1393-1400 (1998).

Batistic O, Sorek N, Schultke S, Yalovsky S, Kudla J. Dual fatty acyl modification determines the localization and plasma membrane targeting of CBL/CIPK Ca2+ signaling complexes in Arabidopsis. Plant Cell 20: 1346-1362 (2008).

Battke F, Ernst D, Halbach S. Ascorbate promotes emission of mercury vapour from plants. Plant Cell Environ. 28: 1487-1495 (2005).

Baubec T, Scheid OM. Medea in full self-control. Trends Plant Sci. 11: 469-471 (2006).

Bauby H, Divol F, Truernit E, Grandjean O, Palauqui JC. Protophloem differentiation in early Arabidopsis thaliana development. Plant Cell Physiol. 48: 97-109 (2007).

Baucher M, El Jaziri M, Vandeputte O. From primary to secondary growth: origin and development of the vascular system. J. Exp. Bot. 58: 3485-3501 (2007).

Baud S, Graham IA. A spatiotemporal analysis of enzymatic activities associated with carbon metabolism in wild-type and mutant embryos of Arabidopsis using in situ histochemistry. Plant J. 46: 155-169 (2006).

Baud S, Guyon V, Kronenberger J, Wuilleme S, Miquel M, Caboche M, Lepiniec L, Rochat C. Multifunctional acetyl-CoA carboxylase 1 is essential for very long chain fatty acid elongation and embryo development in Arabidopsis. Plant J. 33: 75-86 (2003).

Baud S, Mendoza MS, To A, Harscoet E, Lepiniec L, Dubreucq B. WRINKLED1 specifies the regulatory action of LEAFY COTYLEDON2 towards fatty acid metabolism during seed maturation in Arabidopsis. Plant J. 50: 825-838 (2007).

Baud S, Vaultier MN, Rochat C. Structure and expression profile of the sucrose synthase multigene family in Arabidopsis. J. Exp. Bot. 55: 397-409 (2004).

Baud S, Wuilleme S, Dubreucq B, de Almeida A, Vuagnat C, Lepiniec L, Miquel M, Rochat C. Function of plastidial pyruvate kinases in seeds of Arabidopsis thaliana. Plant J. 52: 405-419 (2007).

Baud S, Wuilleme S, Lemoine R, Kronenberger J, Caboche M, Lepiniec L, Rochat C. The AtSUC5 sucrose transporter specifically expressed in the endosperm is involved in early seed development in Arabidopsis. Plant J. 43: 824-836 (2005).

Baudouin E, Charpenteau M, Ranjeva R, Ranty B. A 45-kDa protein kinase related to mitogen-activated protein kinase is activated in tobacco cells treated with a phorbol ester. Planta 214: 400-405 (2002).

Baudry A, Caboche M, Lepiniec L. TT8 controls its own expression in a feedback regulation involving TTG1 and homologous MYB and bHLH factors, allowing a strong and cell-specific accumulation of flavonoids in Arabidopsis thaliana. Plant J. 46: 768-779 (2006).

Baudry A, Heim MA, Dubreucq B, Caboche M, Weisshaar B, Lepiniec L. TT2, TT8, and TTG1 synergistically specify the expression of BANYULS and proanthocyanidin biosynthesis in Arabidopsis thaliana. Plant J. 39: 366-380 (2004).

Bauer D, Viczian A, Kircher S, Nobis T, Nitschke R, Kunkel T, Panigrahi KC, Adam E, Fejes E, Schafer E, Nagy F. Constitutive photomorphogenesis 1 and multiple photoreceptors control degradation of phytochrome interacting factor 3, a transcription factor required for light signaling in Arabidopsis. Plant Cell 16: 1433-1445 (2004).

Bauer M, Dietrich C, Nowak K, Sierralta WD, Papenbrock J. Intracellular localization of Arabidopsis sulfurtransferases. Plant Physiol. 135: 916-926 (2004).

Bauer P, Thiel T, Klatte M, Bereczky Z, Brumbarova T, Hell R, Grosse I. Analysis of sequence, map position, and gene expression reveals conserved essential genes for iron uptake in Arabidopsis and tomato. Plant Physiol. 136: 4169-4183 (2004).

Baumberger N, Doesseger B, Guyot R, Diet A, Parsons RL, Clark MA, Simmons MP, Bedinger P, Goff SA, Ringli C, Keller B. Whole-genome comparison of leucine-rich repeat extensins in Arabidopsis and rice. A conserved family of cell wall proteins form a vegetative and a reproductive clade. Plant Physiol. 131: 1313-1326 (2003).

Baumberger N, Steiner M, Ryser U, Keller B, Ringli C. Synergistic interaction of the two paralogous Arabidopsis genes LRX1 and LRX2 in cell wall formation during root hair development. Plant J. 35: 71-81 (2003).

Baumbusch LO, Hughes DW, Galau GA, Jakobsen KS. LEC1, FUS3, ABI3 and Em expression reveals no correlation with dormancy in Arabidopsis. J. Exp. Bot. 55: 77-87 (2004).

Baumgardt RL, Oliverio KA, Casal JJ, Hoecker U. SPA1, a component of phytochrome A signal transduction, regulates the light signaling current. Planta 215: 745-753 (2002).

Baunsgaard L, Lutken H, Mikkelsen R, Glaring MA, Pham TT, Blennow A. A novel isoform of glucan, water dikinase phosphorylates pre-phosphorylated alpha-glucans and is involved in starch degradation in Arabidopsis. Plant J. 41: 595-605 (2005).

Baurle I, Laux T. Regulation of WUSCHEL transcription in the stem cell niche of the Arabidopsis shoot meristem. Plant Cell 17: 2271-2280 (2005).

Bauwe H, Kolukisaoglu U. Genetic manipulation of glycine decarboxylation. J. Exp. Bot. 54: 1523-1535 (2003).

Baxter CE, Costa MM, Coen ES. Diversification and co-option of RAD-like genes in the evolution of floral asymmetry. Plant J. 52: 105-113 (2007).

Baxter CJ, Liu JL, Fernie AR, Sweetlove LJ. Determination of metabolic fluxes in a non-steady-state system. Phytochemistry 68: 2313-2319 (2007).

Baxter CJ, Redestig H, Schauer N, Repsilber D, Patil KR, Nielsen J, Selbig J, Liu J, Fernie AR, Sweetlove LJ. The metabolic response of heterotrophic Arabidopsis cells to oxidative stress. Plant Physiol. 143: 312-325 (2007).

Baxter I, Tchieu J, Sussman MR, Boutry M, Palmgren MG, Gribskov M, Harper JF, Axelsen KB. Genomic comparison of P-type ATPase ion pumps in Arabidopsis and rice. Plant Physiol. 132: 618-628 (2003).

Baxter IR, Vitek O, Lahner B, Muthukumar B, Borghi M, Morrissey J, Guerinot ML, Salt DE. The leaf ionome as a multivariable system to detect a plant's physiological status. Proc. Natl. Acad. Sci. U.S.A. 105: 12081-12086 (2008).

Baxter J, Moeder W, Urquhart W, Shahinas D, Chin K, Christendat D, Kang HG, Angelova M, Kato N, Yoshioka K. Identification of a functionally essential amino acid for Arabidopsis cyclic nucleotide gated ion channels using the chimeric AtCNGC11/12 gene. Plant J. 56: 457-469 (2008).

Baxter-Burrell A, Chang R, Springer P, Bailey-Serres J. Gene and enhancer trap transposable elements reveal oxygen deprivation-regulated genes and their complex patterns of expression in Arabidopsis. Ann. Bot. (Lond.) 91: 129-141 (2003).

Beale SI. Green genes gleaned. Trends Plant Sci. 10: 309-312 (2005).

Beattie GA, Marcell LM. Effect of alterations in cuticular wax biosynthesis on the physicochemical properties and topography of maize leaf surfaces. Plant Cell Environ. 25: 1-16 (2002).

Beaudoin N, Serizet C, Gosti F, Giraudat J. Interactions between abscisic acid and ethylene signaling cascades. Plant Cell 12: 1103-1116 (2000).

Becher M, Talke IN, Krall L, Kramer U. Cross-species microarray transcript profiling reveals high constitutive expression of metal homeostasis genes in shoots of the zinc hyperaccumulator Arabidopsis halleri. Plant J. 37: 251-268 (2004).

Bechtold U, Karpinski S, Mullineaux PM. The influence of the light environment and photosynthesis on oxidative signalling responses in plant-biotrophic pathogen interactions. Plant Cell Environ. 28: 1046-1055 (2005).

Bechtold U, Murphy DJ, Mullineaux PM. Arabidopsis peptide methionine sulfoxide reductase2 prevents cellular oxidative damage in long nights. Plant Cell 16: 908-919 (2004).

Bechtold U, Rabbani N, Mullineaux PM, Thornalley PJ. Quantitative measurement of specific biomarkers for protein oxidation, nitration and glycation in Arabidopsis leaves. Plant J. 59: 661-671 (2009).

Bechtold U, Richard O, Zamboni A, Gapper C, Geisler M, Pogson B, Karpinski S, Mullineaux PM. Impact of chloroplastic- and extracellular-sourced ROS on high light-responsive gene expression in Arabidopsis. J. Exp. Bot. 59: 121-133 (2008).

Beck A, Lendzian K, Oven M, Christmann A, Grill E. Phytochelatin synthase catalyzes key step in turnover of glutathione conjugates. Phytochemistry 62: 423-431 (2003).

Becker B, Holtgrefe S, Jung S, Wunrau C, Kandlbinder A, Baier M, Dietz KJ, Backhausen JE, Scheibe R. Influence of the photoperiod on redox regulation and stress responses in Arabidopsis thaliana L. (Heynh.) plants under long- and short-day conditions. Planta 224: 380-393 (2006).

Becker B, Holtgrefe S, Jung S, Wunrau C, Kandlbinder A, Baier M, Dietz KJ, Backhausen JE, Scheibe R. Influence of the photoperiod on redox regulation and stress responses in Arabidopsis thaliana L. (Heynh.) plants under long- and short-day conditions. Planta 224: 481 (2006).

Becker JD, Boavida LC, Carneiro J, Haury M, Feijo JA. Transcriptional profiling of Arabidopsis tissues reveals the unique characteristics of the pollen transcriptome. Plant Physiol. 133: 713-725 (2003).

Becker JD, Feijo JA. How many genes are needed to make a pollen tube? Lessons from transcriptomics. Ann. Bot. (Lond.) 100: 1117-1123 (2007).

Beckers GJ, Jaskiewicz M, Liu Y, Underwood WR, He SY, Zhang S, Conrath U. Mitogen-activated protein kinases 3 and 6 are required for full priming of stress responses in Arabidopsis thaliana. Plant Cell 21: 944-953 (2009).

Beckmann K, Dzuibany C, Biehler K, Fock H, Hell R, Migge A, Becker TW. Photosynthesis and fluorescence quenching, and the mRNA levels of plastidic GS or of mitochondrial SHMT in the leaves of the wild-type and of the SHMT-deficient stm mutant of Arabidopsis thaliana in relation to the rate of photorespiration. Planta 202: 379-386 (1997).

Beclin C, Berthome R, Palauqui JC, Tepfer M, Vaucheret H. Infection of tobacco or Arabidopsis plants by CMV counteracts systemic post-transcriptional silencing of nonviral (trans)genes. Virology 252: 313-317 (1998).

Becnel J, Natarajan M, Kipp A, Braam J. Developmental expression patterns of Arabidopsis XTH genes reported by transgenes and Genevestigator. Plant Mol. Biol. 61: 451-467 (2006).

Bedhomme M, Hoffmann M, McCarthy EA, Gambonnet B, Moran RG, Rebeille F, Ravanel S. Folate metabolism in plants: an Arabidopsis homolog of the mammalian mitochondrial folate transporter mediates folate import into chloroplasts. J. Biol. Chem. 280: 34823-34831 (2005).

Bednarek P, Schneider B, Svatos A, Oldham NJ, Hahlbrock K. Structural complexity, differential response to infection, and tissue specificity of indolic and phenylpropanoid secondary metabolism in Arabidopsis roots. Plant Physiol. 138: 1058-1070 (2005).

Bednarek P, Winter J, Hamberger B, Oldham NJ, Schneider B, Tan J, Hahlbrock K. Induction of 3'-O-beta-D-ribofuranosyl adenosine during compatible, but not during incompatible, interactions of Arabidopsis thaliana or Lycopersicon esculentum with Pseudomonas syringae pathovar tomato. Planta 218: 668-672 (2004).

Bednarek SY, Reynolds TL, Schroeder M, Grabowski R, Hengst L, Gallwitz D, Raikhel NV. A small GTP-binding protein from Arabidopsis thaliana functionally complements the yeast YPT6 null mutant. Plant Physiol. 104: 591-596 (1994).

Beebo A, Thomas D, Der C, Sanchez L, Leborgne-Castel N, Marty F, Schoefs B, Bouhidel K. Life with and without AtTIP1;1, an Arabidopsis aquaporin preferentially localized in the apposing tonoplasts of adjacent vacuoles. Plant Mol. Biol. 70: 193-209 (2009).

Beeckman T, Przemeck GK, Stamatiou G, Lau R, Terryn N, De Rycke R, Inze D, Berleth T. Genetic complexity of cellulose synthase a gene function in Arabidopsis embryogenesis. Plant Physiol. 130: 1883-1893 (2002).

Beekwilder J, van Leeuwen W, van Dam NM, Bertossi M, Grandi V, Mizzi L, Soloviev M, Szabados L, Molthoff JW, Schipper B, Verbocht H, de Vos RC, Morandini P, Aarts MG, Bovy A. The impact of the absence of aliphatic glucosinolates on insect herbivory in Arabidopsis. PLoS ONE 3: e2068 (2008).

Beemster GT, Baskin TI. Analysis of cell division and elongation underlying the developmental acceleration of root growth in Arabidopsis thaliana. Plant Physiol. 116: 1515-1526 (1998).

Beemster GT, De Veylder L, Vercruysse S, West G, Rombaut D, Van Hummelen P, Galichet A, Gruissem W, Inze D, Vuylsteke M. Genome-wide analysis of gene expression profiles associated with cell cycle transitions in growing organs of Arabidopsis. Plant Physiol. 138: 734-743 (2005).

Beemster GT, De Vusser K, De Tavernier E, De Bock K, Inze D. Variation in growth rate between Arabidopsis ecotypes is correlated with cell division and A-type cyclin-dependent kinase activity. Plant Physiol. 129: 854-864 (2002).

Beffagna N, Lutzu I. Inhibition of catalase activity as an early response of Arabidopsis thaliana cultured cells to the phytotoxin fusicoccin. J. Exp. Bot. 58: 4183-4194 (2007).

Behal RH, Oliver DJ. Biochemical and molecular characterization of fumarase from plants: purification and characterization of the enzyme--cloning, sequencing, and expression of the gene. Arch. Biochem. Biophys. 348: 65-74 (1997).

Behal RH, Oliver DJ. NAD(+)-dependent isocitrate dehydrogenase from Arabidopsis thaliana. Characterization of two closely related subunits. Plant Mol. Biol. 36: 691-698 (1998).

Bei Q, Luan S. Functional expression and characterization of a plant K+ channel gene in a plant cell model. Plant J. 13: 857-865 (1998).

Beisson F, Koo AJ, Ruuska S, Schwender J, Pollard M, Thelen JJ, Paddock T, Salas JJ, Savage L, Milcamps A, Mhaske VB, Cho Y, Ohlrogge JB. Arabidopsis genes involved in acyl lipid metabolism. A 2003 census of the candidates, a study of the distribution of expressed sequence tags in organs, and a web-based database. Plant Physiol. 132: 681-697 (2003).

Beisson F, Li Y, Bonaventure G, Pollard M, Ohlrogge JB. The acyltransferase GPAT5 is required for the synthesis of suberin in seed coat and root of Arabidopsis. Plant Cell 19: 351-368 (2007).

Bekman EP, Saibo NJ, Di Cataldo A, Regalado AP, Ricardo CP, Rodrigues-Pousada C. Differential expression of four genes encoding 1-aminocyclopropane-1-carboxylate synthase in Lupinus albus during germination, and in response to indole-3-acetic acid and wounding. Planta 211: 663-672 (2000).

Belbahri L, Chevalier L, Bensaddek L, Gillet F, Fliniaux MA, Boerjan W, Inze D, Thomas D, Thomasset B. Different expression of an S-adenosylmethionine synthetase gene in transgenic tobacco callus modifies alkaloid biosynthesis. Biotechnol. Bioeng. 69: 11-20 (2000).

Belenghi B, Acconcia F, Trovato M, Perazzolli M, Bocedi A, Polticelli F, Ascenzi P, Delledonne M. AtCYS1, a cystatin from Arabidopsis thaliana, suppresses hypersensitive cell death. Eur. J. Biochem. 270: 2593-2604 (2003).

Belenghi B, Romero-Puertas MC, Vercammen D, Brackenier A, Inze D, Delledonne M, Van Breusegem F. Metacaspase activity of Arabidopsis thaliana is regulated by S-nitrosylation of a critical cysteine residue. J. Biol. Chem. 282: 1352-1358 (2007).

Belenghi B, Salomon M, Levine A. Caspase-like activity in the seedlings of Pisum sativum eliminates weaker shoots during early vegetative development by induction of cell death. J. Exp. Bot. 55: 889-897 (2004).

Beligni MV, Mayfield SP. Arabidopsis thaliana mutants reveal a role for CSP41a and CSP41b, two ribosome-associated endonucleases, in chloroplast ribosomal RNA metabolism. Plant Mol. Biol. 67: 389-401 (2008).

Beligni MV, Yamaguchi K, Mayfield SP. Chloroplast elongation factor ts pro-protein is an evolutionarily conserved fusion with the s1 domain-containing plastid-specific ribosomal protein-7. Plant Cell 16: 3357-3369 (2004).

Belin C, de Franco PO, Bourbousse C, Chaignepain S, Schmitter JM, Vavasseur A, Giraudat J, Barbier-Brygoo H, Thomine S. Identification of features regulating OST1 kinase activity and OST1 function in guard cells. Plant Physiol. 141: 1316-1327 (2006).

Belkhadir Y, Nimchuk Z, Hubert DA, Mackey D, Dangl JL. Arabidopsis RIN4 negatively regulates disease resistance mediated by RPS2 and RPM1 downstream or independent of the NDR1 signal modulator and is not required for the virulence functions of bacterial type III effectors AvrRpt2 or AvrRpm1. Plant Cell 16: 2822-2835 (2004).

Belkhadir Y, Subramaniam R, Dangl JL. Plant disease resistance protein signaling: NBS-LRR proteins and their partners. Curr. Opin. Plant Biol. 7: 391-399 (2004).

Belkhadir Y, Wang X, Chory J. Brassinosteroid signaling pathway. Sci. STKE 364: cm4 (2006).

Bell-Lelong DA, Cusumano JC, Meyer K, Chapple C. Cinnamate-4-hydroxylase expression in Arabidopsis. Regulation in response to development and the environment. Plant Physiol. 113: 729-738 (1997).

Bellaoui M, Gruissem W. Altered expression of the Arabidopsis ortholog of DCL affects normal plant development. Planta 219: 819-826 (2004).

Bellec Y, Harrar Y, Butaeye C, Darnet S, Bellini C, Faure JD. Pasticcino2 is a protein tyrosine phosphatase-like involved in cell proliferation and differentiation in Arabidopsis. Plant J. 32: 713-722 (2002).

Belles-Boix E, Hamant O, Witiak SM, Morin H, Traas J, Pautot V. KNAT6: an Arabidopsis homeobox gene involved in meristem activity and organ separation. Plant Cell 18: 1900-1907 (2006).

Belmonte MF, Tahir M, Schroeder D, Stasolla C. Overexpression of HBK3, a class I KNOX homeobox gene, improves the development of Norway spruce (Picea abies) somatic embryos. J. Exp. Bot. 58: 2851-2861 (2007).

Bemer M, Wolters-Arts M, Grossniklaus U, Angenent GC. The MADS domain protein DIANA acts together with AGAMOUS-LIKE80 to specify the central cell in Arabidopsis ovules. Plant Cell 20: 2088-2101 (2008).

Ben Zvi MM, Negre-Zakharov F, Masci T, Ovadis M, Shklarman E, Ben-Meir H, Tzfira T, Dudareva N, Vainstein A. Interlinking showy traits: co-engineering of scent and colour biosynthesis in flowers. Plant Biotechnol. J. 6: 403-415 (2008).

Ben-Naim O, Eshed R, Parnis A, Teper-Bamnolker P, Shalit A, Coupland G, Samach A, Lifschitz E. The CCAAT binding factor can mediate interactions between CONSTANS-like proteins and DNA. Plant J. 46: 462-476 (2006).

Ben-Nissan G, Cui W, Kim DJ, Yang Y, Yoo BC, Lee JY. Arabidopsis casein kinase 1-like 6 (CKL6) contains microtubule-binding domain and affects organization of cortical microtubules. Plant Physiol. 148: 1897-1907 (2008).

Ben-Tzvi Tzchori I, Perl A, Galili G. Lysine and threonine metabolism are subject to complex patterns of regulation in Arabidopsis. Plant Mol. Biol. 32: 727-734 (1996).

Bender J, Fink GR. A Myb homologue, ATR1, activates tryptophan gene expression in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A. 95: 5655-5660 (1998).

Benderoth M, Textor S, Windsor AJ, Mitchell-Olds T, Gershenzon J, Kroymann J. Positive selection driving diversification in plant secondary metabolism. Proc. Natl. Acad. Sci. U.S.A. 103: 9118-9123 (2006).

Benedetti CE, Arruda P. Altering the expression of the chlorophyllase gene ATHCOR1 in transgenic Arabidopsis caused changes in the chlorophyll-to-chlorophyllide ratio. Plant Physiol. 128: 1255-1263 (2002).

Benedetti CE, Xie D, Turner JG. Coi1-dependent expression of an Arabidopsis vegetative storage protein in flowers and siliques and in response to coronatine or methyl jasmonate. Plant Physiol. 109: 567-572 (1995).

Benedict C, Geisler M, Trygg J, Huner N, Hurry V. Consensus by democracy. Using meta-analyses of microarray and genomic data to model the cold acclimation signaling pathway in Arabidopsis. Plant Physiol. 141: 1219-1232 (2006).

Benedito VA, Torres-Jerez I, Murray JD, Andriankaja A, Allen S, Kakar K, Wandrey M, Verdier J, Zuber H, Ott T, Moreau S, Niebel A, Frickey T, Weiller G, He J, Dai X, Zhao PX, Tang Y, Udvardi MK. A gene expression atlas of the model legume Medicago truncatula. Plant J. 55: 504-513 (2008).

Benedito VA, Visser PB, van Tuyl JM, Angenent GC, de Vries SC, Krens FA. Ectopic expression of LLAG1, an AGAMOUS homologue from lily (Lilium longiflorum Thunb.) causes floral homeotic modifications in Arabidopsis. J. Exp. Bot. 55: 1391-1399 (2004).

Benghezal M, Wasteneys GO, Jones DA. The C-terminal dilysine motif confers endoplasmic reticulum localization to type I membrane proteins in plants. Plant Cell 12: 1179-1202 (2000).

Benhamed M, Bertrand C, Servet C, Zhou DX. Arabidopsis GCN5, HD1, and TAF1/HAF2 interact to regulate histone acetylation required for light-responsive gene expression. Plant Cell 18: 2893-2903 (2006).

Benhamed M, Martin-Magniette ML, Taconnat L, Bitton F, Servet C, De Clercq R, De Meyer B, Buysschaert C, Rombauts S, Villarroel R, Aubourg S, Beynon J, Bhalerao RP, Coupland G, Gruissem W, Menke FL, Weisshaar B, Renou JP, Zhou DX, Hilson P. Genome-scale Arabidopsis promoter array identifies targets of the histone acetyltransferase GCN5. Plant J. 56: 493-504 (2008).

Benjamins R, Ampudia CS, Hooykaas PJ, Offringa R. PINOID-mediated signaling involves calcium-binding proteins. Plant Physiol. 132: 1623-1630 (2003).

Benlloch R, d'Erfurth I, Ferrandiz C, Cosson V, Beltran JP, Canas LA, Kondorosi A, Madueno F, Ratet P. Isolation of mtpim proves Tnt1 a useful reverse genetics tool in Medicago truncatula and uncovers new aspects of AP1-like functions in legumes. Plant Physiol. 142: 972-983 (2006).

Bennett MD, Leitch IJ, Price HJ, Johnston JS. Comparisons with Caenorhabditis (approximately 100 Mb) and Drosophila (approximately 175 Mb) using flow cytometry show genome size in Arabidopsis to be approximately 157 Mb and thus approximately 25% larger than the Arabidopsis genome initiative estimate Ann. Bot. (Lond.) 91: 547-557 (2003).

Bennett RN, Wenke T, Freudenberg B, Mellon FA, Ludwig-Muller J. The tu8 mutation of Arabidopsis thaliana encoding a heterochromatin protein 1 homolog causes defects in the induction of secondary metabolite biosynthesis. Plant Biol. (Stuttg.) 7: 348-357 (2005).

Bennett T, Sieberer T, Willett B, Booker J, Luschnig C, Leyser O. The Arabidopsis MAX pathway controls shoot branching by regulating auxin transport. Curr. Biol. 16: 553-563 (2006).

Bennetzen JL, Coleman C, Liu R, Ma J, Ramakrishna W. Consistent over-estimation of gene number in complex plant genomes. Curr. Opin. Plant Biol. 7: 732-736 (2004).

Bennetzen JL, Ma J. The genetic colinearity of rice and other cereals on the basis of genomic sequence analysis. Curr. Opin. Plant Biol. 6: 128-133 (2003).

Benschop JJ, Jackson MB, Guhl K, Vreeburg RAM, Croker SJ, Peeters AJM, Voesenek LACJ. Contrasting interactions between ethylene and abscisic acid in Rumex species differing in submergence tolerance. Plant J. 44: 756-768 (2005).

Bensmihen S, Giraudat J, Parcy F. Characterization of three homologous basic leucine zipper transcription factors (bZIP) of the ABI5 family during Arabidopsis thaliana embryo maturation. J. Exp. Bot. 56: 597-603 (2005).

Bensmihen S, Rippa S, Lambert G, Jublot D, Pautot V, Granier F, Giraudat J, Parcy F. The homologous ABI5 and EEL transcription factors function antagonistically to fine-tune gene expression during late embryogenesis. Plant Cell 14: 1391-1403 (2002).

Bensmihen S, To A, Lambert G, Kroj T, Giraudat J, Parcy F. Analysis of an activated ABI5 allele using a new selection method for transgenic Arabidopsis seeds. FEBS Lett. 561: 127-131 (2004).

Bent AF. Arabidopsis in planta transformation. Uses, mechanisms, and prospects for transformation of other species. Plant Physiol. 124: 1540-1547 (2000).

Bentolila S, Chateigner-Boutin AL, Hanson MR. Ecotype allelic variation in C-to-U editing extent of a mitochondrial transcript identifies RNA-editing quantitative trait loci in Arabidopsis. Plant Physiol. 139: 2006-2016 (2005).

Bentsink L, Alonso-Blanco C, Vreugdenhil D, Tesnier K, Groot SP, Koornneef M. Genetic analysis of seed-soluble oligosaccharides in relation to seed storability of Arabidopsis. Plant Physiol. 124: 1595-1604 (2000).

Bentsink L, Jowett J, Hanhart CJ, Koornneef M. Cloning of DOG1, a quantitative trait locus controlling seed dormancy in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A. 103: 17042-17047 (2006).

Benveniste P. Biosynthesis and accumulation of sterols. Annu. Rev. Plant Biol. 55: 429-457 (2004).

Berardini TZ, Mundodi S, Reiser L, Huala E, Garcia-Hernandez M, Zhang P, Mueller LA, Yoon J, Doyle A, Lander G, Moseyko N, Yoo D, Xu I, Zoeckler B, Montoya M, Miller N, Weems D, Rhee SY. Functional annotation of the Arabidopsis genome using controlled vocabularies. Plant Physiol. 135: 745-755 (2004).

Berberich T, Harada M, Sugawara K, Kodama H, Iba K, Kusano T. Two maize genes encoding omega-3 fatty acid desaturase and their differential expression to temperature. Plant Mol. Biol. 36: 297-306 (1998).

Berdy SE, Kudla J, Gruissem W, Gillaspy GE. Molecular characterization of At5PTase1, an inositol phosphatase capable of terminating inositol trisphosphate signaling. Plant Physiol. 126: 801-810 (2001).

Berezin I, Mizrachy-Dagry T, Brook E, Mizrahi K, Elazar M, Zhuo S, Saul-Tcherkas V, Shaul O. Overexpression of AtMHX in tobacco causes increased sensitivity to Mg2+, Zn2+, and Cd2+ ions, induction of V-ATPase expression, and a reduction in plant size. Plant Cell Rep. 27: 939-949 (2008).

Berg M, Parbel A, Pettersen H, Fenyo D, Bjorkesten L. Reproducibility of LC-MS-based protein identification. J. Exp. Bot. 57: 1509-1514 (2006).

Berg M, Rogers R, Muralla R, Meinke D. Requirement of aminoacyl-tRNA synthetases for gametogenesis and embryo development in Arabidopsis. Plant J. 44: 866-878 (2005).

Bergantino E, Sandona D, Cugini D, Bassi R. The photosystem II subunit CP29 can be phosphorylated in both C3 and C4 plants as suggested by sequence analysis. Plant Mol. Biol. 36: 11-22 (1998).

Bergelson J, Purrington CB, Palm CJ, Lopez-Gutierrez JC. Costs of resistance: a test using transgenic Arabidopsis thaliana. Proc. Roy. Soc. Lond. B. Biol. Sci. 263: 1659-1663 (1996).

Berger B, Stracke R, Yatusevich R, Weisshaar B, Flugge UI, Gigolashvili T. A simplified method for the analysis of transcription factor-promoter interactions that allows high-throughput data generation. Plant J. 50: 911-916 (2007).

Berger F. Endosperm: the crossroad of seed development. Curr. Opin. Plant Biol. 6: 42-50 (2003).

Berger S. Jasmonate-related mutants of Arabidopsis as tools for studying stress signaling. Planta 214: 497-504 (2002).

Berger S, Benediktyova Z, Matous K, Bonfig K, Mueller MJ, Nedbal L, Roitsch T. Visualization of dynamics of plant-pathogen interaction by novel combination of chlorophyll fluorescence imaging and statistical analysis: differential effects of virulent and avirulent strains of P. syringae and of oxylipins on A. thaliana. J. Exp. Bot. 58: 797-806 (2007).

Bergmann DC, Lukowitz W, Somerville CR. Stomatal development and pattern controlled by a MAPKK kinase. Science 304: 1494-1497 (2004).

Bergmann DC, Sack FD. Stomatal development. Annu. Rev. Plant Biol. 58: 163-181 (2007).

Bergmuller E, Porfirova S, Dormann P. Characterization of an Arabidopsis mutant deficient in gamma-tocopherol methyltransferase. Plant Mol. Biol. 52: 1181-1190 (2003).

Berkowitz O, Jost R, Pollmann S, Masle J. Characterization of TCTP, the translationally controlled tumor protein, from Arabidopsis thaliana. Plant Cell 20: 3430-3447 (2008).

Berlyn MB, Last RL, Fink GR. A gene encoding the tryptophan synthase beta subunit of Arabidopsis thaliana. Proc. Natl. Acad. Sci. U.S.A. 86: 4604-4608 (1989).

Bernal AJ, Jensen JK, Harholt J, Sřrensen S, Moller I, Blaukopf C, Johansen B, de Lotto R, Pauly M, Scheller HV, Willats WG. Disruption of ATCSLD5 results in reduced growth, reduced xylan and homogalacturonan synthase activity and altered xylan occurrence in Arabidopsis. Plant J. 52: 791-802 (2007).

Bernal AJ, Yoo CM, Mutwil M, Jensen JK, Hou G, Blaukopf C, Sorensen I, Blancaflor EB, Scheller HV, Willats WG. Functional analysis of the cellulose synthase like genes CSLD1, CSLD2 and CSLD4 in tip growing Arabidopsis cells. Plant Physiol. 148: 1238-1253 (2008).

Bernard C, Roosens N, Czernic P, Lebrun M, Verbruggen N. A novel CPx-ATPase from the cadmium hyperaccumulator Thlaspi caerulescens. FEBS Lett. 569: 140-148 (2004).

Bernasconi P, Walters EW, Woodworth AR, Siehl DL, Stone TE, Subramanian MV. Functional expression of Arabidopsis thaliana anthranilate synthase subunit I in Escherichia coli. Plant Physiol. 106: 353-358 (1994).

Bernhardt A, Lechner E, Hano P, Schade V, Dieterle M, Anders M, Dubin MJ, Benvenuto G, Bowler C, Genschik P, Hellmann H. CUL4 associates with DDB1 and DET1 and its downregulation affects diverse aspects of development in Arabidopsis thaliana. Plant J. 47: 591-603 (2006).

Bernhardt C, Tierney ML. Expression of AtPRP3, a proline-rich structural cell wall protein from Arabidopsis, is regulated by cell-type-specific developmental pathways involved in root hair formation. Plant Physiol. 122: 705-714 (2000).

Bernier-Villamor L, Navarro E, Sevilla F, Lazaro JJ. Cloning and characterization of a 2-Cys peroxiredoxin from Pisum sativum. J. Exp. Bot. 55: 2191-2199 (2004).

Bernoux M, Timmers T, Jauneau A, Brie C, de Wit PJ, Marco Y, Deslandes L. RD19, an Arabidopsis cysteine protease required for RRS1-R-mediated resistance, is relocalized to the nucleus by the Ralstonia solanacearum PopP2 effector. Plant Cell 20: 2252-2264 (2008).

Berr A, Pecinka A, Meister A, Kreth G, Fuchs J, Blattner FR, Lysak MA, Schubert I. Chromosome arrangement and nuclear architecture but not centromeric sequences are conserved between Arabidopsis thaliana and Arabidopsis lyrata. Plant J. 48: 771-783 (2006).

Berrocal-Lobo M, Molina A, Solano R. Constitutive expression of ETHYLENE-RESPONSE-FACTOR1 in Arabidopsis confers resistance to several necrotrophic fungi. Plant J. 29: 23-32 (2002).

Bertin C, Weston LA, Huang T, Jander G, Owens T, Meinwald J, Schroeder FC. Grass roots chemistry: meta-tyrosine, an herbicidal nonprotein amino acid. Proc. Natl. Acad. Sci. U.S.A. 104: 16964-16969 (2007).

Bertl A, Anderson JA, Slayman CL, Sentenac H, Gaber RF. Inward and outward rectifying potassium currents in Saccharomyces cerevisiae mediated by endogenous and heterelogously expressed ion channels. Folia Microbiol. (Praha) 39: 507-509 (1994).

Besson-Bard A, Gravot A, Richaud P, Auroy P, Duc C, Gaymard F, Taconnat L, Renou JP, Pugin A, Wendehenne D. Nitric oxide contributes to cadmium toxicity in Arabidopsis by promoting cadmium accumulation in roots and by up-regulating genes related to iron uptake. Plant Physiol. 149: 1302-1315 (2009).

Bethke PC, Gubler F, Jacobsen JV, Jones RL. Dormancy of Arabidopsis seeds and barley grains can be broken by nitric oxide. Planta 219: 847-855 (2004).

Bethke PC, Libourel IG, Aoyama N, Chung YY, Still DW, Jones RL.. The Arabidopsis aleurone layer responds to nitric oxide, gibberellin, and abscisic acid and is sufficient and necessary for seed dormancy Plant Physiol. 143: 1173-1188 (2007).

Bethke PC, Libourel IG, Jones RL. Nitric oxide reduces seed dormancy in Arabidopsis. J. Exp. Bot. 57: 517-526 (2006).

Bethke PC, Libourel IG, Reinohl V, Jones RL. Sodium nitroprusside, cyanide, nitrite, and nitrate break Arabidopsis seed dormancy in a nitric oxide-dependent manner. Planta 223: 805-812 (2006).

Beuve N, Rispail N, Laine P, Cliquet JB, Ourry A, Le Deunff E. Putative role of gamma-aminobutyric acid (GABA) as a longdistance signal in up-regulation of nitrate uptake in Brassica napus L.. Plant Cell Environ. 27: 1035-1046 (2004).

Bevan M, Bancroft I, Mewes HW, Martienssen R, McCombie R. Clearing a path through the jungle: progress in Arabidopsis genomics. Bioessays 21: 110-120 (1999).

Bevan M, Mayer K, White O, Eisen JA, Preuss D, Bureau T, Salzberg SL, Mewes H. Sequence and analysis of the Arabidopsis genome. Curr. Opin. Plant Biol. 4: 105-110 (2001).

Bevan M, Walsh S. Positioning Arabidopsis in plant biology. A key step toward unification of plant research. Plant Physiol. 135: 602-606 (2004).

Beveridge CA. Axillary bud outgrowth: sending a message. Curr. Opin. Plant Biol. 9: 35-40 (2006).

Beyhl D, Hortensteiner S, Martinoia E, Farmer EE, Fromm J, Marten I, Hedrich R. The fou2 mutation in the major vacuolar cation channel TPC1 confers tolerance to inhibitory luminal calcium. Plant J. 58: 715-723 (2009).

Bezerra IC, Michaels SD, Schomburg FM, Amasino RM. Lesions in the mRNA cap-binding gene ABA HYPERSENSITIVE 1 suppress FRIGIDA-mediated delayed flowering in Arabidopsis. Plant J. 40: 112-119 (2004).

Bezhani S, Winter C, Hershman S, Wagner JD, Kennedy JF, Kwon CS, Pfluger J, Su Y, Wagner D. Unique, shared, and redundant roles for the Arabidopsis SWI/SNF chromatin remodeling ATPases BRAHMA and SPLAYED. Plant Cell 19: 403-416 (2007).

Bhalla R, Narasimhan K, Swarup S. Metabolomics and its role in understanding cellular responses in plants. Plant Cell Rep. 24: 562-571 (2005).

Bhandari S, Fujino T, Thammanagowda S, Zhang D, Xu F, Joshi CP. Xylem-specific and tension stress-responsive coexpression of KORRIGAN endoglucanase and three secondary wall-associated cellulose synthase genes in aspen trees. Planta 224: 828-837 (2006).

Bharti AK, Khurana JP. Mutants of Arabidopsis as tools to understand the regulation of phenylpropanoid pathway and UVB protection mechanisms. Photochem. Photobiol. 65: 765-776 (1997).

Bharti K, Von Koskull-Doring P, Bharti S, Kumar P, Tintschl-Korbitzer A, Treuter E, Nover L. Tomato heat stress transcription factor HsfB1 represents a novel type of general transcription coactivator with a histone-like motif interacting with the plant CREB binding protein ortholog HAC1. Plant Cell 16: 1521-1535 (2004).

Bhatt AM, Lister C, Crawford N, Dean C. The transposition frequency of Tag1 elements is increased in transgenic Arabidopsis lines. Plant Cell 10: 427-434 (1998).

Bhattacharjee S, Lee LY, Oltmanns H, Cao H, Veena, Cuperus J, Gelvin SB. IMPa-4, an Arabidopsis importin alpha isoform, is preferentially involved in Agrobacterium-mediated plant transformation. Plant Cell 20: 2661-2680 (2008).

Bhattarai KK, Li Q, Liu Y, Dinesh-Kumar SP, Kaloshian I. The MI-1-mediated pest resistance requires Hsp90 and Sgt1. Plant Physiol. 144: 312-323 (2007).

Bhave NS, Veley KM, Nadeau JA, Lucas JR, Bhave SL, Sack FD. TOO MANY MOUTHS promotes cell fate progression in stomatal development of Arabidopsis stems. Planta 229: 357-367 (2009).

Bi YM, Wang RL, Zhu T, Rothstein SJ. Global transcription profiling reveals differential responses to chronic nitrogen stress and putative nitrogen regulatory components in Arabidopsis. BMC Genomics 8: 281 (2007).

Bi YM, Zhang Y, Signorelli T, Zhao R, Zhu T, Rothstein S. Genetic analysis of Arabidopsis GATA transcription factor gene family reveals a nitrate-inducible member important for chlorophyll synthesis and glucose sensitivity. Plant J. 44: 680-692 (2005).

Bianchi MW, Damerval C, Vartanian N. Identification of proteins regulated by cross-talk between drought and hormone pathways in Arabidopsis wild-type and auxin-insensitive mutants, axr1 and axf2. Funct. Plant Biol. 29: 55-61 (2002).

Biasi R, Falasca G, Speranza A, De Stradis A, Scoccianti V, Franceschetti M, Bagni N, Altamura MM. Biochemical and ultrastructural features related to male sterility in the dioecious species Actinidia deliciosa. Plant Physiol. Biochem. 39: 395-406 (2001).

Bibikova TN, Zhigilei A, Gilroy S. Root hair growth in Arabidopsis thaliana is directed by calcium and an endogenous polarity. Planta 203: 495-505 (1997).

Bick JA, Aslund F, Chen Y, Leustek T. Glutaredoxin function for the carboxyl-terminal domain of the plant-type 5'-adenylylsulfate reductase. Proc. Natl. Acad. Sci. U.S.A. 95: 8404-8409 (1998).

Bick JA, Setterdahl AT, Knaff DB, Chen Y, Pitcher LH, Zilinskas BA, Leustek T. Regulation of the plant-type 5'-adenylyl sulfate reductase by oxidative stress. Biochemistry 40: 9040-9048 (2001).

Bidwell SD, Crawford SA, Woodrow IE, Sommer-Knudsen J, Marshall AT. Sub-cellular localization of Ni in the hyperaccumulator, Hybanthus floribundus (Lindley) F. Muell. Plant Cell Environ. 27: 705-716 (2004).

Biela A, Grote K, Otto B, Hoth S, Hedrich R, Kaldenhoff R. The Nicotiana tabacum plasma membrane aquaporin NtAQP1 is mercury-insensitive and permeable for glycerol. Plant J. 18: 565-570 (1999).

Biemelt S, Tschiersch H, Sonnewald U. Impact of altered gibberellin metabolism on biomass accumulation, lignin biosynthesis, and photosynthesis in transgenic tobacco plants. Plant Physiol. 135: 254-265 (2004).

Bienert GP, Moller AL, Kristiansen KA, Schulz A, Moller IM, Schjoerring JK, Jahn TP. Specific aquaporins facilitate the diffusion of hydrogen peroxide across membranes. J. Biol. Chem. 282: 1183-1192 (2007).

Bieniawska Z, Paul Barratt DH, Garlick AP, Thole V, Kruger NJ, Martin C, Zrenner R, Smith AM. Analysis of the sucrose synthase gene family in Arabidopsis. Plant J. 49: 810-828 (2007).

Bies-Etheve N, da Silva Conceicao A, Giraudat J, Koornneef M, Leon-Kloosterziel K, Valon C, Delseny M. Importance of the B2 domain of the Arabidopsis ABI3 protein for Em and 2S albumin gene regulation. Plant Mol. Biol. 40: 1045-1054 (1999).

Bies-Etheve N, Gaubier-Comella P, Debures A, Lasserre E, Jobet E, Raynal M, Cooke R, Delseny M. Inventory, evolution and expression profiling diversity of the LEA (late embryogenesis abundant) protein gene family in Arabidopsis thaliana. Plant Mol. Biol. 67: 107-124 (2008).

Biesgen C, Weiler EW. Structure and regulation of OPR1 and OPR2, two closely related genes encoding 12-oxophytodienoic acid-10,11-reductases from Arabidopsis thaliana. Planta 208: 155-165 (1999).

Bieza K, Lois R. An Arabidopsis mutant tolerant to lethal ultraviolet-B levels shows constitutively elevated accumulation of flavonoids and other phenolics. Plant Physiol. 126: 1105-1115 (2001).

Bihler H, Eing C, Hebeisen S, Roller A, Czempinski K, Bertl A. TPK1 is a vacuolar ion channel different from the slow-vacuolar cation channel. Plant Physiol. 139: 417-424 (2005).

Bilodeau P, Udvardi MK, Peacock WJ, Dennis ES. A prolonged cold treatment-induced cytochrome P450 gene from Arabidopsis thaliana. Plant Cell Environ. 22: 791-800 (1999).

Bilyeu KD, Cole JL, Laskey JG, Riekhof WR, Esparza TJ, Kramer MD, Morris RO. Molecular and biochemical characterization of a cytokinin oOxidase from maize. Plant Physiol. 125: 378-386 (2001).

Binarova P, Cenklova V, Prochazkova J, Doskocilova A, Volc J, Vrlik M, Bogre L. Gamma-tubulin is essential for acentrosomal microtubule nucleation and coordination of late mitotic events in Arabidopsis. Plant Cell 18: 1199-1212 (2006).

Binder BM, Mortimore LA, Stepanova AN, Ecker JR, Bleecker AB. Short-term growth responses to ethylene in Arabidopsis seedlings are EIN3/EIL1 independent. Plant Physiol. 136: 2921-2927 (2004).

Binder BM, O'malley RC, Wang W, Moore JM, Parks BM, Spalding EP, Bleecker AB. Arabidopsis seedling growth response and recovery to ethylene. A kinetic analysis. Plant Physiol. 136: 2913-2920 (2004).

Binder BM, O'malley RC, Wang W, Zutz TC, Bleecker AB. Ethylene stimulates nutations that are dependent on the ETR1 receptor. Plant Physiol. 142: 1690-1700 (2006).

Binder BM, Walker JM, Gagne JM, Emborg TJ, Hemmann G, Bleecker AB, Vierstra RD. The Arabidopsis EIN3 binding F-Box proteins EBF1 and EBF2 have distinct but overlapping roles in ethylene signaling. Plant Cell 19: 509-523 (2007).

Bindschedler LV, Dewdney J, Blee KA, Stone JM, Asai T, Plotnikov J, Denoux C, Hayes T, Gerrish C, Davies DR, Ausubel FM, Paul Bolwell G. Peroxidase-dependent apoplastic oxidative burst in Arabidopsis required for pathogen resistance. Plant J. 47: 851-863 (2006).

Bindschedler LV, Palmblad M, Cramer R. Hydroponic isotope labelling of entire plants (HILEP) for quantitative plant proteomics; an oxidative stress case study. Phytochemistry 69: 1962-1972 (2008).

Bird D, Beisson F, Brigham A, Shin J, Greer S, Jetter R, Kunst L, Wu X, Yephremov A, Samuels L. Characterization of Arabidopsis ABCG11/WBC11, an ATP binding cassette (ABC) transporter that is required for cuticular lipid secretion. Plant J. 52: 485-498 (2007).

Birnbaum K, Benfey PN. Network building: transcriptional circuits in the root. Curr. Opin. Plant Biol. 7: 582-588 (2004).

Birschwilks M, Sauer N, Scheel D, Neumann S. Arabidopsis thaliana is a susceptible host plant for the holoparasite Cuscuta spec. Planta 226: 1231-1241 (2007).

Bisanz C, Begot L, Carol P, Perez P, Bligny M, Pesey H, Gallois JL, Lerbs-Mache S, Mache R. The Arabidopsis nuclear DAL gene encodes a chloroplast protein which is required for the maturation of the plastid ribosomal RNAs and is essential for chloroplast differentiation. Plant Mol. Biol. 51: 651-663 (2003).

Bischoff F, Vahlkamp L, Molendijk A, Palme K. Localization of AtROP4 and AtROP6 and interaction with the guanine nucleotide dissociation inhibitor AtRhoGDI1 from Arabidopsis. Plant Mol. Biol. 42: 515-530 (2000).

Bischoff V, Cookson SJ, Wu S, Scheible WR. Thaxtomin A affects CESA-complex density, expression of cell wall genes, cell wall composition, and causes ectopic lignification in Arabidopsis thaliana seedlings. J. Exp. Bot. 60: 955-965 (2009).

Biskup B, Scharr H, Fischbach A, Wiese-Klinkenberg A, Schurr U, Walter A. Diel growth cycle of isolated leaf discs analyzed with a novel, high-throughput three-dimensional imaging method is identical to that of intact leaves. Plant Physiol. 149: 1452-1461 (2009).

Bittner-Eddy PD, Allen RL, Rehmany AP, Birch P, Beynon JL. Use of suppression subtractive hybridization to identify downy mildew genes expressed during infection of Arabidopsis thaliana. Mol. Plant Pathol. 4: 501-507 (2003).

Blacklock BJ, Jaworski JG. Studies into factors contributing to substrate specificity of membrane-bound 3-ketoacyl-CoA synthases. Eur. J. Biochem. 269: 4789-4798 (2002).

Blackman LM, Overall RL. Structure and function of plasmodesmata. Aust. J. Plant Physiol. 28: 709-727 (2001).

Blakeslee JJ, Peer WA, Murphy AS. Auxin transport. Curr. Opin. Plant Biol. 8: 494-500 (2005).

Blanc G, Barakat A, Guyot R, Cooke R, Delseny M. Extensive duplication and reshuffling in the Arabidopsis genome. Plant Cell 12: 1093-1102 (2000).

Blanc G, Wolfe KH. Functional divergence of duplicated genes formed by polyploidy during Arabidopsis evolution. Plant Cell 16: 1679-1691 (2004).

Blanc G, Wolfe KH. Widespread paleopolyploidy in model plant species inferred from age distributions of duplicate genes. Plant Cell 16: 1667-1678 (2004).

Blancaflor EB, Hou G, Chapman KD. Elevated levels of N-lauroylethanolamine, an endogenous constituent of desiccated seeds, disrupt normal root development in Arabidopsis thaliana seedlings. Planta 217: 206-217 (2003).

Blanco F, Garreton V, Frey N, Dominguez C, Perez-Acle T, Van der Straeten D, Jordana X, Holuigue L. Identification of NPR1-dependent and independent genes early induced by salicylic acid treatment in Arabidopsis. Plant Mol. Biol. 59: 927-944 (2005).

Blanco F, Salinas P, Cecchini NM, Jordana X, Van Hummelen P, Alvarez ME, Holuigue L. Early genomic responses to salicylic acid in Arabidopsis. Plant Mol. Biol. 70: 79-102 (2009).

Blanvillain R, Kim JH, Wu S, Lima A, Ow DW. OXIDATIVE STRESS 3 is a chromatin-associated factor involved in tolerance to heavy metals and oxidative stress. Plant J. 57: 654-665 (2009).

Blasing OE, Gibon Y, Gunther M, Hohne M, Morcuende R, Osuna D, Thimm O, Usadel B, Scheible WR, Stitt M. Sugars and circadian regulation make major contributions to the global regulation of diurnal gene expression in Arabidopsis. Plant Cell 17: 3257-3281 (2005).

Blatt MR, Maurousset L, Meharg AA. High-affinity NO(3-)-H+ cotransport in the fungus Neurospora: induction and control by pH and membrane voltage. J. Membr. Biol. 160: 59-76 (1997).

Blaudez D, Kohler A, Martin F, Sanders D, Chalot M. Poplar metal tolerance protein 1 confers zinc tolerance and is an oligomeric vacuolar zinc transporter with an essential leucine zipper motif. Plant Cell 15: 2911-2928 (2003).

Blazquez MA, Ahn JH, Weigel D. A thermosensory pathway controlling flowering time in Arabidopsis thaliana. Nat. Genet. 33: 168-171 (2003).

Blazquez MA, Green R, Nilsson O, Sussman MR, Weigel D. Gibberellins promote flowering of Arabidopsis by activating the LEAFY promoter. Plant Cell 10: 791-800 (1998).

Blazquez MA, Trenor M, Weigel D. Independent control of gibberellin biosynthesis and flowering time by the circadian clock in Arabidopsis. Plant Physiol. 130: 1770-1775 (2002).

Blazquez MA, Weigel D. Independent regulation of flowering by phytochrome B and gibberellins in Arabidopsis. Plant Physiol. 120: 1025-1032 (1999).

Bleecker AB. Genetic analysis of ethylene responses in Arabidopsis thaliana. Symp. Soc. Exp. Biol. 45: 149-158 (1991).

Bleecker AB. Ethylene perception and signaling: an evolutionary perspective. Trends Plant Sci. 4: 269-274 (1999).

Bleecker AB, Esch JJ, Hall AE, Rodriguez FI, Binder BM. The ethylene-receptor family from Arabidopsis: structure and function. Philos. Trans. R. Soc. Lond. B. Biol. Sci. 353: 1405-1412 (1998).

Bleecker AB, Kende H. Ethylene: A gaseous signal molecule in plants. Annu. Rev. Cell Dev. Biol. 16: 1-18 (2000).

Bleeker PM, Hakvoort HW, Bliek M, Souer E, Schat H. Enhanced arsenate reduction by a CDC25-like tyrosine phosphatase explains increased phytochelatin accumulation in arsenate-tolerant Holcus lanatus. Plant J. 45: 917-929 (2006).

Bleuyard JY, Gallego ME, Savigny F, White CI. Differing requirements for the Arabidopsis Rad51 paralogs in meiosis and DNA repair. Plant J. 41: 533-545 (2005).

Blevins DG, Lukaszewski KM. Boron in plant structure and function. Annu. Rev. Plant Physiol. Plant Mol. Biol. 49: 481-500 (1998).

Bleys A, Van Houdt H, Depicker A. Down-regulation of endogenes mediated by a transitive silencing signal. RNA 12: 1633-1639 (2006).

Block MA, Tewari AK, Albrieux C, Marechal E, Joyard J. The plant S-adenosyl-L-methionine:Mg-protoporphyrin IX methyltransferase is located in both envelope and thylakoid chloroplast membranes. Eur. J. Biochem. 269: 240-248 (2002).

Blodner C, Goebel C, Feussner I, Gatz C, Polle A. Warm and cold parental reproductive environments affect seed properties, fitness, and cold responsiveness in Arabidopsis thaliana progenies. Plant Cell Environ. 30: 165-175 (2007).

Bloss T, Clemens S, Nies DH. Characterization of the ZAT1p zinc transporter from Arabidopsis thaliana in microbial model organisms and reconstituted proteoliposomes. Planta 214: 783-791 (2002).

Blount JW, Masoud S, Sumner LW, Huhman D, Dixon RA. Over-expression of cinnamate 4-hydroxylase leads to increased accumulation of acetosyringone in elicited tobacco cell-suspension cultures. Planta 214: 902-910 (2002).

Blum DE, Neff MM, Van Volkenburgh E. Light-stimulated cotyledon expansion in the blu3 and hy4 mutants of Arabidopsis thaliana. Plant Physiol. 105: 1433-1436 (1994).

Blum R, Beck A, Korte A, Stengel A, Letzel T, Lendzian K, Grill E. Function of phytochelatin synthase in catabolism of glutathione-conjugates. Plant J. 49: 740-749 (2007).

Blumwald E. Engineering salt tolerance in plants. Biotechnol. Genet. Eng. Rev. 20: 261-275 (2003).

Boccalandro HE, Mazza CA, Mazzella MA, Casal JJ, Ballare CL. Ultraviolet B radiation enhances a phytochrome-B-mediated photomorphogenic response in Arabidopsis. Plant Physiol. 126: 780-788 (2001).

Boccalandro HE, Ploschuk EL, Yanovsky MJ, Sanchez RA, Gatz C, Casal JJ. Increased phytochrome B alleviates density effects on tuber yield of field potato crops. Plant Physiol. 133: 1539-1546 (2003).

Boccalandro HE, Rugnone ML, Moreno JE, Ploschuk EL, Serna L, Yanovsky MJ, Casal JJ. Phytochrome B enhances photosynthesis at the expense of water-use efficiency in Arabidopsis. Plant Physiol. 150: 1083-1092 (2009).

Boccara M, Mills CE, Zeier J, Anzi C, Lamb C, Poole RK, Delledonne M. Flavohaemoglobin HmpX from Erwinia chrysanthemi confers nitrosative stress tolerance and affects the plant hypersensitive reaction by intercepting nitric oxide produced by the host. Plant J. 43: 226-237 (2005).

Boch J, Joardar V, Gao L, Robertson TL, Lim M, Kunkel BN. Identification of Pseudomonas syringae pv. tomato genes induced during infection of Arabidopsis thaliana. Mol. Microbiol. 44: 73-88 (2002).

Bock KW, Honys D, Ward JM, Padmanaban S, Nawrocki EP, Hirschi KD, Twell D, Sze H. Integrating membrane transport with male gametophyte development and function through transcriptomics. Plant Physiol. 140: 1151-1168 (2006).

Bockenhoff A, Prior DA, Grundler FM, Oparka KJ. Induction of phloem unloading in Arabidopsis thaliana roots by the parasitic nematode Heterodera schachtii. Plant Physiol. 112: 1421-1427 (1996).

Boddi B, Loudeche R, Franck F. Delayed chlorophyll accumulation and pigment photodestruction in the epicotyls of dark-grown pea (Pisum sativum). Physiol. Plant. 125: 365-372 (2005).

Boerjan W, Cervera MT, Delarue M, Beeckman T, Dewitte W, Bellini C, Caboche M, Van Onckelen H, Van Montagu M, Inze D. Superroot, a recessive mutation in Arabidopsis, confers auxin overproduction. Plant Cell 7: 1405-1419 (1995).

Boerjan W, Vuylsteke M. Integrative genetical genomics in Arabidopsis. Nat. Genet. 41: 144-145 (2009).

Bogdanova N, Bork C, Hell R. Cysteine biosynthesis in plants: isolation and functional identification of a cDNA encoding a serine acetyltransferase from Arabidopsis thaliana. FEBS Lett. 358: 43-47 (1995).

Bogdanova N, Hell R. Cysteine synthesis in plants: protein-protein interactions of serine acetyltransferase from Arabidopsis thaliana. Plant J. 11: 251-262 (1997).

Bogre L, Okresz L, Henriques R, Anthony RG. Growth signalling pathways in Arabidopsis and the AGC protein kinases. Trends Plant Sci. 8: 424-431 (2003).

Bogs J, Bourbouloux A, Cagnac O, Wachter A, Rausch T, Delrot S. Functional characterization and expression analysis of a glutathione transporter, BjGT1, from Brassica juncea: evidence for regulation by heavy metal exposure. Plant Cell Environ. 26: 1703-1711 (2003).

Bohlmann J, Martin D, Oldham NJ, Gershenzon J. Terpenoid secondary metabolism in Arabidopsis thaliana: cDNA cloning, characterization, and functional expression of a myrcene/(E)-beta-ocimene synthase. Arch. Biochem. Biophys. 375: 261-269 (2000).

Bohman S, Staal J, Thomma BP, Wang M, Dixelius C. Characterisation of an Arabidopsis-Leptosphaeria maculans pathosystem: resistance partially requires camalexin biosynthesis and is independent of salicylic acid, ethylene and jasmonic acid signalling. Plant J. 37: 9-20 (2004).

Bohme K, Li Y, Charlot F, Grierson C, Marrocco K, Okada K, Laloue M, Nogue F. The Arabidopsis COW1 gene encodes a phosphatidylinositol transfer protein essential for root hair tip growth. Plant J. 40: 686-698 (2004).

Bohmer M, Romeis T. A chemical-genetic approach to elucidate protein kinase function in planta. Plant Mol. Biol. 65: 817-827 (2007).

Bohmert K, Balbo I, Kopka J, Mittendorf V, Nawrath C, Poirier Y, Tischendorf G, Trethewey RN, Willmitzer L. Transgenic Arabidopsis plants can accumulate polyhydroxybutyrate to up to 4% of their fresh weight. Planta 211: 841-845 (2000).

Bohmert K, Balbo I, Steinbuchel A, Tischendorf G, Willmitzer L. Constitutive expression of the beta-ketothiolase gene in transgenic plants. A major obstacle for obtaining polyhydroxybutyrate-producing plants. Plant Physiol. 128: 1282-1290 (2002).

Boivin K, Acarkan A, Mbulu RS, Clarenz O, Schmidt R. The Arabidopsis genome sequence as a tool for genome analysis in Brassicaceae. A comparison of the Arabidopsis and Capsella rubella genomes. Plant Physiol. 135: 735-744 (2004).

Boldt R, Edner C, Kolukisaoglu U, Hagemann M, Weckwerth W, Wienkoop S, Morgenthal K, Bauwe H. D-GLYCERATE 3-KINASE, the last unknown enzyme in the photorespiratory cycle in Arabidopsis, belongs to a novel kinase family. Plant Cell 17: 2413-2420 (2005).

Bollenbach TJ, Sharwood RE, Gutierrez R, Lerbs-Mache S, Stern DB. The RNA-binding proteins CSP41a and CSP41b may regulate transcription and translation of chloroplast-encoded RNAs in Arabidopsis. Plant Mol. Biol. 69: 541-552 (2009).

Bolognese CP, McGraw P. The isolation and characterization in yeast of a gene for Arabidopsis S-adenosylmethionine:phospho-ethanolamine N-methyltransferase. Plant Physiol. 124: 1800-1813 (2000).

Bolter B, Sharma R, Soll J. Localisation of Arabidopsis NDPK2-revisited. Planta 226: 1059-1065 (2007).

Bolwell GP, Bindschedler LV, Blee KA, Butt VS, Davies DR, Gardner SL, Gerrish C, Minibayeva F. The apoplastic oxidative burst in response to biotic stress in plants: a three-component system. J. Exp. Bot. 53: 1367-1376 (2002).

Bonardi V, Pesaresi P, Becker T, Schleiff E, Wagner R, Pfannschmidt T, Jahns P, Leister D. Photosystem II core phosphorylation and photosynthetic acclimation require two different protein kinases. Nature 437: 1179-1182 (2005).

Bonaventure G, Bao X, Ohlrogge J, Pollard M. Metabolic responses to the reduction in palmitate caused by disruption of the FATB gene in Arabidopsis. Plant Physiol. 135: 1269-1279 (2004).

Bonaventure G, Beisson F, Ohlrogge J, Pollard M. Analysis of the aliphatic monomer composition of polyesters associated with Arabidopsis epidermis: occurrence of octadeca-cis-6, cis-9-diene-1,18-dioate as the major component. Plant J. 40: 920-930 (2004).

Bonaventure G, Gfeller A, Proebsting WM, Hortensteiner S, Chetelat A, Martinoia E, Farmer EE. A gain-of-function allele of TPC1 activates oxylipin biogenesis after leaf wounding in Arabidopsis. Plant J. 49: 889-898 (2007).

Bonaventure G, Gfeller A, Rodriguez VM, Armand F, Farmer EE. The fou2 gain-of-function allele and the wild-type allele of Two Pore Channel 1 contribute to different extents or by different mechanisms to defense gene expression in Arabidopsis. Plant Cell Physiol. 48: 1775-1789 (2007).

Bonaventure G, Ohlrogge JB. Differential regulation of mRNA levels of acyl carrier protein isoforms in Arabidopsis. Plant Physiol. 128: 223-235 (2002).

Bonaventure G, Salas JJ, Pollard MR, Ohlrogge JB. Disruption of the FATB gene in Arabidopsis demonstrates an essential role of saturated fatty acids in plant growth. Plant Cell 15: 1020-1033 (2003).

Bond DM, Wilson IW, Dennis ES, Pogson BJ, Jean Finnegan E. VERNALIZATION INSENSITIVE 3 (VIN3) is required for the response of Arabidopsis thaliana seedlings exposed to low oxygen conditions. Plant J. 59: 576-587 (2009).

Bonfig KB, Schreiber U, Gabler A, Roitsch T, Berger S. Infection with virulent and avirulent P. syringae strains differentially affects photosynthesis and sink metabolism in Arabidopsis leaves. Planta 225: 1-12 (2006).

Bongcam V, MacDonald-Comber Petetot J, Mittendorf V, Robertson EJ, Leech RM, Qin YM, Hiltunen JK, Poirier Y. Importance of sequences adjacent to the terminal tripeptide in the import of a peroxisomal Candida tropicalis protein in plant peroxisomes. Planta 211: 150-157 (2000).

Bonham-Smith PC, Moloney MM. Nucleotide and protein sequences of a cytoplasmic ribosomal protein S15a gene from Arabidopsis thaliana. Plant Physiol. 106: 401-402 (1994).

Bonin CP, Freshour G, Hahn MG, Vanzin GF, Reiter WD. The GMD1 and GMD2 genes of Arabidopsis encode isoforms of GDP-D-mannose 4,6-dehydratase with cell type-specific expression patterns. Plant Physiol. 132: 883-892 (2003).

Bonner ER, Cahoon RE, Knapke SM, Jez JM. Molecular basis of cysteine biosynthesis in plants: structural and functional analysis of O-acetylserine sulfhydrylase from Arabidopsis thaliana. J. Biol. Chem. 280: 38803-38013 (2005).

Bonza MC, Luoni L, De Michelis MI. Functional expression in yeast of an N-deleted form of At-ACA8, a plasma membrane Ca(2+)-ATPase of Arabidopsis thaliana, and characterization of a hyperactive mutant. Planta 218: 814-823 (2004).

Bonza MC, Morandini P, Luoni L, Geisler M, Palmgren MG, De Michelis MI. At-ACA8 encodes a plasma membrane-localized calcium-ATPase of Arabidopsis with a calmodulin-binding domain at the N terminus. Plant Physiol. 123: 1495-1506 (2000).

Booij-James IS, Dube SK, Jansen MA, Edelman M, Mattoo AK. Ultraviolet-B radiation impacts light-mediated turnover of the photosystem II reaction center heterodimer in Arabidopsis mutants altered in phenolic metabolism. Plant Physiol. 124: 1275-1284 (2000).

Booij-James IS, Edelman M, Mattoo AK. Nitric oxide donor-mediated inhibition of phosphorylation shows that light-mediated degradation of photosystem II D1 protein and phosphorylation are not tightly linked. Planta 229: 1347-1352 (2009).

Book AJ, Smalle J, Lee KH, Yang P, Walker JM, Casper S, Holmes JH, Russo LA, Buzzinotti ZW, Jenik PD, Vierstra RD. The RPN5 subunit of the 26s proteasome is essential for gametogenesis, sporophyte development, and complex assembly in Arabidopsis. Plant Cell 21: 460-478 (2009).

Book AJ, Yang P, Scalf M, Smith LM, Vierstra RD. Tripeptidyl peptidase II. An oligomeric protease complex from Arabidopsis. Plant Physiol. 138: 1046-1057 (2005).

Booker J, Chatfield S, Leyser O. Auxin acts in xylem-associated or medullary cells to mediate apical dominance. Plant Cell 15: 495-507 (2003).

Boonman A, Prinsen E, Gilmer F, Schurr U, Peeters AJ, Voesenek LA, Pons TL. Cytokinin import rate as a signal for photosynthetic acclimation to canopy light gradients. Plant Physiol. 143: 1841-1852 (2007).

Boonman A, Prinsen E, Voesenek LA, Pons TL. Redundant roles of photoreceptors and cytokinins in regulating photosynthetic acclimation to canopy density. J. Exp. Bot. 60: 1179-1190 (2009).

Boorer KJ, Fischer WN. Specificity and stoichiometry of the Arabidopsis H+ amino acid transporter AAP5. J. Biol. Chem. 272: 13040-13046 (1997).

Boorer KJ, Frommer WB, Bush DR, Kreman M, Loo DD, Wright EM. Kinetics and specificity of a H+/amino acid transporter from Arabidopsis thaliana. J. Biol. Chem. 271: 2213-2220 (1996).

Boothe JG, Sonnichsen FD, de Beus MD, Johnson-Flanagan AM. Purification, characterization, and structural analysis of a plant low-temperature-induced protein. Plant Physiol. 113: 367-376 (1997).

Borecky J, Nogueira FT, de Oliveira KA, Maia IG, Vercesi AE, Arruda P. The plant energy-dissipating mitochondrial systems: depicting the genomic structure and the expression profiles of the gene families of uncoupling protein and alternative oxidase in monocots and dicots. J. Exp. Bot. 57: 849-864 (2006).

Borevitz JO, Liang D, Plouffe D, Chang HS, Zhu T, Weigel D, Berry CC, Winzeler E, Chory J. Large-scale identification of single-feature polymorphisms in complex genomes. Genome Res. 13: 513-523 (2003).

Borevitz JO, Maloof JN, Lutes J, Dabi T, Redfern JL, Trainer GT, Werner JD, Asami T, Berry CC, Weigel D, Chory J. Quantitative trait loci controlling light and hormone response in two accessions of Arabidopsis thaliana. Genetics 160: 683-696 (2002).

Borevitz JO, Nordborg M. The impact of genomics on the study of natural variation in Arabidopsis. Plant Physiol. 132: 718-725 (2003).

Borevitz JO, Xia Y, Blount J, Dixon RA, Lamb C. Activation tagging identifies a conserved MYB regulator of phenylpropanoid biosynthesis. Plant Cell 12: 2383-2394 (2000).

Borges F, Gomes G, Gardner R, Moreno N, McCormick S, Feijo JA, Becker JD. Comparative transcriptomics of Arabidopsis thaliana sperm cells. Plant Physiol. 148: 1168-1181 (2008).

Borghi L, Bureau M, Simon R. Arabidopsis JAGGED LATERAL ORGANS is expressed in boundaries and coordinates KNOX and PIN activity. Plant Cell 19: 1795-808 (2007).

Bork C, Schwenn JD, Hell R. Isolation and characterization of a gene for assimilatory sulfite reductase from Arabidopsis thaliana. Gene 212: 147-153 (1998).

Borner GH, Lilley KS, Stevens TJ, Dupree P. Identification of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A proteomic and genomic analysis. Plant Physiol. 132: 568-577 (2003).

Borner GH, Sherrier DJ, Stevens TJ, Arkin IT, Dupree P. Prediction of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A genomic analysis. Plant Physiol. 129: 486-499 (2002).

Borner GH, Sherrier DJ, Weimar T, Michaelson LV, Hawkins ND, Macaskill A, Napier JA, Beale MH, Lilley KS, Dupree P. Analysis of detergent-resistant membranes in Arabidopsis. Evidence for plasma membrane lipid rafts. Plant Physiol. 137: 104-116 (2005).

Borrell A, Cutanda MC, Lumbreras V, Pujal J, Goday A, Culianez-Macia FA, Pages M. Arabidopsis thaliana atrab28: a nuclear targeted protein related to germination and toxic cation tolerance. Plant Mol. Biol. 50: 249-259 (2002).

Borsani O, Valpuesta V, Botella MA. Evidence for a role of salicylic acid in the oxidative damage generated by NaCl and osmotic stress in Arabidopsis seedlings. Plant Physiol. 126: 1024-1030 (2001).

Borsics T, Webb D, Andeme-Ondzighi C, Staehelin LA, Christopher DA. The cyclic nucleotide-gated calmodulin-binding channel AtCNGC10 localizes to the plasma membrane and influences numerous growth responses and starch accumulation in Arabidopsis thaliana. Planta 225: 563-573 (2007).

Bortiri E, Chuck G, Vollbrecht E, Rocheford T, Martienssen R, Hake S. ramosa2 encodes a LATERAL ORGAN BOUNDARY domain protein that determines the fate of stem cells in branch meristems of maize. Plant Cell 18: 574-585 (2006).

Bortiri E, Jackson D, Hake S. Advances in maize genomics: the emergence of positional cloning. Curr. Opin. Plant Biol. 9: 164-171 (2006).

Bosca S, Barton CJ, Taylor NG, Ryden P, Neumetzler L, Pauly M, Roberts K, Seifert GJ. Interactions between MUR10/CesA7 dependent secondary cellulose biosynthesis and primary cell wall structure. Plant Physiol. 142: 1353-1363 (2006).

Bossi F, Cordoba E, Dupré P, Mendoza MS, Román CS, León P. The Arabidopsis ABA-INSENSITIVE (ABI) 4 factor acts as a central transcription activator of the expression of its own gene, and for the induction of ABI5 and SBE2.2 genes during sugar signaling. Plant J. 59: 359-374 (2009).

Bostick M, Lochhead SR, Honda A, Palmer S, Callis J. Related to ubiquitin 1 and 2 are redundant and essential and regulate vegetative growth, auxin signaling, and ethylene production in Arabidopsis. Plant Cell 16: 2418-2432 (2004).

Botella MA, Parker JE, Frost LN, Bittner-Eddy PD, Beynon JL, Daniels MJ, Holub EB, Jones JD. Three genes of the Arabidopsis RPP1 complex resistance locus recognize distinct Peronospora parasitica avirulence determinants. Plant Cell 10: 1847-1860 (1998).

Botella-Pavia P, Besumbes O, Phillips MA, Carretero-Paulet L, Boronat A, Rodriguez-Concepcion M. Regulation of carotenoid biosynthesis in plants: evidence for a key role of hydroxymethylbutenyl diphosphate reductase in controlling the supply of plastidial isoprenoid precursors. Plant J. 40: 188-199 (2004).

Bottcher C, Roepenack-Lahaye EV, Schmidt J, Schmotz C, Neumann S, Scheel D, Clemens S. Metabolome analysis of biosynthetic mutants reveals diversity of metabolic changes and allows identification of a large number of new compounds in Arabidopsis thaliana. Plant Physiol. 147: 2107-2120 (2008).

Bottcher C, Weiler EW. cyclo-Oxylipin-galactolipids in plants: occurrence and dynamics. Planta 226: 629-637 (2007).

Botto JF, Alonso-Blanco C, Garzaron I, Sanchez RA, Casal JJ. The Cape Verde Islands allele of cryptochrome 2 enhances cotyledon unfolding in the absence of blue light in Arabidopsis. Plant Physiol. 133: 1547-1556 (2003).

Botto JF, Smith H. Differential genetic variation in adaptive strategies to a common environmental signal in Arabidopsis accessions: phytochrome-mediated shade avoidance. Plant Cell Environ. 25: 53-63 (2002).

Botton A, Galla G, Conesa A, Bachem C, Ramina A, Barcaccia G. Large-scale gene ontology analysis of plant transcriptome-derived sequences retrieved by AFLP technology. BMC Genomics 9: 347 (2008).

Bou Daher F, Chebli Y, Geitmann A. Optimization of conditions for germination of cold-stored Arabidopsis thaliana pollen. Plant Cell Rep. 28: 347-357 (2009).

Bouche N, Bouchez D. Arabidopsis gene knockout: phenotypes wanted. Curr. Opin. Plant Biol. 4: 111-117 (2001).

Bouche N, Fait A, Bouchez D, Moller SG, Fromm H. Mitochondrial succinic-semialdehyde dehydrogenase of the gamma-aminobutyrate shunt is required to restrict levels of reactive oxygen intermediates in plants. Proc. Natl. Acad. Sci. U.S.A. 100: 6843-6848 (2003).

Bouche N, Fait A, Zik M, Fromm H. The root-specific glutamate decarboxylase (GAD1) is essential for sustaining GABA levels in Arabidopsis. Plant Mol. Biol. 55: 315-325 (2004).

Boucheron E, Healy JH, Bajon C, Sauvanet A, Rembur J, Noin M, Sekine M, Riou Khamlichi C, Murray JA, Van Onckelen H, Chriqui D. Ectopic expression of Arabidopsis CYCD2 and CYCD3 in tobacco has distinct effects on the structural organization of the shoot apical meristem. J. Exp. Bot. 56: 123-134 (2005).

Boudolf V, Barroco R, Engler Jde A, Verkest A, Beeckman T, Naudts M, Inze D, De Veylder L. B1-type cyclin-dependent kinases are essential for the formation of stomatal complexes in Arabidopsis thaliana. Plant Cell 16: 945-955 (2004).

Boudolf V, Inze D, De Veylder L. What if higher plants lack a CDC25 phosphatase? Trends Plant Sci. 11: 474-479 (2006).

Boudolf V, Vlieghe K, Beemster GT, Magyar Z, Torres Acosta JA, Maes S, Van Der Schueren E, Inze D, De Veylder L. The plant-specific cyclin-dependent kinase CDKB1;1 and transcription factor E2Fa-DPa control the balance of mitotically dividing and endoreduplicating cells in Arabidopsis. Plant Cell 16: 2683-2692 (2004).

Boudsocq M, Barbier-Brygoo H, Lauriere C. Identification of nine SNF1-related protein kinases 2 activated by hyperosmotic and saline stresses in Arabidopsis thaliana. J. Biol. Chem. 279: 41758-41766 (2004).

Boudsocq M, Droillard MJ, Barbier-Brygoo H, Lauriere C. Different phosphorylation mechanisms are involved in the activation of sucrose non-fermenting 1 related protein kinases 2 by osmotic stresses and abscisic acid. Plant Mol. Biol. 63: 491-503 (2007).

Boulay J-L, Miot S. Plant biotechnology, Biochemical engineering, Web alert. Curr. Opin. Biotechnol. 12: 121 (2001).

Bouly JP, Giovani B, Djamei A, Mueller M, Zeugner A, Dudkin EA, Batschauer A, Ahmad M. Novel ATP-binding and autophosphorylation activity associated with Arabidopsis and human cryptochrome-1. Eur. J. Biochem. 270: 2921-2928 (2003).

Bourgis F, Botha FC, Mani S, Hiten FN, Rigden DJ, Verbruggen N. Characterization and functional investigation of an Arabidopsis cDNA encoding a homologue to the d-PGMase superfamily. J. Exp. Bot. 56: 1129-1142 (2005).

Bourgis F, Roje S, Nuccio ML, Fisher DB, Tarczynski MC, Li C, Herschbach C, Rennenberg H, Pimenta MJ, Shen TL, Gage DA, Hanson AD. S-Methylmethionine plays a major role in phloem sulfur transport and is synthesized by a novel type of methyltransferase. Plant Cell 11: 1485-1498 (1999).

Boursiac Y, Boudet J, Postaire O, Luu DT, Tournaire-Roux C, Maurel C. Stimulus-induced down-regulation of root water transport involves reactive oxygen species-activated cell signalling and plasma membrane intrinsic protein internalization. Plant J. 56: 207-218 (2008).

Boursiac Y, Chen S, Luu DT, Sorieul M, van den Dries N, Maurel C. Early effects of salinity on water transport in Arabidopsis roots. Molecular and cellular features of aquaporin expression. Plant Physiol. 139: 790-805 (2005).

Bouton S, Leboeuf E, Mouille G, Leydecker MT, Talbotec J, Granier F, Lahaye M, Hofte H, Truong HN. QUASIMODO1 encodes a putative membrane-bound glycosyltransferase required for normal pectin synthesis and cell adhesion in Arabidopsis. Plant Cell 14: 2577-2590 (2002).

Bouvier F, Linka N, Isner JC, Mutterer J, Weber AP, Camara B. Arabidopsis SAMT1 defines a plastid transporter regulating plastid biogenesis and plant development. Plant Cell 18: 3088-3105 (2006).

Bouvier F, Suire C, D'Harlingue A, Backhaus RA, Camara B. Molecular cloning of geranyl diphosphate synthase and compartmentation of monoterpene synthesis in plant cells. Plant J. 24: 241-252 (2000).

Bouwmeester HJ, Matusova R, Zhongkui S, Beale MH. Secondary metabolite signalling in host-parasitic plant interactions. Curr. Opin. Plant Biol. 6: 358-364 (2003).

Bove J, Kim CY, Gibson CA, Assmann SM. Characterization of wound-responsive RNA-binding proteins and their splice variants in Arabidopsis. Plant Mol. Biol. 67: 71-88 (2008).

Bovet L, Eggmann T, Meylan-Bettex M, Polier J, Kammer P, Marin E, Feller U, Martinoia E. Transcript levels of AtMRPs after cadmium treatment: induction of AtMRP3. Plant Cell Environ. 26: 371-381 (2003).

Bovy A, Van den Berg C, De Vrieze G, Thompson WF, Weisbeek P, Smeekens S. Light-regulated expression of the Arabidopsis thaliana ferredoxin gene requires sequences upstream and downstream of the transcription initiation site. Plant Mol. Biol. 27: 27-39 (1995).

Bown AW, Zhang GJ. Mechanical stimulation, 4-aminobutyric acid (GABA) synthesis, and growth inhibition in soybean hypocotyl tissue. Can. J. Bot. 78: 119-123 (2000).

Boxall SF, Foster JM, Bohnert HJ, Cushman JC, Nimmo HG, Hartwell J. Conservation and divergence of circadian clock operation in a stress-inducible Crassulacean acid metabolism species reveals clock compensation against stress. Plant Physiol. 137: 969-982 (2005).

Boyce JM, Coates D, Fricker MD, Evans DE. Genomic sequence of a calnexin homolog from Arabidopsis thaliana. Plant Physiol. 106: 1691 (1994).

Boyce JM, Knight H, Deyholos M, Openshaw MR, Galbraith DW, Warren G, Knight MR. The sfr6 mutant of Arabidopsis is defective in transcriptional activation via CBF/DREB1 and DREB2 and shows sensitivity to osmotic stress. Plant J. 34: 395-406 (2003).

Boyes DC, Zayed AM, Ascenzi R, McCaskill AJ, Hoffman NE, Davis KR, Gorlach J. Growth stage-based phenotypic analysis of Arabidopsis: a model for high throughput functional genomics in plants. Plant Cell 13: 1499-1510 (2001).

Boyko A, Zemp F, Filkowski J, Kovalchuk I. Double-strand break repair in plants is developmentally regulated. Plant Physiol. 141: 488-497 (2006).

Bozzo GG, Basset GJ, Naponelli V, Noiriel A, Gregory JF 3rd, Hanson AD. Characterization of the folate salvage enzyme p-aminobenzoylglutamate hydrolase in plants. Phytochemistry 69: 29-37 (2008).

Bozzo GG, Dunn EL, Plaxton WC. Differential synthesis of phosphate-starvation inducible purple acid phosphatase isozymes in tomato (Lycopersicon esculentum) suspension cells and seedlings. Plant Cell Environ. 29: 303-313 (2006).

Bozzo GG, Raghothama KG, Plaxton WC. Purification and characterization of two secreted purple acid phosphatase isozymes from phosphate-starved tomato (Lycopersicon esculentum) cell cultures. Eur. J. Biochem. 269: 6278-6286 (2002).

Braam J, Sistrunk ML, Polisensky DH, Xu W, Purugganan MM, Antosiewicz DM, Campbell P, Johnson KA. Plant responses to environmental stress: regulation and functions of the Arabidopsis TCH genes. Planta 203 Suppl.: 35S-41S (1997).

Bracha-Drori K, Shichrur K, Katz A, Oliva M, Angelovici R, Yalovsky S, Ohad N. Detection of protein-protein interactions in plants using bimolecular fluorescence complementation. Plant J. 40: 419-427 (2004).

Bracha-Drori K, Shichrur K, Lubetzky TC, Yalovsky S. Functional analysis of Arabidopsis post-prenylation CaaX processing enzymes and their function in subcellular protein targeting. Plant Physiol. 148: 119-131 (2008).

Brader G, Mikkelsen MD, Halkier BA, Tapio Palva E. Altering glucosinolate profiles modulates disease resistance in plants. Plant J. 46: 758-767 (2006).

Brader G, Tas E, Palva ET. Jasmonate-dependent induction of indole glucosinolates in Arabidopsis by culture filtrates of the nonspecific pathogen Erwinia carotovora. Plant Physiol. 126: 849-860 (2001).

Brady SM, Provart NJ. Web-queryable large-scale data sets for hypothesis generation in plant biology. Plant Cell 21: 1034-1051 (2009).

Brady SM, Sarkar SF, Bonetta D, McCourt P. The ABSCISIC ACID INSENSITIVE 3 (ABI3) gene is modulated by farnesylation and is involved in auxin signaling and lateral root development in Arabidopsis. Plant J. 34: 67-75 (2003).

Brady SM, Song S, Dhugga K, Antoni-Rafalski J, Benfey PN. Combining expression and comparative evolutionary analysis. The COBRA gene family. Plant Physiol. 143: 172-187 (2007).

Branco-Price C, Kaiser KA, Jang CJ, Larive CK, Bailey-Serres J. Selective mRNA translation coordinates energetic and metabolic adjustments to cellular oxygen deprivation and reoxygenation in Arabidopsis thaliana. Plant J. 56: 743-755 (2008).

Brand L, Horler M, Nuesch E, Vassalli S, Barrell P, Yang W, Jefferson RA, Grossniklaus U, Curtis MD. A versatile and reliable two-component system for tissue-specific gene induction in Arabidopsis. Plant Physiol. 141: 1194-1204 (2006).

Brand U, Grunewald M, Hobe M, Simon R. Regulation of CLV3 expression by two homeobox genes in Arabidopsis. Plant Physiol. 129: 565-575 (2002).

Brands A, Ho THD. Function of a plant stress-induced gene, HVA22. Synthetic enhancement screen with its yeast homolog reveals its role in vesicular traffic. Plant Physiol. 130: 1121-1131 (2002).

Brandstatter I, Kieber JJ. Two genes with similarity to bacterial response regulators are rapidly and specifically induced by cytokinin in Arabidopsis. Plant Cell 10: 1009-1019 (1998).

Brandt S, Kloska S, Altmann T, Kehr J. Using array hybridization to monitor gene expression at the single cell level. J. Exp. Bot. 53: 2315-2323 (2002).

Branen JK, Chiou TJ, Engeseth NJ. Overexpression of acyl carrier protein-1 alters fatty acid composition of leaf tissue in Arabidopsis. Plant Physiol. 127: 222-229 (2001).

Branen JK, Shintani DK, Engeseth NJ. Expression of antisense acyl carrier protein-4 reduces lipid content in Arabidopsis leaf tissue. Plant Physiol. 132: 748-756 (2003).

Brault M, Amiar Z, Pennarun AM, Monestiez M, Zhang Z, Cornel D, Dellis O, Knight H, Bouteau F, Rona JP. Plasma membrane depolarization induced by abscisic acid in Arabidopsis suspension cells involves reduction of proton pumping in addition to anion channel activation, which are both Ca2+ dependent. Plant Physiol. 135: 231-243 (2004).

Braun DM, Stone JM, Walker JC. Interaction of the maize and Arabidopsis kinase interaction domains with a subset of receptor-like protein kinases: implications for transmembrane signaling in plants. Plant J. 12: 83-95 (1997).

Braun N, Wyrzykowska J, Muller P, David K, Couch D, Perrot-Rechenmann C, Fleming AJ. Conditional repression of AUXIN BINDING PROTEIN1 reveals that it coordinates cell division and cell expansion during postembryonic shoot development in Arabidopsis and tobacco. Plant Cell 20: 2746-2762 (2008).

Brautigam M, Lindlof A, Zakhrabetkova S, Gharti-Chhetri G, Olsson B, Olsson O. Generation and analysis of 9792 EST sequences from cold acclimated oat, Avena sativa. BMC Plant Biol. 5: 18 (2005).

Bray EA. Genes commonly regulated by water-deficit stress in Arabidopsis thaliana. J. Exp. Bot. 55: 2331-2341 (2004).

Bray EA. Abscisic acid regulation of gene expression during water-deficit stress in the era of the Arabidopsis genome. Plant Cell Environ. 25: 153-161 (2002).

Bray EA. Abscisic acid regulation of gene expression during water-deficit stress in the era of the Arabidopsis genome. Plant Cell Environ. 25: 153-161 (2002).

Bray EA. Classification of genes differentially expressed during water-deficit stress in Arabidopsis thaliana: an analysis using microarray and differential expression data. Ann. Bot. (Lond.) 89: 803-811 (2002).

Brazier-Hicks M, Edwards LA, Edwards R. Selection of plants for roles in phytoremediation: the importance of glucosylation. Plant Biotechnol. J. 5: 627-635 (2007).

Brazier-Hicks M, Edwards R. Functional importance of the family 1 glucosyltransferase UGT72B1 in the metabolism of xenobiotics in Arabidopsis thaliana. Plant J. 42: 556-566 (2005).

Brearley CA, Hanke DE. Metabolic relations of inositol 3,4,5,6-tetrakisphosphate revealed by cell permeabilization. Identification of inositol 3,4,5,6-tetrakisphosphate 1-kinase and inositol 3,4,5,6-tetrakisphosphate phosphatase activities in mesophyll cells. Plant Physiol. 122: 1209-1216 (2000).

Bregante M, Yang Y, Formentin E, Carpaneto A, Schroeder JI, Gambale F, Lo Schiavo F, Costa A. KDC1, a carrot Shaker-like potassium channel, reveals its role as a silent regulatory subunit when expressed in plant cells. Plant Mol. Biol. 66: 61-72 (2008).

Brehelin C, Meyer EH, De Souris JP, Bonnard G, Meyer Y. Resemblance and dissemblance of Arabidopsis type II peroxiredoxins: similar sequences for divergent gene expression, protein localization, and activity. Plant Physiol. 132: 2045-2057 (2003).

Breitinger U, Clausen T, Ehlert S, Huber R, Laber B, Schmidt F, Pohl E, Messerschmidt A. The three-dimensional structure of cystathionine beta-lyase from Arabidopsis and its substrate specificity. Plant Physiol. 126: 631-642 (2001).

Breitkreuz KE, Shelp BJ, Fischer WN, Schwacke R, Rentsch D. Identification and characterization of GABA, proline and quaternary ammonium compound transporters from Arabidopsis thaliana. FEBS Lett. 450: 280-284 (1999).

Brembu T, Winge P, Bones AM. The small GTPase AtRAC2/ROP7 is specifically expressed during late stages of xylem differentiation in Arabidopsis. J. Exp. Bot. 56: 2465-2476 (2005).

Brembu T, Winge P, Seem M, Bones AM. NAPP and PIRP encode subunits of a putative wave regulatory protein complex involved in plant cell morphogenesis. Plant Cell 16: 2335-2349 (2004).

Brendel V, Zhu W. Computational modeling of gene structure in Arabidopsis thaliana. Plant Mol. Biol. 48: 49-58 (2002).

Brenner ED, Feinberg P, Runko S, Coruzzi GM. A mutation in the proteosomal regulatory particle AAA-ATPase-3 in Arabidopsis impairs the light-specific hypocotyl elongation response elicited by a glutamate receptor agonist, BMAA. Plant Mol. Biol. 70: 523-533 (2009).

Brenner ED, Martinez-Barboza N, Clark AP, Liang QS, Stevenson DW, Coruzzi GM. Arabidopsis mutants resistant to S(+)-beta-methyl-alpha, beta-diaminopropionic acid, a cycad-derived glutamate receptor agonist. Plant Physiol. 124: 1615-1624 (2000).

Brenner WG, Romanov GA, Kollmer I, Burkle L, Schmulling T. Immediate-early and delayed cytokinin response genes of Arabidopsis thaliana identified by genome-wide expression profiling reveal novel cytokinin-sensitive processes and suggest cytokinin action through transcriptional cascades. Plant J. 44: 314-333 (2005).

Bresolin NS, Li Z, Kosar-Hashemi B, Tetlow IJ, Chatterjee M, Rahman S, Morell MK, Howitt CA. Characterisation of disproportionating enzyme from wheat endosperm. Planta 224: 20-31 (2006).

Bressan RA, Zhang C, Zhang H, Hasegawa PM, Bohnert HJ, Zhu JK. Learning from the Arabidopsis experience. The next gene search paradigm. Plant Physiol. 127: 1354-1360 (2001).

Breton G, Danyluk J, Charron JB, Sarhan F. Expression profiling and bioinformatic analyses of a novel stress-regulated multispanning transmembrane protein family from cereals and Arabidopsis. Plant Physiol. 132: 64-74 (2003).

Breuil-Broyer S, Morel P, de Almeida-Engler J, Coustham V, Negrutiu I, Trehin C. High-resolution boundary analysis during Arabidopsis thaliana flower development. Plant J. 38: 182-192 (2004).

Brewer PB, Dun EA, Ferguson BJ, Rameau C, Beveridge CA. Strigolactone acts downstream of auxin to regulate bud outgrowth in pea and Arabidopsis. Plant Physiol. 150: 482-493 (2009).

Briere C, Barthou H, Jauneau A, Alibert G, Petitprez M. The actin cytoskeleton is involved in signalling protoplast embryogenesis induced by agarose embedding. Physiol. Plant. 122: 115-122 (2004).

Briggs GC, Mouchel CF, Hardtke CS. Characterization of the plant-specific BREVIS RADIX gene family reveals limited genetic redundancy despite high sequence conservation. Plant Physiol. 140: 1306-1316 (2006).

Briggs GC, Osmont KS, Shindo C, Sibout R, Hardtke CS. Unequal genetic redundancies in Arabidopsis - a neglected phenomenon? Trends Plant Sci. 11: 492-498 (2006).

Briggs WR, Liscum E. The role of mutants in the search for the photoreceptor for phototropism in higher plants. Plant Cell Environ. 20: 768-772 (1997).

Bright J, Desikan R, Hancock JT, Weir IS, Neill SJ. ABA-induced NO generation and stomatal closure in Arabidopsis are dependent on HO synthesis. Plant J. 45: 113-122 (2006).

Brigneti G, Martin-Hernandez AM, Jin H, Chen J, Baulcombe DC, Baker B, Jones JD. Virus-induced gene silencing in Solanum species. Plant J. 39: 264-272 (2004).

Brini F, Gaxiola RA, Berkowitz GA, Masmoudi K. Cloning and characterization of a wheat vacuolar cation/proton antiporter and pyrophosphatase proton pump. Plant Physiol. Biochem. 43: 347-354 (2005).

Britt AB, Chen JJ, Wykoff D, Mitchell D. A UV-sensitive mutant of Arabidopsis defective in the repair of pyrimidine-pyrimidinone(6-4) dimers. Science 261: 1571-1574 (1993).

Britt AB, May GD. Re-engineering plant gene targeting. Trends Plant Sci. 8: 90-95 (2003).

Britto DT, Kronzucker HJ. Constancy of nitrogen turnover kinetics in the plant cell: insights into the integration of subcellular N fluxes. Planta 213: 175-181 (2001).

Brocard IM, Lynch TJ, Finkelstein RR. Regulation and role of the Arabidopsis abscisic acid-insensitive 5 gene in abscisic acid, sugar, and stress response. Plant Physiol. 129: 1533-1543 (2002).

Brocard-Gifford I, Lynch TJ, Garcia ME, Malhotra B, Finkelstein RR. The Arabidopsis thaliana abscisic acid-insensitive8 locus encodes a novel protein mediating abscisic acid and sugar responses essential for growth. Plant Cell 16: 406-421 (2004).

Brocard-Gifford IM, Lynch TJ, Finkelstein RR. Regulatory networks in seeds integrating developmental, abscisic acid, sugar, and light signaling. Plant Physiol. 131: 78-92 (2003).

Brock A, Brandt W, Drager B. The functional divergence of short-chain dehydrogenases involved in tropinone reduction. Plant J. 54: 388-401 (2008).

Brodelius M, Hiraiwa M, Marttila S, Al Karadaghi S, Picaud S, Brodelius PE. Immunolocalization of the saposin-like insert of plant aspartic proteinases exhibiting saposin C activity. Expression in young flower tissues and in barley seeds. Physiol. Plant. 125: 405-418 (2005).

Brodersen P, Malinovsky FG, Hematy K, Newman MA, Mundy J. The role of salicylic acid in the induction of cell death in Arabidopsis acd11. Plant Physiol. 138: 1037-1045 (2005).

Brodersen P, Petersen M, Bjorn Nielsen H, Zhu S, Newman MA, Shokat KM, Rietz S, Parker J, Mundy J. Arabidopsis MAP kinase 4 regulates salicylic acid- and jasmonic acid/ethylene-dependent responses via EDS1 and PAD4. Plant J. 47: 532-546 (2006).

Broun P. Transcriptional control of flavonoid biosynthesis: a complex network of conserved regulators involved in multiple aspects of differentiation in Arabidopsis. Curr. Opin. Plant Biol. 8: 272-279 (2005).

Broun P, Somerville C. Accumulation of ricinoleic, lesquerolic, and densipolic acids in seeds of transgenic Arabidopsis plants that express a fatty acyl hydroxylase cDNA from castor bean. Plant Physiol. 113: 933-942 (1997).

Brown AP, Affleck V, Fawcett T, Slabas AR. Tandem affinity purification tagging of fatty acid biosynthetic enzymes in Synechocystis sp. PCC6803 and Arabidopsis thaliana. J. Exp. Bot. 57: 1563-1571 (2006).

Brown BA, Cloix C, Jiang GH, Kaiserli E, Herzyk P, Kliebenstein DJ, Jenkins GI. A UV-B-specific signaling component orchestrates plant UV protection. Proc. Natl. Acad. Sci. U.S.A. 102: 18225-18230 (2005).

Brown DE, Rashotte AM, Murphy AS, Normanly J, Tague BW, Peer WA, Taiz L, Muday GK. Flavonoids act as negative regulators of auxin transport in vivo in Arabidopsis. Plant Physiol. 126: 524-535 (2001).

Brown DM, Goubet F, Wong VW, Goodacre R, Stephens E, Dupree P, Turner SR. Comparison of five xylan synthesis mutants reveals new insight into the mechanisms of xylan synthesis. Plant J. 52: 1154-1168 (2007).

Brown DM, Zeef LA, Ellis J, Goodacre R, Turner SR. Identification of novel genes in Arabidopsis involved in secondary cell wall formation using expression profiling and reverse genetics. Plant Cell 17: 2281-2295 (2005).

Brown DM, Zhang Z, Stephens E, Dupree P, Turner SR. Characterization of IRX10 and IRX10-like reveals an essential role in glucuronoxylan biosynthesis in Arabidopsis. Plant J. 57: 732-746 (2009).

Brown GG, Formanova N, Jin H, Wargachuk R, Dendy C, Patil P, Laforest M, Zhang J, Cheung WY, Landry BS. The radish Rfo restorer gene of Ogura cytoplasmic male sterility encodes a protein with multiple pentatricopeptide repeats. Plant J. 35: 262-272 (2003).

Brown NJ, Parsley K, Hibberd JM. The future of C4 research--maize, Flaveria or Cleome? Trends Plant Sci. 10: 215-221 (2005).

Brown NJ, Sullivan JA, Gray JC. Light and plastid signals regulate the expression of the pea plastocyanin gene through a common region at the 5' end of the coding region. Plant J. 43: 541-552 (2005).

Brown PD, Tokuhisa JG, Reichelt M, Gershenzon J. Variation of glucosinolate accumulation among different organs and developmental stages of Arabidopsis thaliana. Phytochemistry 62: 471-481 (2003).

Brown PH, Bellaloui N, Wimmer MA, Bassil ES, Ruiz J, Hu H, Pfeffer H, Dannel F, Romheld V. Boron in plant biology. Plant Biol. 4: 205-223 (2002).

Brown RL, Kazan K, McGrath KC, Maclean DJ, Manners JM. A role for the GCC-box in jasmonate-mediated activation of the PDF1.2 gene of Arabidopsis. Plant Physiol. 132: 1020-1032 (2003).

Brownfield DL, Todd CD, Deyholos MK. Analysis of Arabidopsis arginase gene transcription patterns indicates specific biological functions for recently diverged paralogs. Plant Mol. Biol. 67: 429-440 (2008).

Browse J. Jasmonate passes muster: a receptor and targets for the defense hormone. Annu. Rev. Plant Biol. 60: 183-205 (2009).

Browse J, Xin Z. Temperature sensing and cold acclimation. Curr. Opin. Plant Biol. 4: 241-246 (2001).

Bruggemann L, Dietrich P, Dreyer I, Hedrich R. Pronounced differences between the native K+ channels and KAT1 and KST1 alpha-subunit homomers of guard cells. Planta 207: 370-376 (1999).

Brugiere S, Kowalski S, Ferro M, Seigneurin-Berny D, Miras S, Salvi D, Ravanel S, D'Herin P, Garin J, Bourguignon J, Joyard J, Rolland N. The hydrophobic proteome of mitochondrial membranes from Arabidopsis cell suspensions. Phytochemistry 65: 1693-1707 (2004).

Brugmans B, Del Carmen AF, Bachem CW, Van Os H, Van Eck HJ, Visser RG. A novel method for the construction of genome wide transcriptome maps. Plant J. 31: 211-222 (2002).

Bruhl A, Haverkamp T, Gisselmann G, Schwenn JD. A cDNA clone from Arabidopsis thaliana encoding plastidic ferredoxin:sulfite reductase. Biochim. Biophys. Acta 1295: 119-124 (1996).

Brukhin V, Gheyselinck J, Gagliardini V, Genschik P, Grossniklaus U. The RPN1 subunit of the 26S proteasome in Arabidopsis is essential for embryogenesis. Plant Cell 17: 2723-2737 (2005).

Brummell DA, Balint-Kurti PJ, Harpster MH, Palys JM, Oeller PW, Gutterson N. Inverted repeat of a heterologous 3'-untranslated region for high-efficiency, high-throughput gene silencing. Plant J. 33: 793-800 (2003).

Brunaud V, Balzergue S, Dubreucq B, Aubourg S, Samson F, Chauvin S, Bechtold N, Cruaud C, DeRose R, Pelletier G, Lepiniec L, Caboche M, Lecharny A. T-DNA integration into the Arabidopsis genome depends on sequences of pre-insertion sites. EMBO Rep. 3: 1152-1157 (2002).

Bruneau L, Chapman R, Marsolais F. Co-occurrence of both L-asparaginase subtypes in Arabidopsis: At3g16150 encodes a K(+)-dependent L-asparaginase. Planta 224: 668-679 (2006).

Bruno AK, Wetzel CM. The early light-inducible protein (ELIP) gene is expressed during the chloroplast-to-chromoplast transition in ripening tomato fruit. J. Exp. Bot. 55: 2541-2548 (2004).

Brychkova G, Alikulov Z, Fluhr R, Sagi M. A critical role for ureides in dark and senescence-induced purine remobilization is unmasked in the Atxdh1 Arabidopsis mutant. Plant J. 54: 496-509 (2008).

Brychkova G, Xia Z, Yang G, Yesbergenova Z, Zhang Z, Davydov O, Fluhr R, Sagi M. Sulfite oxidase protects plants against sulfur dioxide toxicity. Plant J. 50: 696-709 (2007).

Bu Q, Li H, Zhao Q, Jiang H, Zhai Q, Zhang J, Wu X, Sun J, Xie Q, Wang D, Li C. The Arabidopsis RING finger E3 ligase RHA2a is a novel positive regulator of abscisic acid signaling during seed germination and early seedling development. Plant Physiol. 150: 463-481 (2009).

Bubier J, Schlappi M. Cold induction of EARLI1, a putative Arabidopsis lipid transfer protein, is light and calcium dependent. Plant Cell Environ. 27: 929-936 (2004).

Buchanan-Wollaston V, Earl S, Harrison E, Mathas E, Navabpour S, Page T, Pink D. The molecular analysis of leaf senescence - a genomics approach. Plant Biotechnol. J. 1: 3-22 (2003).

Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 42: 567-585 (2005).

Buche C, Poppe C, Schafer E, Kretsch T. eid1. A new Arabidopsis mutant hypersensitive in phytochrome a-dependent high-irradiance responses. Plant Cell 12: 547-558 (2000).

Buckler ES, Holland JB, Bradbury PJ, Acharya CB, Brown PJ, Browne C, Ersoz E, Flint-Garcia S, Garcia A, Glaubitz JC, Goodman MM, Harjes C, Guill K, Kroon DE, Larsson S, Lepak NK, Li H, Mitchell SE, Pressoir G, Peiffer JA, Rosas MO, Rocheford TR, et al. The genetic architecture of maize flowering time. Science 325: 714-718 (2009).

Budhiraja R, Hermkes R, Muller S, Schmidt J, Colby T, Panigrahi K, Coupland G, Bachmair A. Substrates related to chromatin and to RNA-dependent processes are modified by Arabidopsis SUMO isoforms that differ in a conserved residue with influence on desumoylation. Plant Physiol. 149: 1529-1540 (2009).

Buer CS, Djordjevic MA. Architectural phenotypes in the transparent testa mutants of Arabidopsis thaliana. J. Exp. Bot. 60: 751-763 (2009).

Buer CS, Muday GK. The transparent testa4 mutation prevents flavonoid synthesis and alters auxin transport and the response of Arabidopsis roots to gravity and light. Plant Cell 16: 1191-1205 (2004).

Buer CS, Muday GK, Djordjevic MA. Flavonoids are differentially taken up and transported long distances in Arabidopsis. Plant Physiol. 145: 478-490 (2007).

Buer CS, Sukumar P, Muday GK. Ethylene modulates flavonoid accumulation and gravitropic responses in roots of Arabidopsis. Plant Physiol. 140: 1384-1396 (2006).

Buer CS, Wasteneys GO, Masle J. Ethylene modulates root-wave responses in Arabidopsis. Plant Physiol. 132: 1085-1096 (2003).

Buer CS, Weathers PJ, Swartzlander GA Jr. Changes in hechtian strands in cold-hardened cells measured by optical microsurgery. Plant Physiol. 122: 1365-1378 (2000).

Bueso E, Alejandro S, Carbonell P, Perez-Amador MA, Fayos J, Belles JM, Rodriguez PL, Serrano R. The lithium tolerance of the Arabidopsis cat2 mutant reveals a cross-talk between oxidative stress and ethylene. Plant J. 52: 1052-1065 (2007).

Bughio N, Yamaguchi H, Nishizawa NK, Nakanishi H, Mori S. Cloning an iron-regulated metal transporter from rice. J. Exp. Bot. 53: 1677-1682 (2002).

Bukhov NG, Heber U, Wiese C, Shuvalov VA. Energy dissipation in photosynthesis: does the quenching of chlorophyll fluorescence originate from antenna complexes of photosystem II or from the reaction center? Planta 212: 749-758 (2001).

Bulley SM, Rassam M, Hoser D, Otto W, Schünemann N, Wright M, MacRae E, Gleave A, Laing W. Gene expression studies in kiwifruit and gene over-expression in Arabidopsis indicates that GDP-L-galactose guanyltransferase is a major control point of vitamin C biosynthesis. J. Exp. Bot. 60: 765-778 (2009).

Bundock P, Hooykaas P. Severe developmental defects, hypersensitivity to DNA-damaging agents, and lengthened telomeres in Arabidopsis MRE11 mutants. Plant Cell 14: 2451-2462 (2002).

Burbulis IE, Winkel-Shirley B. Interactions among enzymes of the Arabidopsis flavonoid biosynthetic pathway. Proc. Natl. Acad. Sci. U.S.A. 96: 12929-12934 (1999).

Burch-Smith TM, Schiff M, Liu Y, Dinesh-Kumar SP. Efficient virus induced gene silencing in Arabidopsis thaliana. Plant Physiol. 142: 21-27 (2006).

Burdon RH, O'Kane D, Fadzillah N, Gill V, Boyd PA, Finch RR. Oxidative stress and responses in Arabidopsis thaliana and Oryza sativa subjected to chilling and salinity stress. Biochem. Soc. Trans. 24: 469-472 (1996).

Burgal J, Shockey J, Lu C, Dyer J, Larson T, Graham I, Browse J. Metabolic engineering of hydroxy fatty acid production in plants: RcDGAT2 drives dramatic increases in ricinoleate levels in seed oil. Plant Biotechnol. J. 6: 819-831 (2008).

Burger C, Rondet S, Benveniste P, Schaller H. Virus-induced silencing of sterol biosynthetic genes: identification of a Nicotiana tabacum L. obtusifoliol-14{alpha}-demethylase (CYP51) by genetic manipulation of the sterol biosynthetic pathway in Nicotiana benthamiana L. J. Exp. Bot. 54: 1675-1683 (2003).

Burget EG, Reiter WD. The mur4 mutant of Arabidopsis is partially defective in the de novo synthesis of uridine diphospho L-arabinose. Plant Physiol. 121: 383-390 (1999).

Burget EG, Verma R, Molhoj M, Reiter WD. The biosynthesis of L-arabinose in plants: molecular cloning and characterization of a golgi-localized UDP-D-xylose 4-epimerase encoded by the MUR4 gene of Arabidopsis. Plant Cell 15: 523-531 (2003).

Burk DH, Ye ZH. Alteration of oriented deposition of cellulose microfibrils by mutation of a katanin-like microtubule-severing protein. Plant Cell 14: 2145-2160 (2002).

Burke JJ, O'Mahony PJ, Oliver MJ. Isolation of Arabidopsis mutants lacking components of acquired thermotolerance. Plant Physiol. 123: 575-588 (2000).

Burkhead JL, Abdel-Ghany SE, Morrill JM, Pilon-Smits EA, Pilon M. The Arabidopsis thaliana CUTA gene encodes an evolutionarily conserved copper binding chloroplast protein. Plant J. 34: 856-867 (2003).

Burkle L, Cedzich A, Dopke C, Stransky H, Okumoto S, Gillissen B, Kuhn C, Frommer WB. Transport of cytokinins mediated by purine transporters of the PUP family expressed in phloem, hydathodes, and pollen of Arabidopsis. Plant J. 34: 13-26 (2003).

Burleigh SH, Harrison MJ. The down-regulation of Mt4-like genes by phosphate fertilization occurs systemically and involves phosphate translocation to the shoots. Plant Physiol. 119: 241-248 (1999).

Burleigh SH, Kristensen BK, Bechmann IE. A plasma membrane zinc transporter from Medicago truncatula is up-regulated in roots by Zn fertilization, yet down-regulated by arbuscular mycorrhizal colonization. Plant Mol. Biol. 52: 1077-1088 (2003).

Burn JE, Hocart CH, Birch RJ, Cork AC, Williamson RE. Functional analysis of the cellulose synthase genes CesA1, CesA2, and CesA3 in Arabidopsis. Plant Physiol. 129: 797-807 (2002).

Burn JE, Hurley UA, Birch RJ, Arioli T, Cork A, Williamson RE. The cellulose-deficient Arabidopsis mutant rsw3 is defective in a gene encoding a putative glucosidase II, an enzyme processing N-glycans during ER quality control. Plant J. 32: 949-960 (2002).

Burnette RN, Gunesekera BM, Gillaspy GE. An Arabidopsis inositol 5-phosphatase gain-of-function alters abscisic acid signaling. Plant Physiol. 132: 1011-1019 (2003).

Burow M, Bergner A, Gershenzon J, Wittstock U. Glucosinolate hydrolysis in Lepidium sativum--identification of the thiocyanate-forming protein. Plant Mol. Biol. 63: 49-61 (2007).

Burow M, Losansky A, Muller R, Plock A, Kliebenstein DJ, Wittstock U. The genetic basis of constitutive and herbivore-induced ESP-independent nitrile formation in Arabidopsis thaliana. Plant Physiol. 149: 561-574 (2009).

Burow M, Rice M, Hause B, Gershenzon J, Wittstock U. Cell- and tissue-specific localization and regulation of the epithiospecifier protein in Arabidopsis thaliana. Plant Mol. Biol. 64: 173-185 (2007).

Burow M, Zhang ZY, Ober JA, Lambrix VM, Wittstock U, Gershenzon J, Kliebenstein DJ. ESP and ESM1 mediate indol-3-acetonitrile production from indol-3-ylmethyl glucosinolate in Arabidopsis. Phytochemistry 69: 663-671 (2008).

Burssens S, de Almeida Engler J, Beeckman T, Richard C, Shaul O, Ferreira P, Van Montagu M, Inze D. Developmental expression of the Arabidopsis thaliana CycA2;1 gene. Planta 211: 623-631 (2000).

Burssens S, Himanen K, van de Cotte B, Beeckman T, Van Montagu M, Inze D, Verbruggen N. Expression of cell cycle regulatory genes and morphological alterations in response to salt stress in Arabidopsis thaliana. Planta 211: 632-640 (2000).

Burstenbinder K, Rzewuski G, Wirtz M, Hell R, Sauter M. The role of methionine recycling for ethylene synthesis in Arabidopsis. Plant J. 49: 238-249 (2007).

Burton RA, Shirley NJ, King BJ, Harvey AJ, Fincher GB. The CesA gene family of barley. Quantitative analysis of transcripts reveals two groups of co-expressed genes. Plant Physiol. 134: 224-236 (2004).

Busch K, Piehler J, Fromm H. Plant succinic semialdehyde dehydrogenase: dissection of nucleotide binding by surface plasmon resonance and fluorescence spectroscopy. Biochemistry 39: 10110-10117 (2000).

Busch KB, Fromm H. Plant succinic semialdehyde dehydrogenase. Cloning, purification, localization in mitochondria, and regulation by adenine nucleotides. Plant Physiol. 121: 589-598 (1999).

Busch W, Lohmann JU. Profiling a plant: expression analysis in Arabidopsis. Curr. Opin. Plant Biol. 10: 136-141 (2007).

Busch W, Wunderlich M, Schoffl F. Identification of novel heat shock factor-dependent genes and biochemical pathways in Arabidopsis thaliana. Plant J. 41: 1-14 (2005).

Buseman CM, Tamura P, Sparks AA, Baughman EJ, Maatta S, Zhao J, Roth MR, Esch SW, Shah J, Williams TD, Welti R. Wounding stimulates the accumulation of glycerolipids containing oxophytodienoic acid and dinor-oxophytodienoic acid in Arabidopsis leaves. Plant Physiol. 142: 28-39 (2006).

Bush MS, Hutchins AP, Jones AM, Naldrett MJ, Jarmolowski A, Lloyd CW, Doonan JH. Selective recruitment of proteins to 5' cap complexes during the growth cycle in Arabidopsis. Plant J. 59: 400-412 (2009).

Bush SM, Krysan PJ. Mutational evidence that the Arabidopsis MAP kinase MPK6 is involved in anther, inflorescence, and embryo development. J. Exp. Bot. 58: 2181-2191 (2007).

Bushell C, Spielman M, Scott RJ. The basis of natural and artificial postzygotic hybridization barriers in Arabidopsis species. Plant Cell 15: 1430-1442 (2003).

Busi MV, Maliandi MV, Valdez H, Clemente M, Zabaleta EJ, Araya A, Gomez-Casati DF. Deficiency of Arabidopsis thaliana frataxin alters activity of mitochondrial Fe-S proteins and induces oxidative stress. Plant J. 48: 873-882 (2006).

Busi MV, Zabaleta EJ, Araya A, Gomez-Casati DF. Functional and molecular characterization of the frataxin homolog from Arabidopsis thaliana. FEBS Lett. 576: 141-144 (2004).

Busk PK, Pujal J, Jessop A, Lumbreras V, Pages M. Constitutive protein-DNA interactions on the abscisic acid-responsive element before and after developmental activation of the rab28 gene. Plant Mol. Biol. 41: 529-536 (1999).

Busov V, Meilan R, Pearce DW, Rood SB, Ma C, Tschaplinski TJ, Strauss SH. Transgenic modification of gai or rgl1 causes dwarfing and alters gibberellins, root growth, and metabolite profiles in Populus. Planta 224: 288-299 (2006).

Busov VB, Johannes E, Whetten RW, Sederoff RR, Spiker SL, Lanz-Garcia C, Goldfarb B. An auxin-inducible gene from loblolly pine (Pinus taeda L.) is differentially expressed in mature and juvenile-phase shoots and encodes a putative transmembrane protein. Planta 218: 916-927 (2004).

Busov VB, Meilan R, Pearce DW, Ma C, Rood SB, Strauss SH. Activation tagging of a dominant gibberellin catabolism gene (GA 2-oxidase) from poplar that regulates tree stature. Plant Physiol. 132: 1283-1291 (2003).

Busquets A, Keim V, Closa M, Del Arco A, Boronat A, Arro M, Ferrer A. Arabidopsis thaliana contains a single gene encoding squalene synthase. Plant Mol. Biol. 67: 25-36 (2008).

Butaye KM, Goderis IJ, Wouters PF, Pues JM, Delaure SL, Broekaert WF, Depicker A, Cammue BP, De Bolle MF. Stable high-level transgene expression in Arabidopsis thaliana using gene silencing mutants and matrix attachment regions. Plant J. 39: 440-449 (2004).

Butenko MA, Patterson SE, Grini PE, Stenvik GE, Amundsen SS, Mandal A, Aalen RB. Inflorescence deficient in abscission controls floral organ abscission in Arabidopsis and identifies a novel family of putative ligands in plants. Plant Cell 15: 2296-2307 (2003).

Butenko MA, Stenvik GE, Alm V, Saether B, Patterson SE, Aalen RB. Ethylene-dependent and -independent pathways controlling floral abscission are revealed to converge using promoter::reporter gene constructs in the ida abscission mutant. J. Exp. Bot. 57: 3627-3637 (2006).

Butenko MA, Vie AK, Brembu T, Aalen RB, Bones AM. Plant peptides in signalling: looking for new partners. Trends Plant Sci. 14: 255-263 (2009).

Buttner M. The monosaccharide transporter(-like) gene family in Arabidopsis. FEBS Lett. 581: 2318-2324 (2007).

Buttner M, Truernit E, Baier K, Scholz-Starke J, Sontheim M, Lauterbach C, Huss VAR, Sauer N. AtSTP3, a green leaf-specific, low affinity monosaccharide-H+ symporter of Arabidopsis thaliana. Plant Cell Environ. 23: 175-184 (2000).

Buzgo M, Soltis DE, Soltis PS, Ma H. Towards a comprehensive integration of morphological and genetic studies of floral development. Trends Plant Sci. 9: 164-173 (2004).

Bykova NV, Egsgaard H, Moller IM. Identification of 14 new phosphoproteins involved in important plant mitochondrial processes. FEBS Lett. 540: 141-146 (2003).

Byrne KM, Smith SK, Ondeyka JG. Biosynthesis of nodulisporic acid A: Precursor studies. J. Am. Chem. Soc. 124: 7055-7060 (2002).

Byun YJ, Kim HJ, Lee DH. LongSAGE analysis of the early response to cold stress in Arabidopsis leaf. Planta 229: 1181-1200 (2009).

Byzova M, Verduyn C, De Brouwer D, De Block M. Transforming petals into sepaloid organs in Arabidopsis and oilseed rape: implementation of the hairpin RNA-mediated gene silencing technology in an organ-specific manner. Planta 218: 379-387 (2004).

Cabello JV, Dezar CA, Manavella PA, Chan RL. The intron of the Arabidopsis thaliana COX5c gene is able to improve the drought tolerance conferred by the sunflower Hahb-4 transcription factor. Planta 226: 1143-1154 (2007).

Cacas JL, Vailleau F, Devoine C, Ennar N, Agnel JP, Tronchet M, Ponchet M, Blein JP, Roby D, Triantaphylides C, Montillet JL. The combined action of 9 lipoxygenase and galactolipase is sufficient to bring about programmed cell death during tobacco hypersensitive response. Plant Cell Environ. 28: 1367-1378 (2005).

Cadman CS, Toorop PE, Hilhorst HW, Finch-Savage WE. Gene expression profiles of Arabidopsis Cvi seeds during dormancy cycling indicate a common underlying dormancy control mechanism. Plant J. 46: 805-822 (2006).

Cagnac O, Bourbouloux A, Chakrabarty D, Zhang MY, Delrot S. AtOPT6 transports glutathione derivatives and is induced by primisulfuron. Plant Physiol. 135: 1378-1387 (2004).

Cahoon EB, Dietrich CR, Meyer K, Damude HG, Dyer JM, Kinney AJ. Conjugated fatty acids accumulate to high levels in phospholipids of metabolically engineered soybean and Arabidopsis seeds. Phytochemistry 67: 1166-1176 (2006).

Cai S, Lashbrook CC. Laser capture microdissection of plant cells from tape-transferred paraffin sections promotes recovery of structurally intact RNA for global gene profiling. Plant J. 48: 628-637 (2006).

Cai X, Davis EJ, Ballif J, Liang M, Bushman E, Haroldsen V, Torabinejad J, Wu Y. Mutant identification and characterization of the laccase gene family in Arabidopsis. J. Exp. Bot. 57: 2563-2569 (2006).

Cai XZ, Xu QF, Wang CC, Zheng Z. Development of a virus-induced gene-silencing system for functional analysis of the RPS2-dependent resistance signalling pathways in Arabidopsis. Plant Mol. Biol. 62: 223-232 (2006).

Cain CC, Saslowsky DE, Walker RA, Shirley BW. Expression of chalcone synthase and chalcone isomerase proteins in Arabidopsis seedlings. Plant Mol. Biol. 35: 377-381 (1997).

Cain P, Hall M, Schröder WP, Kieselbach T, Robinson C. A novel extended family of stromal thioredoxins. Plant Mol. Biol. 70: 273-281 (2009).

Cairns NG, Pasternak M, Wachter A, Cobbett CS, Meyer AJ. Maturation of Arabidopsis seeds is dependent on glutathione biosynthesis within the embryo. Plant Physiol. 141: 446-455 (2006).

Calderon-Villalobos LI, Kuhnle C, Dohmann EM, Li H, Bevan M, Schwechheimer C. The evolutionarily conserved TOUGH protein is required for proper development of Arabidopsis thaliana. Plant Cell 17: 2473-2485 (2005).

Calenge F, Saliba-Colombani V, Mahieu S, Loudet O, Daniel-Vedele F, Krapp A. Natural variation for carbohydrate content in Arabidopsis thaliana. Interaction with complex traits dissected by quantitative genetics. Plant Physiol. 141: 1630-1643 (2006).

Callard D, Axelos M, Mazzolini L. Novel molecular markers for late phases of the growth cycle of Arabidopsis thaliana cell-suspension cultures are expressed during organ senescence. Plant Physiol. 112: 705-715 (1996).

Callard D, Mazzolini L. Identification of proliferation-induced genes in Arabidopsis thaliana. Characterization of a new member of the highly evolutionarily conserved histone H2A.F/Z variant subfamily. Plant Physiol. 115: 1385-1395 (1997).

Calo L, Garcia I, Gotor C, Romero LC. Leaf hairs influence phytopathogenic fungus infection and confer an increased resistance when expressing a Trichoderma {alpha}-1,3-glucanase. J. Exp. Bot. 57: 3911-3920 (2006).

Calvo ES, Rodermel SR, Shoemaker RC. A third highly conserved group 1 Lea gene from Arabidopsis thaliana L. Plant Physiol. 106: 787-788 (1994).

Camacho-Cristobal JJ, Rexach J, Conejero G, Al-Ghazi Y, Nacry P, Doumas P. PRD, an Arabidopsis AINTEGUMENTA-like gene, is involved in root architectural changes in response to phosphate starvation. Planta 228: 511-522 (2008).

Camas A, Cardenas L, Quinto C, Lara M. Expression of different calmodulin genes in bean (Phaseolus vulgaris L.): Role of nod factor on calmodulin gene regulation. Mol. Plant Microbe Interact. 15: 428-436 (2002).

Campanella JJ, Ludwig-Mueller J, Town CD. Isolation and characterization of mutants of Arabidopsis thaliana with increased resistance to growth inhibition by indoleacetic acid-amino acid conjugates. Plant Physiol. 112: 735-745 (1996).

Campanella JJ, Olajide AF, Magnus V, Ludwig-Muller J. A novel auxin conjugate hydrolase from wheat with substrate specificity for longer side-chain auxin amide conjugates. Plant Physiol. 135: 2230-2240 (2004).

Campanoni P, Sutter JU, Davis CS, Littlejohn GR, Blatt MR. A generalized method for transfecting root epidermis uncovers endosomal dynamics in Arabidopsis root hairs. Plant J. 51: 322-330 (2007).

Campbell EJ, Schenk PM, Kazan K, Penninckx IA, Anderson JP, Maclean DJ, Cammue BP, Ebert PR, Manners JM. Pathogen-responsive expression of a putative ATP-binding cassette transporter gene conferring resistance to the diterpenoid sclareol is regulated by multiple defense signaling pathways in Arabidopsis. Plant Physiol. 133: 1272-1284 (2003).

Campbell M, Hahn FM, Poulter CD, Leustek T. Analysis of the isopentenyl diphosphate isomerase gene family from Arabidopsis thaliana. Plant Mol. Biol. 36: 323-328 (1998).

Campilho A, Garcia B, Toorn HV, Wijk HV, Campilho A, Scheres B. Time-lapse analysis of stem-cell divisions in the Arabidopsis thaliana root meristem. Plant J. 48: 619-627 (2006).

Campos N, Boronat A. Targeting and topology in the membrane of plant 3-hydroxy-3-methylglutaryl coenzyme A reductase. Plant Cell 7: 2163-2174 (1995).

Canamero RC, Bakrim N, Bouly JP, Garay A, Dudkin EE, Habricot Y, Ahmad M. Cryptochrome photoreceptors cry1 and cry2 antagonistically regulate primary root elongation in Arabidopsis thaliana. Planta 224: 995-1003 (2006).

Cancel JD, Larsen PB. Loss-of-function mutations in the ethylene receptor ETR1 cause enhanced sensitivity and exaggerated response to ethylene in Arabidopsis. Plant Physiol. 129: 1557-1567 (2002).

Cannons AC, Iida N, Solomonson LP. Expression of a cDNA clone encoding the haem-binding domain of Chlorella nitrate reductase. Biochem. J. 278: 203-209 (1991).

Cano-Delgado A, Penfield S, Smith C, Catley M, Bevan M. Reduced cellulose synthesis invokes lignification and defense responses in Arabidopsis thaliana. Plant J. 34: 351-362 (2003).

Canton FR, Quail PH. Both phya and phyB mediate light-imposed repression of PHYA gene expression in Arabidopsis. Plant Physiol. 121: 1207-1216 (1999).

Cao A, Jain A, Baldwin JC, Raghothama KG. Phosphate differentially regulates 14-3-3 family members and GRF9 plays a role in Pi-starvation induced responses. Planta 226: 1219-1230 (2007).

Cao D, Cheng H, Wu W, Meng Soo H, Peng J. Gibberellin mobilizes distinct DELLA-dependent transcriptomes to regulate seed germination and floral development in Arabidopsis. Plant Physiol. 142: 509-525 (2006).

Cao D, Froehlich JE, Zhang H, Cheng CL. The chlorate-resistant and photomorphogenesis-defective mutant cr88 encodes a chloroplast-targeted HSP90. Plant J. 33: 107-118 (2003).

Cao D, Hussain A, Cheng H, Peng J. Loss of function of four DELLA genes leads to light- and gibberellin-independent seed germination in Arabidopsis. Planta 223: 105-113 (2005).

Cao P, Song J, Zhou C, Weng M, Liu J, Wang F, Zhao F, Feng D, Wang B. Characterization of multiple cold induced genes from Ammopiptanthus mongolicus and functional analyses of gene AmEBP1. Plant Mol. Biol. 69: 529-539 (2009).

Cao S, Ye M, Jiang S. Involvement of GIGANTEA gene in the regulation of the cold stress response in Arabidopsis. Plant Cell Rep. 24: 683-690 (2005).

Cao SQ, Xu QT, Cao YJ, Qian K, An K, Zhu Y, Hu BZ, Zhao HF, Kuai BK. Loss-of-function mutations in DET2 gene lead to an enhanced resistance to oxidative stress in Arabidopsis. Physiol. Plant. 123: 57-66 (2005).

Cao X, Li K, Suh SG, Guo T, Becraft PW. Molecular analysis of the CRINKLY4 gene family in Arabidopsis thaliana. Planta 220: 645-657 (2005).

Cao Y, Crawford NM, Schroeder JI. Amino terminus and the first four membrane-spanning segments of the Arabidopsis K+ channel KAT1 confer inward-rectification property of plant-animal chimeric channels. J. Biol. Chem. 270: 17697-17701 (1995).

Cao Y, Dai Y, Cui S, Ma L. Histone H2B monoubiquitination in the chromatin of FLOWERING LOCUS C regulates flowering time in Arabidopsis. Plant Cell 20: 2586-2602 (2008).

Cao Y, Ward JM, Kelly WB, Ichida AM, Gaber RF, Anderson JA, Uozumi N, Schroeder JI, Crawford NM. Multiple genes, tissue specificity, and expression-dependent modulationcontribute to the functional diversity of potassium channels in Arabidopsis thaliana. Plant Physiol. 109: 1093-1106 (1995).

Cao YJ, Wei Q, Liao Y, Song HL, Li X, Xiang CB, Kuai BK. Ectopic overexpression of AtHDG11 in tall fescue resulted in enhanced tolerance to drought and salt stress. Plant Cell Rep. 28: 579-588 (2009).

Caparros-Martin JA, Reiland S, Kochert K, Cutanda MC, Culianez-Macia FA. Arabidopsis thaliana AtGpp1 and AtGpp2: two novel low molecular weight phosphatases involved in plant glycerol metabolism. Plant Mol. Biol. 63: 505-517 (2007).

Capel J, Jarillo JA, Salinas J, Martinez-Zapater JM. Two homologous low-temperature-inducible genes from Arabidopsis encode highly hydrophobic proteins. Plant Physiol. 115: 569-576 (1997).

Capella AN, Menossi M, Arruda P, Benedetti CE. COI1 affects myrosinase activity and controls the expression of two flower-specific myrosinase-binding protein homologues in Arabidopsis. Planta 213: 691-699 (2001).

Capodicasa C, Vairo D, Zabotina O, McCartney L, Caprari C, Mattei B, Manfredini C, Aracri B, Benen J, Knox JP, De Lorenzo G, Cervone F. Targeted modification of homogalacturonan by transgenic expression of a fungal polygalacturonase alters plant growth. Plant Physiol. 135: 1294-1304 (2004).

Capron A, Gourgues M, Neiva LS, Faure JE, Berger F, Pagnussat G, Krishnan A, Alvarez-Mejia C, Vielle-Calzada JP, Lee YR, Liu B, Sundaresan V. Maternal control of male-gamete delivery in Arabidopsis involves a putative GPI-anchored protein encoded by the LORELEI gene. Plant Cell 20: 3038-3049 (2008).

Capron A, Okresz L, Genschik P. First glance at the plant APC/C, a highly conserved ubiquitin-protein ligase. Trends Plant Sci. 8: 83-89 (2003).

Capron A, Serralbo O, Fulop K, Frugier F, Parmentier Y, Dong A, Lecureuil A, Guerche P, Kondorosi E, Scheres B, Genschik P. The Arabidopsis anaphase-promoting complex or cyclosome: molecular and genetic characterization of the APC2 subunit. Plant Cell 15: 2370-2382 (2003).

Carey CC, Strahle JT, Selinger DA, Chandler VL. Mutations in the pale aleurone color1 regulatory gene of the Zea mays anthocyanin pathway have distinct phenotypes relative to the functionally similar TRANSPARENT TESTA GLABRA1 gene in Arabidopsis thaliana. Plant Cell 16: 450-464 (2004).

Carey RE, Cosgrove DJ. Portrait of the expansin superfamily in Physcomitrella patens: comparisons with angiosperm expansins. Ann. Bot. (Lond.) 99: 1131-1141 (2007).

Carimi F, Zottini M, Costa A, Cattelan I, De Michele R, Terzi M, Lo Schiavo F. NO signalling in cytokinin-induced programmed cell death. Plant Cell Environ. 28: 1171-1178 (2005).

Carimi F, Zottini M, Formentin E, Terzi M, Lo Schiavo F. Cytokinins: new apoptotic inducers in plants. Planta 216: 413-421 (2003).

Carland FM, Berg BL, FitzGerald JN, Jinamornphongs S, Nelson T, Keith B. Genetic regulation of vascular tissue patterning in Arabidopsis. Plant Cell 11: 2123-2138 (1999).

Carland FM, Fujioka S, Takatsuto S, Yoshida S, Nelson T. The identification of CVP1 reveals a role for sterols in vascular patterning. Plant Cell 14: 2045-2058 (2002).

Carland FM, Nelson T. COTYLEDON VASCULAR PATTERN2-mediated inositol (1,4,5) triphosphate signal transduction Is essential for closed venation patterns of Arabidopsis foliar organs. Plant Cell 16: 1263-1275 (2004).

Carles C, Bies-Etheve N, Aspart L, Leon-Kloosterziel KM, Koornneef M, Echeverria M, Delseny M. Regulation of Arabidopsis thaliana Em genes: role of ABI5. Plant J. 30: 373-383 (2002).

Carlsbecker A, Tandre K, Johanson U, Englund M, Engstrom P. The MADS-box gene DAL1 is a potential mediator of the juvenile-to-adult transition in Norway spruce (Picea abies). Plant J. 40: 546-557 (2004).

Carlson JE, Leebens-Mack JH, Wall PK, Zahn LM, Mueller LA, Landherr LL, Hu Y, Ilut DC, Arrington JM, Choirean S, Becker A, Field D, Tanksley SD, Ma H, Depamphilis CW. EST database for early flower development in California poppy (Eschscholzia californica Cham., Papaveraceae) tags over 6000 genes from a basal eudicot. Plant Mol. Biol. 62: 351-369 (2006).

Carmel-Goren L, Liu YS, Lifschitz E, Zamir D. The SELF-PRUNING gene family in tomato. Plant Mol. Biol. 52: 1215-1222 (2003).

Carol P, Peng J, Harberd NP. Isolation and preliminary characterization of gas1-1, a mutation causing partial suppression of the phenotype conferred by the gibberellin-insensitive (gai) mutation in Arabidopsis thaliana (L.) Heyhn. Planta 197: 414-417 (1995).

Carol P, Stevenson D, Bisanz C, Breitenbach J, Sandmann G, Mache R, Coupland G, Kuntz M. Mutations in the Arabidopsis gene IMMUTANS cause a variegated phenotype by inactivating a chloroplast terminal oxidase associated with phytoene desaturation. Plant Cell 11: 57-68 (1999).

Carpaneto A, Ivashikina N, Levchenko V, Krol E, Jeworutzki E, Zhu JK, Hedrich R. Cold transiently activates calcium-permeable channels in Arabidopsis mesophyll cells. Plant Physiol. 143: 487-494 (2007).

Carpenter CD, Kreps JA, Simon AE. Genes encoding glycine-rich Arabidopsis thaliana proteins with RNA-binding motifs are influenced by cold treatment and an endogenous circadian rhythm. Plant Physiol. 104: 1015-1025 (1994).

Carr SM, Irish VF. Floral homeotic gene expression defines developmental arrest stages in Brassica oleracea L. vars. botrytis and italica. Planta 201: 179-188 (1997).

Carrari F, Coll-Garcia D, Schauer N, Lytovchenko A, Palacios-Rojas N, Balbo I, Rosso M, Fernie AR. Deficiency of a plastidial adenylate kinase in Arabidopsis results in elevated photosynthetic amino acid biosynthesis and enhanced growth. Plant Physiol. 137: 70-82 (2005).

Carraro N, Forestan C, Canova S, Traas J, Varotto S. ZmPIN1a and ZmPIN1b encode two novel putative candidates for polar auxin transport and plant architecture determination of maize. Plant Physiol. 142: 254-264 (2006).

Carre IA, Kay SA. Multiple DNA-protein complexes at a circadian-regulated promoter element. Plant Cell 7: 2039-2051 (1995).

Carre IA, Kim JY. MYB transcription factors in the Arabidopsis circadian clock. J. Exp. Bot. 53: 1551-1557 (2002).

Carrera E, Holman T, Medhurst A, Dietrich D, Footitt S, Theodoulou FL, Holdsworth MJ. Seed after-ripening is a discrete developmental pathway associated with specific gene networks in Arabidopsis. Plant J. 53: 214-224 (2008).

Carrera E, Holman T, Medhurst A, Peer W, Schmuths H, Footitt S, Theodoulou FL, Holdsworth MJ. Gene expression profiling reveals defined functions of the ABC transporter COMATOSE late in phase II of germination. Plant Physiol. 143: 1669-1679 (2007).

Carretero-Paulet L, Ahumada I, Cunillera N, Rodriguez-Concepcion M, Ferrer A, Boronat A, Campos N. Expression and molecular analysis of the Arabidopsis DXR gene encoding 1-deoxy-D-xylulose 5-phosphate reductoisomerase, the first committed enzyme of the 2-C-methyl-D-erythritol 4-phosphate pathway. Plant Physiol. 129: 1581-1591 (2002).

Carretero-Paulet L, Cairo A, Botella-Pavia P, Besumbes O, Campos N, Boronat A, Rodriguez-Concepcion M. Enhanced flux through the methylerythritol 4-phosphate pathway in Arabidopsis plants overexpressing deoxyxylulose 5-phosphate reductoisomerase. Plant Mol. Biol. 62: 683-695 (2006).

Carrie C, Kuhn K, Murcha MW, Duncan O, Small ID, O'Toole N, Whelan J. Approaches to defining dual-targeted proteins in Arabidopsis. Plant J. 57: 1128-1139 (2009).

Carrie C, Murcha MW, Millar AH, Smith SM, Whelan J. Nine 3-ketoacyl-CoA thiolases (KATs) and acetoacetyl-CoA thiolases (ACATs) encoded by five genes in Arabidopsis thaliana are targeted either to peroxisomes or cytosol but not to mitochondria. Plant Mol. Biol. 63: 97-108 (2007).

Carrier DJ, Abu Bakar NT, Swarup R, Callaghan R, Napier RM, Bennett MJ, Kerr ID. The binding of auxin to the Arabidopsis auxin influx transporter, AUX1. Plant Physiol. 148: 529-535 (2008).

Carrington JC. Small RNAs and Arabidopsis. A fast forward look. Plant Physiol. 138: 565-566 (2005).

Carter C, Pan S, Zouhar J, Avila EL, Girke T, Raikhel NV. The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. Plant Cell 16: 3285-3303 (2004).

Cartieaux F, Thibaud MC, Zimmerli L, Lessard P, Sarrobert C, David P, Gerbaud A, Robaglia C, Somerville S, Nussaume L. Transcriptome analysis of Arabidopsis colonized by a plant-growth promoting rhizobacterium reveals a general effect on disease resistance. Plant J. 36: 177-188 (2003).

Carvalho AD, Teodoro CED, Da Cunha M, Okorokova-Facanha AL, Okorokov LA, Fernandes KVS, Gomes VM. Intracellular localization of a lipid transfer protein in Vigna unguiculata seeds. Physiol. Plant. 122: 328-336 (2004).

Carvalho CM, Fontenelle MR, Florentino LH, Santos AA, Zerbini FM, Fontes EP. A novel nucleocytoplasmic traffic GTPase identified as a functional target of the bipartite geminivirus nuclear shuttle protein. Plant J. 55: 869-880 (2008).

Carvalho MF, Turgeon R, Lazarowitz SG. The geminivirus nuclear shuttle protein NSP inhibits the activity of AtNSI, a vascular-expressed Arabidopsis acetyltransferase regulated with the sink-to-source transition. Plant Physiol. 140: 1317-1330 (2006).

Cary AJ, Che P, Howell SH. Developmental events and shoot apical meristem gene expression patterns during shoot development in Arabidopsis thaliana. Plant J. 32: 867-877 (2002).

Cary AJ, Liu W, Howell SH. Cytokinin action is coupled to ethylene in its effects on the inhibition of root and hypocotyl elongation in Arabidopsis thaliana seedlings. Plant Physiol. 107: 1075-1082 (1995).

Caryl AP, Jones GH, Franklin FC. Dissecting plant meiosis using Arabidopsis thaliana mutants. J. Exp. Bot. 54: 25-38 (2003).

Casado A, Caballero JL, Franco AR, Cardenas J, Grant MR, Munoz-Blanco J. Molecular cloning of the gene encoding the L-asparaginase gene of Arabidopsis thaliana. Plant Physiol. 108: 1321-1322 (1995).

Casal JJ. Phytochrome A enhances the promotion of hypocotyl growth caused by reductions in levels of phytochrome B in its far-red-light-absorbing form in light-grown Arabidopsis thaliana. Plant Physiol. 112: 965-973 (1996).

Casal JJ. Coupling of phytochrome B to the control of hypocotyl growth in Arabidopsis. Planta 196: 23-29 (1995).

Casal JJ, Boccalandro H. Co-action between phytochrome B and HY4 in Arabidopsis thaliana. Planta 197: 213-218 (1995).

Casal JJ, Cerdan PD, Staneloni RJ, Cattaneo L. Different phototransduction kinetics of phytochrome A and phytochrome B in Arabidopsis thaliana. Plant Physiol. 116: 1533-1538 (1998).

Casal JJ, Davis SJ, Kirchenbauer D, Viczian A, Yanovsky MJ, Clough RC, Kircher S, Jordan-Beebe ET, Schafer E, Nagy F, Vierstra RD. The serine-rich N-terminal domain of oat phytochrome a helps regulate light responses and subnuclear localization of the photoreceptor. Plant Physiol. 129: 1127-1137 (2002).

Casal JJ, Mazzella MA. Conditional synergism between cryptochrome 1 and phytochrome B is shown by the analysis of phyA, phyB, and hy4 simple, double, and triple mutants in Arabidopsis. Plant Physiol. 118: 19-25 (1998).

Casas-Mollano JA, Lao NT, Kavanagh TA. Intron-regulated expression of SUVH3, an Arabidopsis Su(var)3-9 homologue. J. Exp. Bot. 57: 3301-3311 (2006).

Casazza AP, Basner A, Hofgen R, Hesse H. Expression of threonine synthase from Solanum tuberosum L. is not metabolically regulated by photosynthesis-related signals or by nitrogenous compounds. Plant Sci. 157: 43-50 (2000).

Casazza AP, Rossini S, Rosso MG, Soave C. Mutational and expression analysis of ELIP1 and ELIP2 in Arabidopsis thaliana. Plant Mol. Biol. 58: 41-51 (2005).

Casimiro I, Beeckman T, Graham N, Bhalerao R, Zhang H, Casero P, Sandberg G, Bennett MJ. Dissecting Arabidopsis lateral root development. Trends Plant Sci. 8: 165-171 (2003).

Cassin G, Mari S, Curie C, Briat JF, Czernic P. Increased sensitivity to iron deficiency in Arabidopsis thaliana overaccumulating nicotianamine. J. Exp. Bot. 60: 1249-1259 (2009).

Casson S, Spencer M, Walker K, Lindsey K. Laser capture microdissection for the analysis of gene expression during embryogenesis of Arabidopsis. Plant J. 42: 111-123 (2005).

Casson SA, Lindsey K. The turnip mutant of Arabidopsis reveals that LEAFY COTYLEDON1 expression mediates the effects of auxin and sugars to promote embryonic cell identity. Plant Physiol. 142: 526-541 (2006).

Casson SA, Topping JF, Lindsey K. MERISTEM-DEFECTIVE, an RS domain protein, is required for correct meristem patterning and function in Arabidopsis. Plant J. 57: 857-869 (2009).

Castells E, Casacuberta JM. Signalling through kinase-defective domains: the prevalence of atypical receptor-like kinases in plants. J. Exp. Bot. 58: 3503-3511 (2007).

Castells E, Puigdomenech P, Casacuberta JM. Regulation of the kinase activity of the MIK GCK-like MAP4K by alternative splicing. Plant Mol. Biol. 61: 747-756 (2006).

Castillejo C, Romera-Branchat M, Pelaz S. A new role of the Arabidopsis SEPALLATA3 gene revealed by its constitutive expression. Plant J. 43: 586-596 (2005).

Castillo MC, Leon J. Expression of the beta-oxidation gene 3-ketoacyl-CoA thiolase 2 (KAT2) is required for the timely onset of natural and dark-induced leaf senescence in Arabidopsis. J. Exp. Bot. 59: 2171-2179 (2008).

Castillo MC, Martinez C, Buchala A, Metraux JP, Leon J. Gene-specific involvement of {beta}-oxidation in wound-activated responses in Arabidopsis. Plant Physiol. 135: 85-94 (2004).

Castle J, Szekeres M, Jenkins G, Bishop GJ. Unique and overlapping expression patterns of Arabidopsis CYP85 genes involved in brassinosteroid C-6 oxidation. Plant Mol. Biol. 57: 129-140 (2005).

Castle LA, Siehl DL, Gorton R, Patten PA, Chen YH, Bertain S, Cho HJ, Duck N, Wong J, Liu D, Lassner MW. Discovery and directed evolution of a glyphosate tolerance gene. Science 304: 1151-1154 (2004).

Catala R, Santos E, Alonso JM, Ecker JR, Martinez-Zapater JM, Salinas J. Mutations in the Ca2+/H+ transporter CAX1 increase CBF/DREB1 expression and the cold-acclimation response in Arabidopsis. Plant Cell 15: 2940-2951 (2003).

Catalano CM, Czymmek KJ, Gann JG, Sherrier DJ. Medicago truncatula syntaxin SYP132 defines the symbiosome membrane and infection droplet membrane in root nodules. Planta 225: 541-550 (2007).

Catarecha P, Segura MD, Franco-Zorrilla JM, Garcia-Ponce B, Lanza M, Solano R, Paz-Ares J, Leyva A. A mutant of the Arabidopsis phosphate transporter PHT1;1 displays enhanced arsenic accumulation. Plant Cell 19: 1123-1133 (2007).

Causier B, Bradley D, Cook H, Davies B. Conserved intragenic elements were critical for the evolution of the floral C-function. Plant J. Nov 28 [Epub ahead of print] (2008).

Cavalier DM, Lerouxel O, Neumetzler L, Yamauchi K, Reinecke A, Freshour G, Zabotina OA, Hahn MG, Burgert I, Pauly M, Raikhel NV, Keegstra K. Disrupting two Arabidopsis thaliana xylosyltransferase genes results in plants deficient in xyloglucan, a major primary cell wall component. Plant Cell 20: 1519-1537 (2008).

Cazzonelli CI, Cuttriss AJ, Cossetto SB, Pye W, Crisp P, Whelan J, Finnegan EJ, Turnbull C, Pogson BJ. Regulation of carotenoid composition and shoot branching in Arabidopsis by a chromatin modifying histone methyltransferase, SDG8. Plant Cell 21: 39-53 (2009).

Cecchetti V, Altamura MM, Falasca G, Costantino P, Cardarelli M. Auxin regulates Arabidopsis anther dehiscence, pollen maturation, and filament elongation. Plant Cell 20: 1760-1774 (2008).

Cecchetti V, Pomponi M, Altamura MM, Pezzotti M, Marsilio S, D'Angeli S, Tornielli GB, Costantino P, Cardarelli M. Expression of rolB in tobacco flowers affects the coordinated processes of anther dehiscence and style elongation. Plant J. 38: 512-525 (2004).

Cedzich A, Stransky H, Schulz B, Frommer WB. Characterization of cytokinin and adenine transport in Arabidopsis cell cultures. Plant Physiol. 148: 1857-1867 (2008).

Celenza JL, Quiel JA, Smolen GA, Merrikh H, Silvestro AR, Normanly J, Bender J. The Arabidopsis ATR1 Myb transcription factor controls indolic glucosinolate homeostasis. Plant Physiol. 137: 253-262 (2005).

Cellier F, Conejero G, Ricaud L, Luu DT, Lepetit M, Gosti F, Casse F. Characterization of AtCHX17, a member of the cation/H exchangers, CHX family, from Arabidopsis thaliana suggests a role in K homeostasis. Plant J. 39: 834-846 (2004).

Centis-Aubay S, Gasset G, Mazars C, Ranjeva R, Graziana A. Changes in gravitational forces induce modifications of gene expression in A. thaliana seedlings. Planta 218: 179-185 (2003).

Cerdan PD, Staneloni RJ, Ortega J, Bunge MM, Rodriguez-Batiller MJ, Sanchez RA, Casal JJ. Sustained but not transient phytochrome A signaling targets a region of an Lhcb1*2 promoter not necessary for phytochrome B action. Plant Cell 12: 1203-1212 (2000).

Cerezo M, Tillard P, Filleur S, Munos S, Daniel-Vedele F, Gojon A. Major alterations of the regulation of root NO(3)(-) uptake are associated with the mutation of Nrt2.1 and Nrt2.2 genes in Arabidopsis. Plant Physiol. 127: 262-271 (2001).

Cernac A, Andre C, Hoffmann-Benning S, Benning C. WRI1 is required for seed germination and seedling establishment. Plant Physiol. 141: 745-757 (2006).

Cernac A, Benning C. WRINKLED1 encodes an AP2/EREB domain protein involved in the control of storage compound biosynthesis in Arabidopsis. Plant J. 40: 575-585 (2004).

Cerovic ZG, Ounis A, Cartelat A, Latouche G, Goulas Y, Meyer S, Moya I. The use of chlorophyll fluorescence excitation spectra for the non-destructive in situ assessment of UV-absorbing compounds in leaves. Plant Cell Environ. 25: 1663-1676 (2002).

Ceserani T, Trofka A, Gandotra N, Nelson T. VH1/BRL2 receptor-like kinase interacts with vascular-specific adaptor proteins VIT and VIK to influence leaf venation. Plant J. 57: 1000-1014 (2009).

Cha S, Zhang H, Ilarslan HI, Wurtele ES, Brachova L, Nikolau BJ, Yeung ES. Direct profiling and imaging of plant metabolites in intact tissues by using colloidal graphite-assisted laser desorption ionization (GALDI) mass spectrometry. Plant J. 55: 348-360 (2008).

Chaabouni S, Jones B, Delalande C, Wang H, Li Z, Mila I, Frasse P, Latche A, Pech JC, Bouzayen M. Sl-IAA3, a tomato Aux/IAA at the crossroads of auxin and ethylene signalling involved in differential growth. J. Exp. Bot. 60: 1349-1362 (2009).

Chaal BK, Ishida K, Green BR. A thylakoidal processing peptidase from the heterokont alga Heterosigma akashiwo. Plant Mol. Biol. 52: 463-472 (2003).

Chae HJ, Ke N, Kim HR, Chen S, Godzik A, Dickman M, Reed JC. Evolutionarily conserved cytoprotection provided by Bax Inhibitor-1 homologs from animals, plants, and yeast. Gene 323: 101-113 (2003).

Chae HS, Faure F, Kieber JJ. The eto1, eto2, and eto3 mutations and cytokinin treatment increase ethylene biosynthesis in Arabidopsis by increasing the stability of ACS protein. Plant Cell 15: 545-559 (2003).

Chae HS, Kieber JJ. Eto Brute? Role of ACS turnover in regulating ethylene biosynthesis. Trends Plant Sci. 10: 291-296 (2005).

Chai MF, Chen QJ, An R, Chen YM, Chen J, Wang XC. NADK2, an Arabidopsis chloroplastic NAD kinase, plays a vital role in both chlorophyll synthesis and chloroplast protection. Plant Mol. Biol. 59: 553-564 (2005).

Chai MF, Wei PC, Chen QJ, An R, Chen J, Yang S, Wang XC. NADK3, a novel cytoplasmic source of NADPH, is required under conditions of oxidative stress and modulates abscisic acid responses in Arabidopsis. Plant J. 47: 665-674 (2006).

Chaiwongsar S, Otegui MS, Jester PJ, Monson SS, Krysan PJ. The protein kinase genes MAP3K epsilon 1 and MAP3K epsilon 2 are required for pollen viability in Arabidopsis thaliana. Plant J. 48: 193-205 (2006).

Chak RK, Thomas TL, Quatrano RS, Rock CD. The genes ABI1 and ABI2 are involved in abscisic acid- and drought-inducible expression of the Daucus carota L. Dc3 promoter in guard cells of transgenic Arabidopsis thaliana (L.) Heynh. Planta 210: 875-883 (2000).

Chakravarthy S, Tuori RP, D'Ascenzo MD, Fobert PR, Despres C, Martin GB. The tomato transcription factor Pti4 regulates defense-related gene expression via GCC box and non-GCC box cis elements. Plant Cell 15: 3033-3050 (2003).

Chan CS, Guo L, Shih MC. Promoter analysis of the nuclear gene encoding the chloroplast glyceraldehyde-3-phosphate dehydrogenase B subunit of Arabidopsis thaliana. Plant Mol. Biol. 46: 131-141 (2001).

Chan CS, Peng HP, Shih MC. Mutations affecting light regulation of nuclear genes encoding chloroplast glyceraldehyde-3-phosphate dehydrogenase in Arabidopsis. Plant Physiol. 130: 1476-1486 (2002).

Chan J, Calder G, Fox S, Lloyd C. Localization of the microtubule end binding protein EB1 reveals alternative pathways of spindle development in Arabidopsis suspension cells. Plant Cell 17: 1737-1748 (2005).

Chan J, Peter Pauls K. Brassica napus Rop GTPases and their expression in microspore cultures. Planta 225: 469-484 (2007).

Chan SY, Appling DR. Regulation of S-adenosylmethionine levels in Saccharomyces cerevisiae. J. Biol. Chem. 278: 43051-43059 (2003).

Chan YL, Prasad V, Sanjaya, Chen KH, Liu PC, Chan MT, Cheng CP. Transgenic tomato plants expressing an Arabidopsis thionin (Thi2.1) driven by fruit-inactive promoter battle against phytopathogenic attack. Planta 221: 386-393 (2005).

Chanda B, Venugopal SC, Kulshrestha S, Navarre DA, Downie B, Vaillancourt L, Kachroo A, Kachroo P. Glycerol-3-phosphate levels are associated with basal resistance to the hemibiotrophic fungus Colletotrichum higginsianum in Arabidopsis. Plant Physiol. 147: 2017-2029 (2008).

Chandler J, Wilson A, Dean C. Arabidopsis mutants showing an altered response to vernalization. Plant J. 10: 637-644 (1996).

Chandler JW. Cotyledon organogenesis. J. Exp. Bot. 59: 2917-2931 (2008).

Chandler JW, Bartels D. Structure and function of the vp1 gene homologue from the resurrection plant Craterostigma plantagineum Hochst. Mol. Gen. Genet. 256: 539-546 (1997).

Chandler JW, Melzer S. An alpha-crystallin gene, ACD31.2 from Arabidopsis is negatively regulated by FPF1 overexpression, floral induction, gibberellins, and long days. J. Exp. Bot. 55: 1433-1435 (2004).

Chandler PM, Marion-Poll A, Ellis M, Gubler F. Mutants at the Slender1 locus of barley cv Himalaya. Molecular and physiological characterization. Plant Physiol. 129: 181-190 (2002).

Chandra A, Upadhyaya KC. Structure and organization of a novel calmodulin gene of Arabidopsis thaliana. Cell Mol. Biol. Res. 39: 509-516 (1993).

Chandra-Shekara AC, Gupte M, Navarre D, Raina S, Raina R, Klessig D, Kachroo P. Light-dependent hypersensitive response and resistance signaling against Turnip Crinkle Virus in Arabidopsis. Plant J. 45: 320-334 (2006).

Chandra-Shekara AC, Navarre D, Kachroo A, Kang HG, Klessig D, Kachroo P. Signaling requirements and role of salicylic acid in HRT- and rrt-mediated resistance to turnip crinkle virus in Arabidopsis. Plant J. 40: 647-659 (2004).

Chandran D, Tai YC, Hather G, Dewdney J, Denoux C, Burgess DG, Ausubel FM, Speed TP, Wildermuth MC. Temporal global expression data reveal known and novel salicylate-impacted processes and regulators mediating powdery mildew growth and reproduction on Arabidopsis. Plant Physiol. 149: 1435-1451 (2009).

Chandrasekharan MB, Bishop KJ, Hall TC. Module-specific regulation of the beta-phaseolin promoter during embryogenesis. Plant J. 33: 853-866 (2003).

Chaney RL, Malik M, Li YM, Brown SL, Brewer EP, Angle JS, Baker AJ. Phytoremediation of soil metals. Curr. Opin. Biotechnol. 8: 279-284 (1997).

Chang A, Lim MH, Lee SW, Robb J, Nazar RN. Tomato PAL gene family: highly redundant but strongly underutilized. J. Biol. Chem. 283: 33591-33601 (2008).

Chang AK, Duggleby RG. Expression, purification and characterization of Arabidopsis thaliana acetohydroxyacid synthase. Biochem. J. 327: 161-169 (1997).

Chang AK, Duggleby RG. Herbicide-resistant forms of Arabidopsis thaliana acetohydroxyacid synthase: characterization of the catalytic properties and sensitivity to inhibitors of four defined mutants. Biochem. J. 333: 765-777 (1998).

Chang C, Meyerowitz EM. Molecular cloning and DNA sequence of the Arabidopsis thaliana alcohol dehydrogenase gene. Proc. Natl. Acad. Sci. U.S.A. 83: 1408-1412 (1986).

Chang CC, Ball L, Fryer MJ, Baker NR, Karpinski S, Mullineaux PM. Induction of ASCORBATE PEROXIDASE 2 expression in wounded Arabidopsis leaves does not involve known wound-signalling pathways but is associated with changes in photosynthesis. Plant J. 38: 499-511 (2004).

Chang CC, Slesak I, Jorda L, Sotnikov A, Melzer M, Miszalski Z, Mullineaux PM, Parker JE, Karpinska B, Karpinski S. Arabidopsis chloroplastic glutathione peroxidases play a role in cross talk between photooxidative stress and immune responses. Plant Physiol. 150: 670-83 (2009).

Chang CS, Li YH, Chen LT, Chen WC, Hsieh WP, Shin J, Jane WN, Chou SJ, Choi G, Hu JM, Somerville S, Wu SH. LZF1, a HY5-regulated transcriptional factor, functions in Arabidopsis de-etiolation. Plant J. 54: 205-219 (2008).

Chang CW, Moseley JL, Wykoff D, Grossman AR. The LPB1 gene is important for acclimation of Chlamydomonas reinhardtii to phosphorus and sulfur deprivation. Plant Physiol. 138: 319-329 (2005).

Chang CW, Sun TP. Characterization of cis-regulatory regions responsible for developmental regulation of the gibberellin biosynthetic gene GA1 in Arabidopsis thaliana. Plant Mol. Biol. 49: 579-589 (2002).

Chang HC, Bush DR. Topology of NAT2, a prototypical example of a new family of amino acid transporters. J. Biol. Chem. 272: 30552-30557 28 (1997).

Chang IF, Curran A, Woolsey R, Quilici D, Cushman JC, Mittler R, Harmon A, Harper JF. Proteomic profiling of tandem affinity purified 14-3-3 protein complexes in Arabidopsis thaliana. Proteomics 9: 2967-2985 (2009).

Chang IF, Szick-Miranda K, Pan S, Bailey-Serres J. Proteomic characterization of evolutionarily conserved and variable proteins of Arabidopsis cytosolic ribosomes. Plant Physiol. 137: 848-862 (2005).

Chang M, Wang B, Chen X, Wu R. Molecular characterization of catalytic-subunit cDNA sequences encoding protein phosphatases 1 and 2A and study of their roles in the gibberellin-dependent Osamy-c expression in rice. Plant Mol. Biol. 39: 105-115 (1999).

Chang SC, Kim YS, Lee JY, Kaufman PB, Kirakosyan A, Yun HS, Kim TW, Kim SY, Cho MH, Lee JS, Kim SK. Brassinolide interacts with auxin and ethylene in the root gravitropic response of maize (Zea mays). Physiol. Plant. 121: 666-673 (2004).

Chao Q, Rothenberg M, Solano R, Roman G, Terzaghi W, Ecker JR. Activation of the ethylene gas response pathway in Arabidopsis by the nuclear protein ETHYLENE-INSENSITIVE3 and related proteins. Cell 89: 1133-1144 (1997).

Chapple CC. A cDNA encoding a novel cytochrome P450-dependent monooxygenase from Arabidopsis thaliana. Plant Physiol. 108: 875-876 (1995).

Chapple CC, Vogt T, Ellis BE, Somerville CR. An Arabidopsis mutant defective in the general phenylpropanoid pathway. Plant Cell 4: 1413-1424 (1992).

Charlton WL, Matsui K, Johnson B, Graham IA, Ohme-Takagi M, Baker A. Salt-induced expression of peroxisome-associated genes requires components of the ethylene, jasmonate and abscisic acid signalling pathways. Plant Cell Environ. 28: 513-524 (2005).

Charng YY, Liu HC, Liu NY, Chi WT, Wang CN, Chang SH, Wang TT. A heat-inducible transcription factor, HsfA2, is required for extension of acquired thermotolerance in Arabidopsis. Plant Physiol. 143: 251-262 (2007).

Charng YY, Liu HC, Liu NY, Hsu FC, Ko SS. Arabidopsis Hsa32, a novel heat shock protein, is essential for acquired thermotolerance during long recovery after acclimation. Plant Physiol. 140: 1297-1305 (2006).

Charrier B, Champion A, Henry Y, Kreis M. Expression profiling of the whole Arabidopsis shaggy-like kinase multigene family by real-time reverse transcriptase-polymerase chain reaction. Plant Physiol. 130: 577-590 (2002).

Chassin Y, Kapri-Pardes E, Sinvany G, Arad T, Adam Z. Expression and characterization of the thylakoid lumen protease DegP1 from Arabidopsis. Plant Physiol. 130: 857-864 (2002).

Chassot C, Buchala A, Schoonbeek HJ, Metraux JP, Lamotte O. Wounding of Arabidopsis leaves causes a powerful but transient protection against Botrytis infection. Plant J. 55: 555-567 (2008).

Chassot C, Nawrath C, Métraux JP. Cuticular defects lead to full immunity to a major plant pathogen. Plant J. 49: 972-980 (2007).

Chastain CJ, Xu W, Parsley K, Sarath G, Hibberd JM, Chollet R. The pyruvate, orthophosphate dikinase regulatory proteins of Arabidopsis possess a novel, unprecedented Ser/Thr protein kinase primary structure. Plant J. 53: 854-863 (2008).

Chatelet P, Laucou V, Fernandez L, Sreekantan L, Lacombe T, Martinez-Zapater JM, Thomas MR, Torregrosa L. Characterization of Vitis vinifera L. somatic variants exhibiting abnormal flower development patterns. J. Exp. Bot. 58: 4107-4118 (2007).

Chatfield SP, Raizada MN. Ethylene and shoot regeneration: hookless1 modulates de novo shoot organogenesis in Arabidopsis thaliana. Plant Cell Rep. 27: 655-666 (2008).

Chatre L, Brandizzi F, Hocquellet A, Hawes C, Moreau P. Sec22 and Memb11 are v-SNAREs of the anterograde endoplasmic reticulum-Golgi pathway in tobacco leaf epidermal cells. Plant Physiol. 139: 1244-1254 (2005).

Chatterjee M, Sharma P, Khurana JP. Cryptochrome 1 from Brassica napus is up-regulated by blue light and controls hypocotyl/stem growth and anthocyanin accumulation. Plant Physiol. 141: 61-74 (2006).

Chattopadhyay S, Ang LH, Puente P, Deng XW, Wei N. Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression. Plant Cell 10: 673-683 (1998).

Chaturvedi R, Krothapalli K, Makandar R, Nandi A, Sparks AA, Roth MR, Welti R, Shah J. Plastid omega3-fatty acid desaturase-dependent accumulation of a systemic acquired resistance inducing activity in petiole exudates of Arabidopsis thaliana is independent of jasmonic acid. Plant J. 54: 106-117 (2008).

Chaudhuri B, Hormann F, Lalonde S, Brady SM, Orlando DA, Benfey P, Frommer WB. Protonophore- and pH-insensitive glucose and sucrose accumulation detected by FRET nanosensors in Arabidopsis root tips. Plant J. 56: 948-962 (2008).

Chauhan S, Forsthoefel N, Ran Y, Quigley F, Nelson DE, Bohnert HJ. Na+/myo-inositol symporters and Na+/H+-antiport in Mesembryanthemum crystallinum. Plant J. 24: 511-522 (2000).

Chaumont F, Barrieu F, Herman EM, Chrispeels MJ. Characterization of a maize tonoplast aquaporin expressed in zones of cell division and elongation. Plant Physiol. 117: 1143-1152 (1998).

Chaumont F, Barrieu F, Jung R, Chrispeels MJ. Plasma membrane intrinsic proteins from maize cluster in two sequence subgroups with differential aquaporin activity. Plant Physiol. 122: 1025-1034 (2000).

Chawade A, Brautigam M, Lindlof A, Olsson O, Olsson B. Putative cold acclimation pathways in Arabidopsis thaliana identified by a combined analysis of mRNA co-expression patterns, promoter motifs and transcription factors. BMC Genomics 8: 304 (2007).

Chawla R, Nicholson SJ, Folta KM, Srivastava V. Transgene-induced silencing of Arabidopsis phytochrome A gene via exonic methylation. Plant J. 52: 1105-1118 (2007).

Che P, Gingerich DJ, Lall S, Howell SH. Global and hormone-induced gene expression changes during shoot development in Arabidopsis. Plant Cell 14: 2771-2785 (2002).

Che P, Lall S, Howell SH. Developmental steps in acquiring competence for shoot development in Arabidopsis tissue culture. Planta 226: 1183-1194 (2007).

Che P, Lall S, Nettleton D, Howell SH. Gene expression programs during shoot, root, and callus development in Arabidopsis tissue culture. Plant Physiol. 141: 620-637 (2006).

Che P, Weaver LM, Wurtele ES, Nikolau BJ. The role of biotin in regulating 3-methylcrotonyl-coenzyme a carboxylase expression in Arabidopsis. Plant Physiol. 131: 1479-1486 (2003).

Che P, Wurtele ES, Nikolau BJ. Metabolic and environmental regulation of 3-methylcrotonyl-coenzyme A carboxylase expression in Arabidopsis. Plant Physiol. 129: 625-637 (2002).

Chehab EW, Patharkar OR, Cushman JC. Isolation and characterization of a novel v-SNARE family protein that interacts with a calcium-dependent protein kinase from the common ice plant, Mesembryanthemum crystallinum. Planta 225: 783-799 (2007).

Chehab EW, Raman G, Walley JW, Perea JV, Banu G, Theg S, Dehesh K. Rice HYDROPEROXIDE LYASES with unique expression patterns generate distinct aldehyde signatures in Arabidopsis. Plant Physiol. 141: 121-134 (2006).

Chen A, Komives EA, Schroeder JI. An improved grafting technique for mature Arabidopsis plants demonstrates long-distance shoot-to-root transport of phytochelatins in Arabidopsis. Plant Physiol. 141: 108-120 (2006).

Chen C, Chen Z. Potentiation of developmentally regulated plant defense response by AtWRKY18, a pathogen-induced Arabidopsis transcription factor. Plant Physiol. 129: 706-716 (2002).

Chen C, Zhang W, Timofejeva L, Gerardin Y, Ma H. The Arabidopsis ROCK-N-ROLLERS gene encodes a homolog of the yeast ATP-dependent DNA helicase MER3 and is required for normal meiotic crossover formation. Plant J. 43: 321-334 (2005).

Chen CC, Liang CS, Kao AL, Yang CC. HHP1 is involved in osmotic stress sensitivity in Arabidopsis. J. Exp. Bot. 60: 1589-1604 (2009).

Chen CN, Chen HR, Yeh SY, Vittore G, Ho TH. Autophagy is enhanced and floral development is impaired in AtHVA22d RNA interference Arabidopsis. Plant Physiol. 149: 1679-1689 (2009).

Chen CN, Chu CC, Zentella R, Pan SM, Ho TH. AtHVA22 gene family in Arabidopsis: phylogenetic relationship, ABA and stress regulation, and tissue-specific expression. Plant Mol. Biol. 49: 633-644 (2002).

Chen CT, Chen LM, Lin CC, Kao CH. Regulation of proline accumulation in detached rice leaves exposed to excess copper. Plant Sci. 160: 283-290 (2001).

Chen DL, Delatorre CA, Bakker A, Abel S. Conditional identification of phosphate-starvation-response mutants in Arabidopsis thaliana. Planta 211: 13-22 (2000).

Chen F, D'Auria JC, Tholl D, Ross JR, Gershenzon J, Noel JP, Pichersky E. An Arabidopsis thaliana gene for methylsalicylate biosynthesis, identified by a biochemical genomics approach, has a role in defense. Plant J. 36: 577-588 (2003).

Chen F, Ro DK, Petri J, Gershenzon J, Bohlmann J, Pichersky E, Tholl D. Characterization of a root-specific Arabidopsis terpene synthase responsible for the formation of the volatile monoterpene 1,8-cineole. Plant Physiol. 135: 1956-1966 (2004).

Chen F, Tholl D, D'Auria JC, Farooq A, Pichersky E, Gershenzon J. Biosynthesis and emission of terpenoid volatiles from Arabidopsis flowers. Plant Cell 15: 481-494 (2003).

Chen G, Alexander L, Grierson D. Constitutive expression of EIL-like transcription factor partially restores ripening in the ethylene-insensitive Nr tomato mutant. J. Exp. Bot. 55: 1491-1497 (2004).

Chen G, Bi YR, Li N. EGY1 encodes a membrane-associated and ATP-independent metalloprotease that is required for chloroplast development. Plant J. 41: 364-375 (2005).

Chen H, Shen Y, Tang X, Yu L, Wang J, Guo L, Zhang Y, Zhang H, Feng S, Strickland E, Zheng N, Deng XW. Arabidopsis CULLIN4 forms an E3 ubiquitin ligase with RBX1 and the CDD complex in mediating light control of development. Plant Cell 18: 1991-2004 (2006).

Chen H, Xiong L. Pyridoxine is required for post-embryonic root development and tolerance to osmotic and oxidative stresses. Plant J. 44: 396-408 (2005).

Chen H, Xiong L. The short-rooted vitamin B6-deficient mutant pdx1 has impaired local auxin biosynthesis. Planta 229: 1303-1310 (2009).

Chen H, Zhang D, Guo J, Wu H, Jin M, Lu Q, Lu C, Zhang L. A Psb27 homologue in Arabidopsis thaliana is required for efficient repair of photodamaged photosystem II. Plant Mol. Biol. 61: 567-575 (2006).

Chen HC, Yokthongwattana K, Newton AJ, Melis A. SulP, a nuclear gene encoding a putative chloroplast-targeted sulfate permease in Chlamydomonas reinhardtii. Planta 218: 98-106 (2003).

Chen IP, Haehnel U, Altschmied L, Schubert I, Puchta H. The transcriptional response of Arabidopsis to genotoxic stress - a high-density colony array study (HDCA). Plant J. 35: 771-786 (2003).

Chen J, Burke JJ, Velten J, Xin Z. FtsH11 protease plays a critical role in Arabidopsis thermotolerance. Plant J. 48: 73-84 (2006).

Chen J, Li WX, Xie D, Peng JR, Ding SW. Viral virulence protein suppresses RNA silencing-mediated defense but upregulates the role of microRNA in host gene expression. Plant Cell 16: 1302-1313 (2004).

Chen JG, Gao Y, Jones AM. Differential roles of Arabidopsis heterotrimeric G-protein subunits in modulating cell division in roots. Plant Physiol. 141: 887-897 (2006).

Chen JG, Pandey S, Huang J, Alonso JM, Ecker JR, Assmann SM, Jones AM. GCR1 can act independently of heterotrimeric G-protein in response to brassinosteroids and gibberellins in Arabidopsis seed germination. Plant Physiol. 135: 907-915 (2004).

Chen JG, Ullah H, Temple B, Liang J, Guo J, Alonso JM, Ecker JR, Jones AM. RACK1 mediates multiple hormone responsiveness and developmental processes in Arabidopsis. J. Exp. Bot. 57: 2697-2708 (2006).

Chen K, Du L, Chen Z. Sensitization of defense responses and activation of programmed cell death by a pathogen-induced receptor-like protein kinase in Arabidopsis. Plant Mol. Biol. 53: 61-74 (2003).

Chen L, Bush DR. LHT1, a lysine- and histidine-specific amino acid transporter in Arabidopsis. Plant Physiol. 115: 1127-1134 (1997).

Chen L, Carpita NC, Reiter WD, Wilson RH, Jeffries C, McCann MC. A rapid method to screen for cell-wall mutants using discriminant analysis of Fourier transform infrared spectra. Plant J. 16: 385-392 (1998).

Chen L, Ortiz-Lopez A, Jung A, Bush DR. ANT1, an aromatic and neutral amino acid transporter in Arabidopsis. Plant Physiol. 125: 1813-1820 (2001).

Chen LM, Li KZ, Miwa T, Izui K. Overexpression of a cyanobacterial phosphoenolpyruvate carboxylase with diminished sensitivity to feedback inhibition in Arabidopsis changes amino acid metabolism. Planta 219: 440-449 (2004).

Chen M. Phytochrome nuclear body: an emerging model to study interphase nuclear dynamics and signaling. Curr. Opin. Plant Biol. 11: 503-508 (2008).

Chen M, Markham JE, Dietrich CR, Jaworski JG, Cahoon EB. Sphingolipid long-chain base hydroxylation is important for growth and regulation of sphingolipid content and composition in Arabidopsis. Plant Cell 20: 1862-1878 (2008).

Chen M, Mooney BP, Hajduch M, Joshi T, Zhou M, Xu D, Thelen JJ. System analysis of an Arabidopsis mutant altered in de novo fatty acid synthesis reveals diverse changes in seed composition and metabolism. Plant Physiol. 150: 27-41 (2009).

Chen M, Xu Z, Xia L, Li L, Cheng X, Dong J, Wang Q, Ma Y. Cold-induced modulation and functional analyses of the DRE-binding transcription factor gene, GmDREB3, in soybean (Glycine max L.). J. Exp. Bot. 60: 121-135 (2009).

Chen MK, Lin IC, Yang CH. Functional analysis of three lily (Lilium longiflorum) APETALA1-like MADS box genes in regulating floral transition and formation. Plant Cell Physiol. 49: 704-717 (2008).

Chen PY, Lee KT, Chi WC, Hirt H, Chang CC, Huang HJ. Possible involvement of MAP kinase pathways in acquired metal-tolerance induced by heat in plants. Planta 228: 499-509 (2008).

Chen QF, Xiao S, Chye ML. Overexpression of the Arabidopsis 10-kD acyl-CoA-binding protein, ACBP6, enhances freezing tolerance. Plant Physiol. 148: 304-315 (2008).

Chen QG, Bleecker AB. Analysis of ethylene signal-transduction kinetics associated with seedling-growth response and chitinase induction in wild-type and mutant Arabidopsis. Plant Physiol. 108: 597-607 (1995).

Chen RM, Ni ZF, Nie XL, Qin YX, Dong GQ, Sun QX. Isolation and characterization of genes encoding Myb transcription factor in wheat (Triticum aestivem L.). Plant Sci. 169: 1146-1154 (2005).

Chen S, Glawischnig E, Jorgensen K, Naur P, Jorgensen B, Olsen CE, Hansen CH, Rasmussen H, Pickett JA, Halkier BA. CYP79F1 and CYP79F2 have distinct functions in the biosynthesis of aliphatic glucosinolates in Arabidopsis. Plant J. 33: 923-937 (2003).

Chen S, Jin W, Wang M, Zhang F, Zhou J, Jia Q, Wu Y, Liu F, Wu P. Distribution and characterization of over 1000 T-DNA tags in rice genome. Plant J. 36: 105-113 (2003).

Chen S, Petersen BL, Olsen CE, Schulz A, Halkier BA. Long-distance phloem transport of glucosinolates in Arabidopsis. Plant Physiol. 127: 194-201 (2001).

Chen TH, Murata N. Enhancement of tolerance of abiotic stress by metabolic engineering of betaines and other compatible solutes. Curr. Opin. Plant Biol. 5: 250-257 (2002).

Chen W, Provart NJ, Glazebrook J, Katagiri F, Chang HS, Eulgem T, Mauch F, Luan S, Zou G, Whitham SA, Budworth PR, Tao Y, Xie Z, Chen X, Lam S, Kreps JA, Harper JF, Si-Ammour A, Mauch-Mani B, Heinlein M, Kobayashi K, Hohn T, Dangl JL, Wang X, Zhu T. Expression profile matrix of Arabidopsis transcription factor genes suggests their putative functions in response to environmental stresses. Plant Cell 14: 559-574 (2002).

Chen WP, Li PH. Membrane stabilization by abscisic acid under cold aids proline in alleviating chilling injury in maize (Zea mays L.) cultured cells. Plant Cell Environ. 25: 955-962 (2002).

Chen X. MicroRNA biogenesis and function in plants. FEBS Lett. 579: 5923-5931 (2005).

Chen X, Goodwin SM, Boroff VL, Liu X, Jenks MA. Cloning and characterization of the WAX2 gene of Arabidopsis involved in cuticle membrane and wax production. Plant Cell 15: 1170-1185 (2003).

Chen X, Goodwin SM, Liu X, Chen X, Bressan RA, Jenks MA. Mutation of the RESURRECTION1 locus of Arabidopsis reveals an association of cuticular wax with embryo development. Plant Physiol. 139: 909-919 (2005).

Chen X, Smith MD, Fitzpatrick L, Schnell DJ. In vivo analysis of the role of atTic20 in protein import into chloroplasts. Plant Cell 14: 641-654 (2002).

Chen XY, Liu L, Lee E, Han X, Rim Y, Chu H, Kim SW, Sack F, Kim JY. The Arabidopsis callose synthase gene GSL8 is required for cytokinesis and cell patterning. Plant Physiol. 150: 105-113 (2009).

Chen Y, Asano T, Fujiwara MT, Yoshida S, Machida Y, Yoshioka Y. Plant cells without detectable plastids are generated in the crumpled leaf mutant of Arabidopsis thaliana. Plant Cell Physiol. 50: 956-969 (2009).

Chen Y, Ji F, Xie H, Liang J. Overexpression of the regulator of G-protein signalling protein enhances ABA-mediated inhibition of root elongation and drought tolerance in Arabidopsis. J. Exp. Bot. 57: 2101-2110 (2006).

Chen Y, Ji F, Xie H, Liang J, Zhang J. The regulator of G-protein signaling proteins involved in sugar and abscisic acid signaling in Arabidopsis seed germination. Plant Physiol. 140: 302-310 (2006).

Chen YC, Tseng BW, Huang YL, Liu YC, Jeng ST. Expression of the ipomoelin gene from sweet potato is regulated by dephosphorylated proteins, calcium ion and ethylene. Plant Cell Environ. 26: 1373-1383 (2003).

Chen YH, Wu XM, Ling HQ, Yang WC. Transgenic expression of DwMYB2 impairs iron transport from root to shoot in Arabidopsis thaliana. Cell. Res. 16: 830-840 (2006).

Chen YL, Huang R, Xiao YM, Lu P, Chen J, Wang XC. Extracellular calmodulin-induced stomatal closure is mediated by heterotrimeric G protein and H2O2. Plant Physiol. 136: 4096-4103 (2004).

Chen YM, Ferrar TS, Lohmeir-Vogel EM, Morrice N, Mizuno Y, Berenger B, Ng KK, Muench DG, Moorhead GB. The PII signal transduction protein of Arabidopsis thaliana forms an arginine regulated complex with plastid N-acetyl glutamate kinase. J. Biol. Chem. 281: 5726-5733 (2006).

Chen YN, Slabaugh E, Brandizzi F. Membrane-tethered transcription factors in Arabidopsis thaliana: novel regulators in stress response and development. Curr. Opin. Plant Biol. 11: 695-701 (2008).

Chen Z, Hartmann HA, Wu MJ, Friedman EJ, Chen JG, Pulley M, Schulze-Lefert P, Panstruga R, Jones AM. Expression analysis of the AtMLO gene family encoding plant-specific seven-transmembrane domain proteins. Plant Mol. Biol. 60: 583-597 (2006).

Chen Z, Hong X, Zhang H, Wang Y, Li X, Zhu JK, Gong Z. Disruption of the cellulose synthase gene, AtCesA8/IRX1, enhances drought and osmotic stress tolerance in Arabidopsis. Plant J. 43: 273-283 (2005).

Chen Z, Kloek AP, Cuzick A, Moeder W, Tang D, Innes RW, Klessig DF, McDowell JM, Kunkel BN. The Pseudomonas syringae type III effector AvrRpt2 functions downstream or independently of SA to promote virulence on Arabidopsis thaliana. Plant J. 37: 494-504 (2004).

Chen Z, Ulmasov B, Folk WR. Nonsense and missense translational suppression in plant cells mediated by tRNA(Lys). Plant Mol. Biol. 36: 163-170 (1998).

Chen ZH, Jenkins GI, Nimmo HG. pH and carbon supply control the expression of phosphoenolpyruvate carboxylase kinase genes in Arabidopsis thaliana. Plant Cell Environ. 31: 1844-1850 (2008).

Chen ZH, Jenkins GI, Nimmo HG. Identification of an F box protein that negatively regulates Pi starvation responses. Plant Cell Physiol. 49: 1902-1906 (2008).

Cheng AX, Xiang CY, Li JX, Yang CQ, Hu WL, Wang LJ, Lou YG, Chen XY. The rice (E)-beta-caryophyllene synthase (OsTPS3) accounts for the major inducible volatile sesquiterpenes. Phytochemistry 68: 1632-1641 (2007).

Cheng CL, Acedo GN, Cristinsin M, Conkling MA. Sucrose mimics the light induction of Arabidopsis nitrate reductase gene transcription. Proc. Natl. Acad. Sci. U.S.A. 89: 1861-1864 (1992).

Cheng JC, Lertpiriyapong K, Wang S, Sung ZR. The role of the Arabidopsis ELD1 gene in cell development and photomorphogenesis in darkness. Plant Physiol. 123: 509-520 (2000).

Cheng JC, Seeley KA, Sung ZR. RML1 and RML2, Arabidopsis genes required for cell proliferation at the root tip. Plant Physiol. 107: 365-376 (1995).

Cheng L, Huan S, Sheng Y, Hua X, Shu Q, Song S, Jing X. GMCHI, cloned from soybean [Glycine max (L.) Meer.], enhances survival in transgenic Arabidopsis under abiotic stress. Plant Cell Rep. 28: 145-153 (2009).

Cheng NH, Liu JZ, Nelson RS, Hirschi KD. Characterization of CXIP4, a novel Arabidopsis protein that activates the H+/Ca2+ antiporter, CAX1. FEBS Lett. 559: 99-106 (2004).

Cheng NH, Pittman JK, Barkla BJ, Shigaki T, Hirschi KD. The Arabidopsis cax1 mutant exhibits impaired ion homeostasis, development, and hormonal responses and reveals interplay among vacuolar transporters. Plant Cell 15: 347-364 (2003).

Cheng NH, Pittman JK, Shigaki T, Hirschi KD. Characterization of CAX4, an Arabidopsis H(+)/cation antiporter. Plant Physiol. 128: 1245-1254 (2002).

Cheng NH, Pittman JK, Shigaki T, Lachmansingh J, Leclere S, Lahner B, Salt DE, Hirschi KD. Functional association of Arabidopsis CAX1 and CAX3 is required for normal growth and ion homeostasis. Plant Physiol. 138: 2048-2060 (2005).

Cheng Q, Liu HT, Bombelli P, Smith A, Slabas AR. Functional identification of AtFao3, a membrane bound long chain alcohol oxidase in Arabidopsis thaliana. FEBS Lett. 574: 62-68 (2004).

Cheng S, Sheen J, Gerrish C, Bolwell GP. Molecular identification of phenylalanine ammonia-lyase as a substrate of a specific constitutively active Arabidopsis CDPK expressed in maize protoplasts. FEBS Lett. 503: 185-188 (2001).

Cheng SH, Cline K, DeLisle AJ. An Arabidopsis chloroplast RNA-binding protein gene encodes multiple mRNAs with different 5' ends. Plant Physiol. 106: 303-311 (1994).

Cheng SH, Willmann MR, Chen HC, Sheen J. Calcium signaling through protein kinases. The Arabidopsis calcium-dependent protein kinase gene family. Plant Physiol. 129: 469-485 (2002).

Cheng WH, Endo A, Zhou L, Penney J, Chen HC, Arroyo A, Leon P, Nambara E, Asami T, Seo M, Koshiba T, Sheen J. A unique short-chain dehydrogenase/reductase in Arabidopsis glucose signaling and abscisic acid biosynthesis and functions. Plant Cell 14: 2723-2743 (2002).

Cheng XF, Wang ZY. Overexpression of COL9, a CONSTANS-LIKE gene, delays flowering by reducing expression of CO and FT in Arabidopsis thaliana. Plant J. 43: 758-768 (2005).

Cheng Y, Dai X, Zhao Y. AtCAND1, a HEAT--repeat protein that participates in auxin signaling in Arabidopsis. Plant Physiol. 135: 1020-1026 (2004).

Cheng Z, Sattler S, Maeda H, Sakuragi Y, Bryant DA, DellaPenna D. Highly divergent methyltransferases catalyze a conserved reaction in tocopherol and plastoquinone synthesis in cyanobacteria and photosynthetic eukaryotes. Plant Cell 15: 2343-2356 (2003).

Cheong NE, Choi YO, Lee KO, Kim WY, Jung BG, Chi YH, Jeong JS, Kim K, Cho MJ, Lee SY. Molecular cloning, expression, and functional characterization of a 2Cys-peroxiredoxin in Chinese cabbage. Plant Mol. Biol. 40: 825-834 (1999).

Cheong YH, Chang HS, Gupta R, Wang X, Zhu T, Luan S. Transcriptional profiling reveals novel interactions between wounding, pathogen, abiotic stress, and hormonal responses in Arabidopsis. Plant Physiol. 129: 661-677 (2002).

Cheong YH, Kim KN, Pandey GK, Gupta R, Grant JJ, Luan S. CBL1, a calcium sensor that differentially regulates salt, drought, and cold responses in Arabidopsis. Plant Cell 15: 1833-1845 (2003).

Cheong YH, Moon BC, Kim JK, Kim CY, Kim MC, Kim IH, Park CY, Kim JC, Park BO, Koo SC, Yoon HW, Chung WS, Lim CO, Lee SY, Cho MJ. BWMK1, a rice mitogen-activated protein kinase, locates in the nucleus and mediates pathogenesis-related gene expression by activation of a transcription factor. Plant Physiol. 132: 1961-1972 (2003).

Cheong YH, Pandey GK, Grant JJ, Batistic O, Li L, Kim BG, Lee SC, Kudla J, Luan S. Two calcineurin B-like calcium sensors, interacting with protein kinase CIPK23, regulate leaf transpiration and root potassium uptake in Arabidopsis. Plant J. 52: 223-239 (2007).

Cherel I, Michard E, Platet N, Mouline K, Alcon C, Sentenac H, Thibaud JB. Physical and functional interaction of the Arabidopsis K(+) channel AKT2 and phosphatase AtPP2CA. Plant Cell 14: 1133-1146 (2002).

Chern M, Canlas PE, Fitzgerald HA, Ronald PC. Rice NRR, a negative regulator of disease resistance, interacts with Arabidopsis NPR1 and rice NH1. Plant J. 43: 623-635 (2005).

Cheung AY, Chen CY, Tao LZ, Andreyeva T, Twell D, Wu HM. Regulation of pollen tube growth by Rac-like GTPases. J. Exp. Bot. 54: 73-81 (2003).

Cheung AY, Wu HM. Overexpression of an Arabidopsis formin stimulates supernumerary actin cable formation from pollen tube cell membrane. Plant Cell 16: 257-269 (2004).

Cheung MY, Zeng NY, Tong SW, Li FW, Zhao KJ, Zhang Q, Sun SS, Lam HM. Expression of a RING-HC protein from rice improves resistance to Pseudomonas syringae pv. tomato DC3000 in transgenic Arabidopsis thaliana. J. Exp. Bot. 58: 4147-4159 (2007).

Cheung MY, Zeng NY, Tong SW, Wing-Yen Li F, Zhao KJ, Zhang Q, Sai-Ming Sun S, Lam HM. Expression of a RING-HC protein from rice improves resistance to Pseudomonas syringae pv. tomato DC3000 in transgenic Arabidopsis thaliana. J. Exp. Bot. 59: 2903 (2008).

Chevalier C, Bourgeois E, Just D, Raymond P. Metabolic regulation of asparagine synthetase gene expression in maize (Zea mays L.) root tips. Plant J. 9: 1-11 (1996).

Chevalier F, Pata M, Nacry P, Doumas P, Rossignol M. Effects of phosphate availability on the root system architecture: large-scale analysis of the natural variation between Arabidopsis accessions. Plant Cell Environ. 26: 1839-1850 (2003).

Chevalier F, Rofidal V, Vanova P, Bergoin A, Rossignol M. Proteomic capacity of recent fluorescent dyes for protein staining. Phytochemistry 65: 1499-1506 (2004).

Chew O, Lister R, Qbadou S, Heazlewood JL, Soll J, Schleiff E, Millar AH, Whelan J. A plant outer mitochondrial membrane protein with high amino acid sequence identity to a chloroplast protein import receptor. FEBS Lett. 557: 109-114 (2004).

Chi WT, Fung RW, Liu HC, Hsu CC, Charng YY. Temperature-induced lipocalin is required for basal and acquired thermotolerance in Arabidopsis. Plant Cell Environ. 32: 917-927 (2009).

Chi-Ham CL, Keaton MA, Cannon GC, Heinhorst S. The DNA-compacting protein DCP68 from soybean chloroplasts is ferredoxin:sulfite reductase and co-localizes with the organellar nucleoid. Plant Mol. Biol. 49: 621-631 (2002).

Chia DW, Yoder TJ, Reiter WD, Gibson SI. Fumaric acid: an overlooked form of fixed carbon in Arabidopsis and other plant species. Planta 211: 743-751 (2000).

Chia T, Thorneycroft D, Chapple A, Messerli G, Chen J, Zeeman SC, Smith SM, Smith AM. A cytosolic glucosyltransferase is required for conversion of starch to sucrose in Arabidopsis leaves at night. Plant J. 37: 853-863 (2004).

Chiang H-H, Dandekar AM. Regulation of proline accumulation in Arabidopsis thaliana (L.) Heyhn during development and in response to desiccation. Plant Cell Environ. 18: 1280-1290 (1995).

Chiang HH, Hwang I, Goodman HM. Isolation of the Arabidopsis GA4 locus. Plant Cell 7: 195-201 (1995).

Chiang YJ, Stushnoff C, McSay AE. Overexpression of mannitol-1-phosphate dehydrogenase increases mannitol accumulation and adds protection against chilling injury in petunia. J. Am. Soc. Hortic. Sci. 130: 605-610 (2005).

Chiappetta A, De Witte W, Racchi ML, Bitonti MB, Van Onckelen H, Innocenti AM. Altered cytokinin distribution in the shootless maize mutant ed*41. Aust. J. Plant Physiol. 28: 307-313 (2001).

Chiba Y, Ishikawa M, Kijima F, Tyson RH, Kim J, Yamamoto A, Nambara E, Leustek T, Wallsgrove RM, Naito S. Evidence for autoregulation of cystathionine gamma-synthase mRNA stability in Arabidopsis. Science 286: 1371-1374 (1999).

Chiba Y, Sakurai R, Yoshino M, Ominato K, Ishikawa M, Onouchi H, Naito S. S-Adenosyl-L-methionine is an effector in the posttranscriptional autoregulation of the cystathionine gamma-synthase gene in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A. 100: 10225-10230 (2003).

Chibani K, Ali-Rachedi S, Job C, Job D, Jullien M, Grappin P. Proteomic analysis of seed dormancy in Arabidopsis. Plant Physiol. 142: 1493-1510 (2006).

Chien JC, Sussex IM. Differential regulation of trichome formation on the adaxial and abaxial leaf surfaces by gibberellins and photoperiod in Arabidopsis thaliana (L.) Heynh. Plant Physiol. 111: 1321-1328 (1996).

Chilley PM, Casson SA, Tarkowski P, Hawkins N, Wang KL, Hussey PJ, Beale M, Ecker JR, Sandberg GK, Lindsey K. The POLARIS peptide of Arabidopsis regulates auxin transport and root growth via effects on ethylene signaling. Plant Cell 18: 3058-3072 (2006).

Chinchilla D, Bauer Z, Regenass M, Boller T, Felix G. The Arabidopsis receptor kinase FLS2 binds flg22 and determines the specificity of flagellin perception. Plant Cell 18: 465-476 (2006).

Chini A, Fonseca S, Chico JM, Fernandez-Calvo P, Solano R. The ZIM domain mediates homo- and heteromeric interactions between Arabidopsis JAZ proteins. Plant J. 59: 77-87 (2009).

Chini A, Loake GJ. Motifs specific for the ADR1 NBS-LRR protein family in Arabidopsis are conserved among NBS-LRR sequences from both dicotyledonous and monocotyledonous plants. Planta 221: 597-601 (2005).

Chiou TJ, Aung K, Lin SI, Wu CC, Chiang SF, Su CL. Regulation of phosphate homeostasis by microRNA in Arabidopsis. Plant Cell 18: 412-421 (2006).

Chisholm ST, Parra MA, Anderberg RJ, Carrington JC. Arabidopsis RTM1 and RTM2 genes function in phloem to restrict long-distance movement of tobacco etch virus. Plant Physiol. 127: 1667-1675 (2001).

Chiu WH, Chandler J, Cnops G, Van Lijsebettens M, Werr W. Mutations in the TORNADO2 gene affect cellular decisions in the peripheral zone of the shoot apical meristem of Arabidopsis thaliana. Plant Mol. Biol. 63: 731-744 (2007).

Chivasa S, Hamilton JM, Pringle RS, Ndimba BK, Simon WJ, Lindsey K, Slabas AR. Proteomic analysis of differentially expressed proteins in fungal elicitor-treated Arabidopsis cell cultures. J. Exp. Bot. 57: 1553-1562 (2006).

Chivasa S, Ndimba BK, Simon WJ, Lindsey K, Slabas AR. Extracellular ATP functions as an endogenous external metabolite regulating plant cell viability. Plant Cell 17: 3019-3034 (2005).

Chiwocha SD, Cutler AJ, Abrams SR, Ambrose SJ, Yang J, Ross AR, Kermode AR. The etr1-2 mutation in Arabidopsis thaliana affects the abscisic acid, auxin, cytokinin and gibberellin metabolic pathways during maintenance of seed dormancy, moist-chilling and germination. Plant J. 42: 35-48 (2005).

Cho D, Kim SA, Murata Y, Lee S, Jae SK, Nam HG, Kwak JM. De-regulated expression of the plant glutamate receptor homolog AtGLR3.1 impairs long-term Ca2+-programmed stomatal closure. Plant J. 58: 437-449 (2009).

Cho HT, Cosgrove DJ. Regulation of root hair initiation and expansin gene expression in Arabidopsis. Plant Cell 14: 3237-3253 (2002).

Cho HY, Tseng TS, Kaiserli E, Sullivan S, Christie JM, Briggs WR. Physiological roles of the LOV domains of phototropin 1 and phototropin 2 in Arabidopsis. Plant Physiol. 143: 517-529 (2007).

Cho JI, Ryoo N, Eom JS, Lee DW, Kim HB, Jeong SW, Lee YH, Kwon YK, Cho MH, Bhoo SH, Hahn TR, Park YI, Hwang I, Sheen J, Jeon JS. Role of the rice hexokinases OsHXK5 and OsHXK6 as glucose sensors. Plant Physiol. 149: 745-759 (2009).

Cho M, Lee SH, Cho HT. P-glycoprotein4 displays auxin efflux transporter-like action in Arabidopsis root hair cells and tobacco cells. Plant Cell 19: 3930-3943 (2007).

Cho MH, Corea OR, Yang H, Bedgar DL, Laskar DD, Anterola AM, Moog-Anterola FA, Hood RL, Kohalmi SE, Bernards MA, Kang C, Davin LB, Lewis NG. Phenylalanine biosynthesis in Arabidopsis thaliana: identification and characterization of arogenate dehydratases. J. Biol. Chem. 282: 30827-30835 (2007).

Cho S, Jang S, Chae S, Chung KM, Moon YH, An G, Jang SK. Analysis of the C-terminal region of Arabidopsis thaliana APETALA1 as a transcription activation domain. Plant Mol. Biol. 40: 419-429 (1999).

Cho SK, Chung HS, Ryu MY, Park MJ, Lee MM, Bahk YY, Kim J, Pai HS, Kim WT. Heterologous expression and molecular and cellular characterization of CaPUB1 encoding a hot pepper U-box E3 ubiquitin ligase homolog. Plant Physiol. 142: 1664-1682 (2006).

Cho SK, Ryu MY, Song C, Kwak JM, Kim WT. Arabidopsis PUB22 and PUB23 are homologous U-box E3 ubiquitin ligases that play combinatory roles in response to drought stress. Plant Cell 20: 1899-1914 (2008).

Cho WK, Chen XY, Chu H, Rim Y, Kim S, Kim ST, Kim SW, Park ZY, Kim JY. Proteomic analysis of the secretome of rice calli. Physiol. Plant. 135: 331-341 (2009).

Cho Y, Walbot V. Computational methods for gene annotation: the Arabidopsis genome. Curr. Opin. Biotechnol. 12: 126-130 (2001).

Cho YH, Yoo SD. ETHYLENE RESPONSE 1 histidine kinase activity of Arabidopsis promotes plant growth. Plant Physiol. 143: 612-616 (2007).

Choe S, Dilkes BP, Fujioka S, Takatsuto S, Sakurai A, Feldmann KA. The DWF4 gene of Arabidopsis encodes a cytochrome P450 that mediates multiple 22alpha-hydroxylation steps in brassinosteroid biosynthesis. Plant Cell 10: 231-243 (1998).

Choe S, Dilkes BP, Gregory BD, Ross AS, Yuan H, Noguchi T, Fujioka S, Takatsuto S, Tanaka A, Toshida S, Tax FE, Feldmann KA. The Arabidopsis dwarf1 mutant is defective in the conversion of 24-methylenecholesterol to campesterol in brassinosteroid biosynthesis. Plant Physiol. 119: 897-907 (1999).

Choe S, Noguchi T, Fujioka S, Takatsuto S, Tissier CP, Gregory BD, Ross AS, Tanaka A, Yoshida S, Tax FE, Feldmann KA. The Arabidopsis dwf7/ste1 mutant is defective in the delta7 sterol C-5 desaturation step leading to brassinosteroid biosynthesis. Plant Cell 11: 207-221 (1999).

Choe S, Schmitz RJ, Fujioka S, Takatsuto S, Lee MO, Yoshida S, Feldmann KA, Tax FE. Arabidopsis brassinosteroid-insensitive dwarf12 mutants are semidominant and defective in a glycogen synthase kinase 3beta-like kinase. Plant Physiol. 130: 1506-1515 (2002).

Choi DW, Rodriguez EM, Close TJ. Barley cbf3 gene identification, expression pattern, and map location. Plant Physiol. 129: 1781-1787 (2002).

Choi HI, Park HJ, Park JH, Kim S, Im MY, Seo HH, Kim YW, Hwang I, Kim SY. Arabidopsis calcium-dependent protein kinase AtCPK32 interacts with ABF4, a transcriptional regulator of abscisic acid-responsive gene expression, and modulates its activity. Plant Physiol. 139: 1750-1761 (2005).

Choi HW, Lee BG, Kim NH, Park Y, Lim CW, Song HK, Hwang BK. A role for a menthone reductase in resistance against microbial pathogens in plants. Plant Physiol. 148: 383-401 (2008).

Choi J, Hyun Y, Kang MJ, In Yun H, Yun JY, Lister C, Dean C, Amasino RM, Noh B, Noh YS, Choi Y. Resetting and regulation of Flowering Locus C expression during Arabidopsis reproductive development. Plant J. 57: 918-931 (2009).

Choi JD, Hoshino A, Park KI, Park IS, Iida S. Spontaneous mutations caused by a Helitron transposon, Hel-It1, in morning glory, Ipomoea tricolor. Plant J. 49: 924-934 (2007).

Choi JK, Yu F, Wurtele ES, Nikolau BJ. Molecular cloning and characterization of the cDNA coding for the biotin-containing subunit of the chloroplastic acetyl-coenzyme A carboxylase. Plant Physiol. 109: 619-625 (1995).

Choi K, Kim S, Kim SY, Kim M, Hyun Y, Lee H, Choe S, Kim SG, Michaels S, Lee I. SUPPRESSOR OF FRIGIDA3 encodes a ACTIN-RELATED PROTEIN6 required for floral repression in Arabidopsis. Plant Cell 17: 2647-2660 (2005).

Chono M, Honda I, Zeniya H, Yoneyama K, Saisho D, Takeda K, Takatsuto S, Hoshino T, Watanabe Y. A semidwarf phenotype of barley uzu results from a nucleotide substitution in the gene encoding a putative brassinosteroid receptor. Plant Physiol. 133: 1209-1219 (2003).

Chopin F, Orsel M, Dorbe MF, Chardon F, Truong HN, Miller AJ, Krapp A, Daniel-Vedele F. The Arabidopsis ATNRT2.7 nitrate transporter controls nitrate content in seeds. Plant Cell 19: 1590-1602 (2007).

Chory J, Peto CA, Ashbaugh M, Saganich R, Pratt L, Ausubel F. Different roles for phytochrome in etiolated and green plants deduced from characterization of Arabidopsis thaliana mutants. Plant Cell 1: 867-880 (1989).

Choudhary NL, Sairam RK, Tyagi A. Expression of delta1-pyrroline-5-carboxylate synthetase gene during drought in rice (Oryza sativa L ). Indian J. Biochem. Biophys. 42: 366-370 (2005).

Choy MK, Sullivan JA, Theobald JC, Davies WJ, Gray JC. An Arabidopsis mutant able to green after extended dark periods shows decreased transcripts of seed protein genes and altered sensitivity to abscisic acid. J. Exp. Bot. 59: 3869-3884 (2008).

Chrispeels HE, Oettinger H, Janvier N, Tague BW. AtZFP1, encoding Arabidopsis thaliana C2H2 zinc-finger protein 1, is expressed downstream of photomorphogenic activation. Plant Mol. Biol. 42: 279-290 (2000).

Christensen A, Svensson K, Persson S, Jung J, Michalak M, Widell S, Sommarin M. Functional characterization of Arabidopsis calreticulin1a: a key alleviator of endoplasmic reticulum stress. Plant Cell Physiol. 49: 912-924 (2008).

Christensen AC, Lyznik A, Mohammed S, Elowsky CG, Elo A, Yule R, Mackenzie SA. Dual-domain, dual-targeting organellar protein presequences in Arabidopsis can use non-AUG start codons. Plant Cell 17: 2805-2816 (2005).

Christensen CA, Gorsich SW, Brown RH, Jones LG, Brown J, Shaw JM, Drews GN. Mitochondrial GFA2 is required for synergid cell death in Arabidopsis. Plant Cell 14: 2215-2232 (2002).

Christensen SK, Dagenais N, Chory J, Weigel D. Regulation of auxin response by the protein kinase PINOID. Cell 100: 469-478 (2000).

Christian M, Hannah WB, Lüthen H, Jones AM. Identification of auxins by a chemical genomics approach. J. Exp. Bot. 59: 2757-2767 (2008).

Christians MJ, Gingerich DJ, Hansen M, Binder BM, Kieber JJ, Vierstra RD. The BTB ubiquitin ligases ETO1, EOL1 and EOL2 act collectively to regulate ethylene biosynthesis in Arabidopsis by controlling type-2 ACC synthase levels. Plant J. 57: 332-345 (2009).

Christians MJ, Larsen PB. Mutational loss of the prohibitin AtPHB3 results in an extreme constitutive ethylene response phenotype coupled with partial loss of ethylene-inducible gene expression in Arabidopsis seedlings. J. Exp. Bot. 58: 2237-2248 (2007).

Christians MJ, Robles LM, Zeller SM, Larsen PB. The eer5 mutation, which affects a novel proteasome-related subunit, indicates a prominent role for the COP9 signalosome in resetting the ethylene-signaling pathway in Arabidopsis. Plant J. 55: 467-477 (2008).

Christiansen LC, Dal Degan F, Ulvskov P, Borkhardt B. Examination of the dehiscence zone in soybean pods and isolation of a dehiscence-related endopolygalacturonase gene. Plant Cell Environ. 25: 479-490 (2002).

Christianson JA, Wilson IW, Llewellyn DJ, Dennis ES. The low-oxygen-induced NAC domain transcription factor ANAC102 affects viability of Arabidopsis seeds following low-oxygen treatment. Plant Physiol. 149: 1724-1738 (2009).

Christie JM. Phototropin blue-light receptors. Annu. Rev. Plant Biol. 58: 21-45 (2007).

Christie JM, Swartz TE, Bogomolni RA, Briggs WR. Phototropin LOV domains exhibit distinct roles in regulating photoreceptor function. Plant J. 32: 205-219 (2002).

Christman MA, Donovan LA, Richards JH. Magnitude of nighttime transpiration does not affect plant growth or nutrition in well-watered Arabidopsis. Physiol. Plant. 136: 264-273 (2009).

Christman MA, Richards JH, McKay JK, Stahl EA, Juenger TE, Donovan LA. Genetic variation in Arabidopsis thaliana for nighttime leaf conductance. Plant Cell Environ. 31: 1170-1178 (2008).

Christmann A, Hoffmann T, Teplova I, Grill E, Muller A. Generation of active pools of abscisic acid revealed by in vivo imaging of water-stressed Arabidopsis. Plant Physiol. 137: 209-219 (2005).

Chronis D, Krishnan HB. Sulfur assimilation in soybean (Glycine max [L.] Merr.): molecular cloning and characterization of a cytosolic isoform of serine acetyltransferase. Planta 218: 417-426 (2004).

Chrost B, Kolukisaoglu U, Schulz B, Krupinska K. An alpha-galactosidase with an essential function during leaf development. Planta 225: 311-320 (2007).

Chu B, Lindstrom JT, Belanger FC. Arabidopsis thaliana expresses three divergent Srp54 genes. Plant Physiol. 106: 1157-1162 (1994).

Chu B, Snustad DP, Carter JV. Alteration of [beta]-tubulin gene expression during low-temperature exposure in leaves of Arabidopsis thaliana. Plant Physiol. 103: 371-377 (1993).

Chu CC, Lee WC, Guo WY, Pan SM, Chen LJ, Li HM, Jinn TL. A copper chaperone for superoxide dismutase that confers three types of copper/zinc superoxide dismutase activity in Arabidopsis. Plant Physiol. 139: 425-436 (2005).

Chu H, Qian Q, Liang W, Yin C, Tan H, Yao X, Yuan Z, Yang J, Huang H, Luo D, Ma H, Zhang D. The FLORAL ORGAN NUMBER4 gene encoding a putative ortholog of Arabidopsis CLAVATA3 regulates apical meristem size in rice. Plant Physiol. 142: 1039-1052 (2006).

Chu Z, Chen H, Zhang Y, Zhang Z, Zheng N, Yin B, Yan H, Zhu L, Zhao X, Yuan M, Zhang X, Xie Q. Knockout of the AtCESA2 gene affects microtubule orientation and causes abnormal cell expansion in Arabidopsis. Plant Physiol. 143: 213-224 (2007).

Chuang HW, Zhang W, Gray WM. Arabidopsis ETA2, an apparent ortholog of the human cullin-interacting protein CAND1, is required for auxin responses mediated by the SCF(TIR1) ubiquitin ligase. Plant Cell 16: 1883-1897 (2004).

Chung H-J, Sehnke PC, Ferl RJ. The 14-3-3 proteins: cellular regulators of plant metabolism. Trends Plant Sci. 4: 367-371 (1999).

Chung HJ, Ferl RJ. Arabidopsis alcohol dehydrogenase expression in both shoots and roots is conditioned by root growth environment. Plant Physiol. 121: 429-436 (1999).

Chung HS, Howe GA. A critical role for the TIFY motif in repression of jasmonate signaling by a stabilized splice variant of the JASMONATE ZIM-domain protein JAZ10 in Arabidopsis. Plant Cell 21: 131-145 (2009).

Chung JS, Zhu JK, Bressan RA, Hasegawa PM, Shi H. Reactive oxygen species mediate Na+-induced SOS1 mRNA stability in Arabidopsis. Plant J. 53: 554-565 (2008).

Chung KJ, Hwang SK, Hahn BS, Kim KH, Kim JB, Kim YH, Yang JS, Ha SH. Authentic seed-specific activity of the Perilla oleosin 19 gene promoter in transgenic Arabidopsis. Plant Cell Rep. 27: 29-37 (2008).

Chung S, Parish RW. Combinatorial interactions of multiple cis-elements regulating the induction of the Arabidopsis XERO2 dehydrin gene by abscisic acid and cold. Plant J. 54: 15-29 (2008).

Chung T, Suttangkakul A, Vierstra RD. The ATG autophagic conjugation system in maize: ATG transcripts and abundance of the ATG8-lipid adduct are regulated by development and nutrient availability. Plant Physiol. 149: 220-234 (2009).

Churchman ML, Brown ML, Kato N, Kirik V, Hulskamp M, Inze D, De Veylder L, Walker JD, Zheng Z, Oppenheimer DG, Gwin T, Churchman J, Larkin JC. SIAMESE, a plant-specific cell cycle regulator, controls endoreplication onset in Arabidopsis thaliana. Plant Cell 18: 3145-3157 (2006).

Chye ML. Arabidopsis cDNA encoding a membrane-associated protein with an acyl-CoA binding domain. Plant Mol. Biol. 38: 827-838 (1998).

Chye ML, Huang BQ, Zee SY. Isolation of a gene encoding Arabidopsis membrane-associated acyl-CoA binding protein and immunolocalization of its gene product. Plant J. 18: 205-214 (1999).

Chye ML, Li HY, Yung MH. Single amino acid substitutions at the acyl-CoA-binding domain interrupt 14[C]palmitoyl-CoA binding of ACBP2, an Arabidopsis acyl-CoA-binding protein with ankyrin repeats. Plant Mol. Biol. 44: 711-721 (2000).

Ciannamea S, Kaufmann K, Frau M, Tonaco IA, Petersen K, Nielsen KK, Angenent GC, Immink RG. Protein interactions of MADS box transcription factors involved in flowering in Lolium perenne. J. Exp. Bot. 57: 3419-3431 (2006).

Ciarbelli AR, Ciolfi A, Salvucci S, Ruzza V, Possenti M, Carabelli M, Fruscalzo A, Sessa G, Morelli G, Ruberti I. The Arabidopsis homeodomain-leucine zipper II gene family: diversity and redundancy. Plant Mol. Biol. 68: 465-478 (2008).

Ciereszko I, Johansson H, Hurry V, Kleczkowski LA. Phosphate status affects the gene expression, protein content and enzymatic activity of UDP-glucose pyrophosphorylase in wild-type and pho mutants of Arabidopsis. Planta 212: 598-605 (2001).

Ciereszko I, Johansson H, Kleczkowski LA. Sucrose and light regulation of a cold-inducible UDP-glucose pyrophosphorylase gene via a hexokinase-independent and abscisic acid-insensitive pathway in Arabidopsis. Biochem. J. 354: 67-72 (2001).

Cinege G, Louis S, Hansch R, Schnitzler JP. Regulation of isoprene synthase promoter by environmental and internal factors. Plant Mol. Biol. 69: 593-604 (2009).

Ciolkowski I, Wanke D, Birkenbihl RP, Somssich IE. Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function. Plant Mol. Biol. 68: 81-92 (2008).

Citerne HL, Luo D, Pennington RT, Coen E, Cronk QC. A phylogenomic investigation of CYCLOIDEA-like TCP genes in the Leguminosae. Plant Physiol. 131: 1042-1053 (2003).

Ckurshumova W, Koizumi K, Chatfield SP, Sanchez-Buelna SU, Gangaeva AE, Berleth T. Tissue-specific GAL4 expression patterns as a resource enabling targeted gene expression, cell type specific transcript profiling and gene function characterization in the Arabidopsis vascular system. Plant Cell Physiol. 50: 141-150 (2009).

Clack T, Shokry A, Moffet M, Liu P, Faul M, Sharrock RA. Obligate heterodimerization of Arabidopsis phytochromes C and E and interaction with the PIF3 basic helix-loop-helix transcription factor. Plant Cell 21: 786-799 (2009).

Claisse G, Charrier B, Kreis M. The Arabidopsis thaliana GSK3/Shaggy like kinase AtSK3-2 modulates floral cell expansion. Plant Mol. Biol. 64: 113-124 (2007).

Clark GB, Lee D, Dauwalder M, Roux SJ. Immunolocalization and histochemical evidence for the association of two different Arabidopsis annexins with secretion during early seedling growth and development. Planta 220: 621-631 (2005).

Clark SE, Williams RW, Meyerowitz EM. The CLAVATA1 gene encodes a putative receptor kinase that controls shoot and floral meristem size in Arabidopsis. Cell 89: 575-585 (1997).

Clark SM, Di Leo R, Dhanoa PK, Van Cauwenberghe OR, Mullen RT, Shelp BJ. Biochemical characterization, mitochondrial localization, expression, and potential functions for an Arabidopsis gamma-aminobutyrate transaminase that utilizes both pyruvate and glyoxylate. J. Exp. Bot. 60: 1743-1757 (2009).

Clarke A, Desikan R, Hurst RD, Hancock JT, Neill SJ. NO way back: nitric oxide and programmed cell death in Arabidopsis thaliana suspension cultures. Plant J. 24: 667-677 (2000).

Clarke AK, MacDonald TM, Sjogren LLE. The ATP-dependent Clp protease in chloroplasts of higher plants. Physiol. Plant. 123: 406-412 (2005).

Clarke JD, Liu Y, Klessig DF, Dong X. Uncoupling PR gene expression from NPR1 and bacterial resistance: characterization of the dominant Arabidopsis cpr6-1 mutant. Plant Cell 10: 557-569 (1998).

Clarke SM, Mur LA, Wood JE, Scott IM. Salicylic acid dependent signaling promotes basal thermotolerance but is not essential for acquired thermotolerance in Arabidopsis thaliana. Plant J. 38: 432-447 (2004).

Clauss K, Baumert A, Nimtz M, Milkowski C, Strack D. Role of a GDSL lipase-like protein as sinapine esterase in Brassicaceae. Plant J. 53: 802-813 (2008).

Clauss MJ, Koch MA. Poorly known relatives of Arabidopsis thaliana. Trends Plant Sci. 11: 449-459 (2006).

Clay NK, Nelson T. The recessive epigenetic swellmap mutation affects the expression of two step II splicing factors required for the transcription of the cell proliferation gene STRUWWELPETER and for the timing of cell cycle arrest in the Arabidopsis leaf. Plant Cell 17: 1994-2008 (2005).

Clay NK, Nelson T. Arabidopsis thickvein mutation affects vein thickness and organ vascularization, and resides in a provascular cell-specific spermine synthase involved in vein definition and in polar auxin transport. Plant Physiol. 138: 767-777 (2005).

Clay NK, Nelson T. VH1, a provascular cell-specific receptor kinase that influences leaf cell patterns in Arabidopsis. Plant Cell 14: 2707-2722 (2002).

Clayton H, Knight MR, Knight H, McAinsh MR, Hetherington AM. Dissection of the ozone-induced calcium signature. Plant J. 17: 575-579 (1999).

Clemens S. Molecular mechanisms of plant metal tolerance and homeostasis. Planta 212: 475-486 (2001).

Clemens S, Kim EJ, Neumann D, Schroeder JI. Tolerance to toxic metals by a gene family of phytochelatin synthases from plants and yeast. EMBO J. 18: 3325-3333 (1999).

Clemens S, Schroeder JI, Degenkolb T. Caenorhabditis elegans expresses a functional phytochelatin synthase. Eur. J. Biochem. 268: 3640-3643 (2001).

Clerkx EJ, El-Lithy ME, Vierling E, Ruys GJ, Blankestijn-De Vries H, Groot SP, Vreugdenhil D, Koornneef M. Analysis of natural allelic variation of Arabidopsis seed germination and seed longevity traits between the accessions Landsberg erecta and Shakdara, using a new recombinant inbred line population. Plant Physiol. 135: 432-443 (2004).

Clerkx EJ, Vries HB, Ruys GJ, Groot SP, Koornneef M. Characterization of green seed, an enhancer of abi3-1 in Arabidopsis that affects seed longevity. Plant Physiol. 132: 1077-1084 (2003).

Clerkx EJM, Blankestijn-De Vries H, Ruys GJ, Groot SPC, Koornneef M. Genetic differences in seed longevity of various Arabidopsis mutants. Physiol. Plant. 121: 448-461 (2004).

Clifton R, Lister R, Parker KL, Sappl PG, Elhafez D, Millar AH, Day DA, Whelan J. Stress-induced co-expression of alternative respiratory chain components in Arabidopsis thaliana. Plant Mol. Biol. 58: 193-212 (2005).

Cline MG, Oh C. A reappraisal of the role of abscisic acid and its interaction with auxin in apical dominance. Ann. Bot. (Lond.) 98: 891-897 (2006).

Cloix C, Yukawa Y, Tutois S, Sugiura M, Tourmente S. In vitro analysis of the sequences required for transcription of the Arabidopsis thaliana 5S rRNA genes. Plant J. 35: 251-261 (2003).

Clore AM, Turner WS, Morse AM, Whetten RW. Changes in mitogen-activated protein kinase activity occur in the maize pulvinus in response to gravistimulation and are important for the bending response. Plant Cell Environ. 26: 991-1001 (2003).

Clouse SD. Plant hormones: brassinosteroids in the spotlight. Curr. Biol. 6: 658-661 (1996).

Clouse SD. Arabidopsis mutants reveal multiple roles for sterols in plant development. Plant Cell 14: 1995-2000 (2002).

Clouse SD, Langford M, McMorris TC. A brassinosteroid-insensitive mutant in Arabidopsis thaliana exhibits multiple defects in growth and development. Plant Physiol. 111: 671-678 (1996).

Cluis CP, Mouchel CF, Hardtke CS. The Arabidopsis transcription factor HY5 integrates light and hormone signaling pathways. Plant J. 38: 332-347 (2004).

Cnops G, Jover-Gil S, Peters JL, Neyt P, De Block S, Robles P, Ponce MR, Gerats T, Micol JL, Van Lijsebettens M. The rotunda2 mutants identify a role for the LEUNIG gene in vegetative leaf morphogenesis. J. Exp. Bot. 55: 1529-1539 (2004).

Cnops G, Neyt P, Raes J, Petrarulo M, Nelissen H, Malenica N, Luschnig C, Tietz O, Ditengou F, Palme K, Azmi A, Prinsen E, Van Lijsebettens M. The TORNADO1 and TORNADO2 genes function in several patterning processes during early leaf development in Arabidopsis thaliana. Plant Cell 18: 852-866 (2006).

Coates JC, Laplaze L, Haseloff J. Armadillo-related proteins promote lateral root development in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A. 103: 1621-1626 (2006).

Cobbett C, Goldsbrough P. Phytochelatins and metallothioneins: roles in heavy metal detoxification and homeostasis. Annu. Rev. Plant Biol. 53: 159-182 (2002).

Cobbett CS. A family of phytochelatin synthase genes from plant, fungal and animal species. Trends Plant Sci. 4: 335-337 (1999).

Cobbett CS. Heavy metal detoxification in plants: phytochelatin biosynthesis and function. IUBMB Life 51: 183-188 (2001).

Cochrane FC, Davin LB, Lewis NG. The Arabidopsis phenylalanine ammonia lyase gene family: kinetic characterization of the four PAL isoforms. Phytochemistry 65: 1557-1564 (2004).

Coego A, Ramirez V, Ellul P, Mayda E, Vera P. The H2O2-regulated Ep5C gene encodes a peroxidase required for bacterial speck susceptibility in tomato. Plant J. 42: 283-293 (2005).

Coego A, Ramirez V, Gil MJ, Flors V, Mauch-Mani B, Vera P. An Arabidopsis homeodomain transcription factor, OVEREXPRESSOR OF CATIONIC PEROXIDASE 3, mediates resistance to infection by necrotrophic pathogens. Plant Cell 17: 2123-2137 (2005).

Coelho CM, Dante RA, Sabelli PA, Sun Y, Dilkes BP, Gordon-Kamm WJ, Larkins BA. Cyclin-dependent kinase inhibitors in maize endosperm and their potential role in endoreduplication. Plant Physiol. 138: 2323-2336 (2005).

Coen ES, Meyerowitz EM. The war of the whorls: genetic interactions controlling flower development. Nature 353: 31-37 (1991).

Cohen CK, Garvin DF, Kochian LV. Kinetic properties of a micronutrient transporter from Pisum sativum indicate a primary function in Fe uptake from the soil. Planta 218: 784-792 (2004).

Cohen JD, Slovin JP, Hendrickson AM. Two genetically discrete pathways convert tryptophan to auxin: more redundancy in auxin biosynthesis. Trends Plant Sci. 8: 197-199 (2003).

Cohen S, Houben A, Segal D. Extrachromosomal circular DNA derived from tandemly repeated genomic sequences in plants. Plant J. 53: 1027-1034 (2008).

Coimbra S, Almeida J, Junqueira V, Costa ML, Pereira LG. Arabinogalactan proteins as molecular markers in Arabidopsis thaliana sexual reproduction. J. Exp. Bot. 58: 4027-4035 (2007).

Coker JS, Vian A, Davies E. Identification, accumulation, and functional prediction of novel tomato transcripts systemically upregulated after fire damage. Physiol. Plant. 124: 311-322 (2005).

Colangelo EP, Guerinot ML. The essential basic helix-loop-helix protein FIT1 is required for the iron deficiency response. Plant Cell 16: 3400-3412 (2004).

Colby T, Matthai A, Boeckelmann A, Stuible HP. SUMO-conjugating and SUMO-deconjugating enzymes from Arabidopsis. Plant Physiol. 142: 318-332 (2006).

Colcombet J, Boisson-Dernier A, Ros-Palau R, Vera CE, Schroeder JI. Arabidopsis SOMATIC EMBRYOGENESIS RECEPTOR KINASES1 and 2 are essential for tapetum development and microspore maturation. Plant Cell 17: 3350-3361 (2005).

Colcombet J, Lelievre F, Thomine S, Barbier-Brygoo H, Frachisse JM. Distinct pH regulation of slow and rapid anion channels at the plasma membrane of Arabidopsis thaliana hypocotyl cells. J. Exp. Bot. 56: 1897-1903 (2005).

Cole RA, Synek L, Zarsky V, Fowler JE. SEC8, a subunit of the putative Arabidopsis exocyst complex, facilitates pollen germination and competitive pollen tube growth. Plant Physiol. 138: 2005-2018 (2005).

Coles JP, Phillips AL, Croker SJ, Garcia-Lepe R, Lewis MJ, Hedden P. Modification of gibberellin production and plant development in Arabidopsis by sense and antisense expression of gibberellin 20-oxidase genes. Plant J. 17: 547-556 (1999).

Colinas J, Birnbaum K, Benfey PN. Using cauliflower to find conserved non-coding regions in Arabidopsis. Plant Physiol. 129: 451-454 (2002).

Coll NS, Danon A, Meurer J, Cho WK, Apel K. Characterization of soldat8, a suppressor of singlet oxygen-induced cell death in Arabidopsis seedlings. Plant Cell Physiol. 50: 707-718 (2009).

Collakova E, DellaPenna D. Isolation and functional analysis of homogentisate phytyltransferase from Synechocystis sp. PCC 6803 and Arabidopsis. Plant Physiol. 127: 1113-1124 (2001).

Collakova E, DellaPenna D. Homogentisate phytyltransferase activity is limiting for tocopherol biosynthesis in Arabidopsis. Plant Physiol. 131: 632-642 (2003).

Collakova E, DellaPenna D. The role of homogentisate phytyltransferase and other tocopherol pathway enzymes in the regulation of tocopherol synthesis during abiotic stress. Plant Physiol. 133: 930-940 (2003).

Collakova E, Goyer A, Naponelli V, Krassovskaya I, Gregory JF 3rd, Hanson AD, Shachar-Hill Y. Arabidopsis 10-formyl tetrahydrofolate deformylases are essential for photorespiration. Plant Cell 20: 1818-1832 (2008).

Collett CE, Harberd NP, Leyser O. Hormonal interactions in the control of Arabidopsis hypocotyl elongation. Plant Physiol. 124: 553-562 (2000).

Collett H, Shen A, Gardner M, Farrant JM, Denby KJ, Illing N. Towards transcript profiling of desiccation tolerance in Xerophyta humilis: Construction of a normalized 11 k X. humilis cDNA set and microarray expression analysis of 424 cDNAs in response to dehydration. Physiol. Plant. 122: 39-53 (2004).

Collette VE, Jameson PE, Schwinn KE, Umaharan P, Davies KM. Temporal and spatial expression of flavonoid biosynthetic genes in flowers of Anthurium andraeanum. Physiol. Plant. 122: 297-304 (2004).

Collin S, Justin AM, Cantrel C, Arondel V, Kader JC. Identification of AtPIS, a phosphatidylinositol synthase from Arabidopsis. Eur. J. Biochem. 262: 652-658 (1999).

Collin V, Lamkemeyer P, Miginiac-Maslow M, Hirasawa M, Knaff DB, Dietz KJ, Issakidis-Bourguet E. Characterization of plastidial thioredoxins from Arabidopsis belonging to the new y-type. Plant Physiol. 136: 4088-4095 (2004).

Collinge MA, Spillane C, Kohler C, Gheyselinck J, Grossniklaus U. Genetic interaction of an origin recognition complex subunit and the Polycomb group gene MEDEA during seed development. Plant Cell 16: 1035-1046 (2004).

Collings DA, Gebbie LK, Howles PA, Hurley UA, Birch RJ, Cork AH, Hocart CH, Arioli T, Williamson RE. Arabidopsis dynamin-like protein DRP1A: a null mutant with widespread defects in endocytosis, cellulose synthesis, cytokinesis, and cell expansion. J. Exp. Bot. 59: 361-376 (2008).

Collings DA, Harper JD, Vaughn KC. The association of peroxisomes with the developing cell plate in dividing onion root cells depends on actin microfilaments and myosin. Planta 218: 204-216 (2003).

Colmenero-Flores JM, Martinez G, Gamba G, Vazquez N, Iglesias DJ, Brumos J, Talon M. Identification and functional characterization of cation-chloride cotransporters in plants. Plant J. 50: 278-292 (2007).

Colombo L, Battaglia R, Kater MM. Arabidopsis ovule development and its evolutionary conservation. Trends Plant Sci. 13: 444-450 (2008).

Colombo M, Masiero S, Vanzulli S, Lardelli P, Kater MM, Colombo L. AGL23, a type I MADS-box gene that controls female gametophyte and embryo development in Arabidopsis. Plant J. 54: 1037-1048 (2008).

Colon-Carmona A, Chen DL, Yeh KC, Abel S. Aux/IAA proteins are phosphorylated by phytochrome in vitro. Plant Physiol. 124: 1728-1738 (2000).

Colville L, Smirnoff N. Antioxidant status, peroxidase activity, and PR protein transcript levels in ascorbate-deficient Arabidopsis thaliana vtc mutants. J. Exp. Bot. 59: 3857-3868 (2008).

Comai L. Genetic and epigenetic interactions in allopolyploid plants. Plant Mol. Biol. 43: 387-399 (2000).

Comella P, Wu HJ, Laudie M, Berger C, Cooke R, Delseny M, Grellet F. Fine sequence analysis of 60 kb around the Arabidopsis thaliana AtEm1 locus on chromosome III. Plant Mol. Biol. 41: 687-700 (1999).

Comelli RN, Viola IL, Gonzalez DH. Characterization of promoter elements required for expression and induction by sucrose of the Arabidopsis COX5b-1 nuclear gene, encoding the zinc-binding subunit of cytochrome c oxidase. Plant Mol. Biol. 69: 729-743 (2009).

Cominelli E, Galbiati M, Vavasseur A, Conti L, Sala T, Vuylsteke M, Leonhardt N, Dellaporta SL, Tonelli C. A guard-cell-specific MYB transcription factor regulates stomatal movements and plant drought tolerance. Curr. Biol. 15: 1196-1200 (2005).

Cominelli E, Sala T, Calvi D, Gusmaroli G, Tonelli C. Over-expression of the Arabidopsis AtMYB41 gene alters cell expansion and leaf surface permeability. Plant J. 53: 53-64 (2008).

Conklin PL. Recent advances in the role and biosynthesis of ascorbic acid in plants. Plant Cell Environ. 24: 383-394 (2001).

Conklin PL, Barth C. Ascorbic acid, a familiar small molecule intertwined in the response of plants to ozone, pathogens, and the onset of senescence. Plant Cell Environ. 27: 959-970 (2004).

Conklin PL, Last RL. Differential accumulation of antioxidant mRNAs in Arabidopsis thaliana exposed to ozone. Plant Physiol. 109: 203-212 (1995).

Conklin PL, Pallanca JE, Last RL, Smirnoff N. L-ascorbic acid metabolism in the ascorbate-deficient Arabidopsis mutant vtc1. Plant Physiol. 115: 1277-1285 (1997).

Conley TR, Peng HP, Shih MC. Mutations affecting induction of glycolytic and fermentative genes during germination and environmental stresses in Arabidopsis. Plant Physiol. 119: 599-608 (1999).

Conley TR, Shih MC. Effects of light and chloroplast functional state on expression of nuclear genes encoding chloroplast glyceraldehyde-3-phosphate dehydrogenase in long hypocotyl (hy) mutants and wild-type Arabidopsis thaliana. Plant Physiol. 108: 1013-1022 (1995).

Conner JA, Conner P, Nasrallah ME, Nasrallah JB. Comparative mapping of the Brassica S locus region and its homeolog in Arabidopsis. Implications for the evolution of mating systems in the Brassicaceae. Plant Cell 10: 801-812 (1998).

Connolly EL, Campbell NH, Grotz N, Prichard CL, Guerinot ML. Overexpression of the FRO2 ferric chelate reductase confers tolerance to growth on low iron and uncovers posttranscriptional control. Plant Physiol. 133: 1102-1110 (2003).

Connolly EL, Fett JP, Guerinot ML. Expression of the IRT1 metal transporter is controlled by metals at the levels of transcript and protein accumulation. Plant Cell 14: 1347-1357 (2002).

Constan D, Froehlich JE, Rangarajan S, Keegstra K. A stromal Hsp100 protein is required for normal chloroplast development and function in Arabidopsis. Plant Physiol. 136: 3605-3615 (2004).

Constan D, Patel R, Keegstra K, Jarvis P. An outer envelope membrane component of the plastid protein import apparatus plays an essential role in Arabidopsis. Plant J. 38: 93-106 (2004).

Constantin GD, Krath BN, Macfarlane SA, Nicolaisen M, Elisabeth Johansen I, Lund OS. Virus-induced gene silencing as a tool for functional genomics in a legume species. Plant J. 40: 622-631 (2004).

Contento AL, Kim SJ, Bassham DC. Transcriptome profiling of the response of Arabidopsis suspension culture cells to Suc starvation. Plant Physiol. 135: 2330-2347 (2004).

Contento AL, Xiong Y, Bassham DC. Visualization of autophagy in Arabidopsis using the fluorescent dye monodansylcadaverine and a GFP-AtATG8e fusion protein. Plant J. 42: 598-608 (2005).

Conti L, Bradley D. TERMINAL FLOWER1 is a mobile signal controlling Arabidopsis architecture. Plant Cell 19: 767-778 (2007).

Conti L, Price G, O'Donnell E, Schwessinger B, Dominy P, Sadanandom A. Small ubiquitin-like modifier proteases OVERLY TOLERANT TO SALT1 and -2 regulate salt stress responses in Arabidopsis. Plant Cell 20: 2894-2908 (2008).

Contreras-Cornejo HA, Macías-Rodriguez L, Cortes-Penagos C, Lopez-Bucio J. Trichoderma virens, a plant beneficial fungus, enhances biomass production and promotes lateral root growth through an auxin-dependent mechanism in Arabidopsis. Plant Physiol. 149: 1579-1592 (2009).

Cook D, Fowler S, Fiehn O, Thomashow MF. A prominent role for the CBF cold response pathway in configuring the low-temperature metabolome of Arabidopsis. Proc. Natl. Acad. Sci. U.S.A. 101: 15243-15248 (2004).

Cooke JEK, Brown KA, Wu R, Davis JM. Gene expression associated with N-induced shifts in resource allocation in poplar. Plant Cell Environ. 26: 757-770 (2003).

Cookson SJ, Chenu K, Granier C. Day length affects the dynamics of leaf expansion and cellular development in Arabidopsis thaliana partially through floral transition timing. Ann. Bot. (Lond.) 99: 703-711 (2007).

Cookson SJ, Granier C. A dynamic analysis of the shade-induced plasticity in Arabidopsis thaliana rosette leaf development reveals new components of the shade-adaptative response. Ann. Bot. (Lond.) 97: 443-452 (2006).

Cookson SJ, Van Lijsebettens M, Granier C. Correlation between leaf growth variables suggest intrinsic and early controls of leaf size in Arabidopsis thaliana. Plant Cell Environ. 28: 1355-1366 (2005).

Cookson SJ, Williams LE, Miller AJ. Light-dark changes in cytosolic nitrate pools depend on nitrate reductase activity in Arabidopsis leaf cells. Plant Physiol. 138: 1097-1105 (2005).

Cooley MB, Pathirana S, Wu HJ, Kachroo P, Klessig DF. Members of the Arabidopsis HRT/RPP8 family of resistance genes confer resistance to both viral and oomycete pathogens. Plant Cell 12: 663-676 (2000).

Cooper RM, Williams JS. Elemental sulphur as an induced antifungal substance in plant defence. J. Exp. Bot. 55: 1947-1953 (2004).

Copenhaver GP, Keith KC, Preuss D. Tetrad analysis in higher plants. A budding technology. Plant Physiol. 124: 7-16 (2000).

Copenhaver GP, Preuss D. Centromeres in the genomic era: unraveling paradoxes. Curr. Opin. Plant Biol. 2: 104-108 (1999).

Coppinger P, Repetti PP, Day B, Dahlbeck D, Mehlert A, Staskawicz BJ. Overexpression of the plasma membrane-localized NDR1 protein results in enhanced bacterial disease resistance in Arabidopsis thaliana. Plant J. 40: 225-237 (2004).

Corbesier L, Coupland G. Photoperiodic flowering of Arabidopsis: integrating genetic and physiological approaches to characterization of the floral stimulus. Plant Cell Environ. 28: 54-66 (2005).

Corbesier L, Coupland G. The quest for florigen: a review of recent progress. J. Exp. Bot. 57: 3395-3403 (2006).

Corbesier L, Havelange A, Lejeune P, Bernier G, Perilleux C. N content of phloem and xylem exudates during the transition to flowering in Sinapis alba and Arabidopsis thaliana. Plant Cell Environ. 24: 367-375 (2001).

Corbesier L, Kustermans G, Perilleux C, Melzer S, Moritz T, Havelange A, Bernier G. Gibberellins and the floral transition in Sinapis alba. Physiol. Plant. 122: 152-158 (2004).

Corbesier L, Lejeune P, Bernier G. The role of carbohydrates in the induction of flowering in Arabidopsis thaliana: comparison between the wild type and a starchless mutant. Planta 206: 131-137 (1998).

Corbesier L, Prinsen E, Jacqmard A, Lejeune P, Van Onckelen H, Perilleux C, Bernier G. Cytokinin levels in leaves, leaf exudate and shoot apical meristem of Arabidopsis thaliana during floral transition. J. Exp. Bot. 54: 2511-2517 (2003).

Cordier H, Karst F, Berges T. Heterologous expression in Saccharomyces cerevisiae of an Arabidopsis thaliana cDNA encoding mevalonate diphosphate decarboxylase. Plant Mol. Biol. 39: 953-967 (1999).

Corellou F, Camasses A, Ligat L, Peaucellier G, Bouget FY. Atypical regulation of a green lineage-specific B-type cyclin-dependent kinase. Plant Physiol. 138: 1627-1636 (2005).

Corina Vlot A, Liu PP, Cameron RK, Park SW, Yang Y, Kumar D, Zhou F, Padukkavidana T, Gustafsson C, Pichersky E, Klessig DF. Identification of likely orthologs of tobacco salicylic acid-binding protein 2 and their role in systemic acquired resistance in Arabidopsis thaliana. Plant J. 56: 445-456 (2008).

Cornah JE, Germain V, Ward JL, Beale MH, Smith SM. Lipid utilization, gluconeogenesis and seedling growth in Arabidopsis mutants lacking the glyoxylate cycle enzyme malate synthase. J. Biol. Chem. 279: 42916-42923 (2004).

Coruzzi GM, Zhou L. Carbon and nitrogen sensing and signaling in plants: emerging ‘matrix effects’. Curr. Opin. Plant Biol. 4: 247-253 (2001).

Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM. Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation. Plant Cell 10: 741-752 (1998).

Cosio C, Dunand C. Specific functions of individual class III peroxidase genes. J. Exp. Bot. 60: 391-408 (2009).

Cosio C, Martinoia E, Keller C. Hyperaccumulation of cadmium and zinc in Thlaspi caerulescens and Arabidopsis halleri at the leaf cellular level. Plant Physiol. 134: 716-725 (2004).

Cosio C, Vuillemin L, De Meyer M, Kevers C, Penel C, Dunand C. An anionic class III peroxidase from zucchini may regulate hypocotyl elongation through its auxin oxidase activity. Planta 229: 823-836 (2009).

Costa CL, Arruda P, Benedetti CE. An Arabidopsis gene induced by wounding functionally homologous to flavoprotein oxidoreductases. Plant Mol. Biol. 44: 61-71 (2000).

Cotelle V, Meek SE, Provan F, Milne FC, Morrice N, MacKintosh C. 14-3-3s regulate global cleavage of their diverse binding partners in sugar-starved Arabidopsis cells. EMBO J. 19: 2869-2876 (2000).

Coupe SA, Palmer BG, Lake JA, Overy SA, Oxborough K, Woodward FI, Gray JE, Quick WP. Systemic signalling of environmental cues in Arabidopsis leaves. J. Exp. Bot. 57: 329-341 (2006).

Coupe SA, Sinclair BK, Watson LM, Heyes JA, Eason JR. Identification of dehydration-responsive cysteine proteases during post-harvest senescence of broccoli florets. J. Exp. Bot. 54: 1045-1056 (2003).

Coupe SA, Taylor JE, Roberts JA. Characterisation of an mRNA encoding a metallothionein-like protein that accumulates during ethylene-promoted abscission of Sambucus nigra L. leaflets. Planta 197: 442-447 (1995).

Coupe SA, Watson LM, Ryan DJ, Pinkney TT, Eason JR. Molecular analysis of programmed cell death during senescence in Arabidopsis thaliana and Brassica oleracea: cloning broccoli LSD1, Bax inhibitor and serine palmitoyltransferase homologues. J. Exp. Bot. 55: 59-68 (2004).

Courbot M, Willems G, Motte P, Arvidsson S, Roosens N, Saumitou-Laprade P, Verbruggen N. A major quantitative trait locus for cadmium tolerance in Arabidopsis halleri colocalizes with HMA4, a gene encoding a heavy metal ATPase. Plant Physiol. 144: 1052-1065 (2007).

Coursol S, Le Stunff H, Lynch DV, Gilroy S, Assmann SM, Spiegel S. Arabidopsis sphingosine kinase and the effects of phytosphingosine-1-phosphate on stomatal aperture. Plant Physiol. 137: 724-737 (2005).

Cousins AB, Pracharoenwattana I, Zhou W, Smith SM, Badger MR. Peroxisomal malate dehydrogenase is not essential for photorespiration in Arabidopsis but its absence causes an increase in the stoichiometry of photorespiratory CO2 release. Plant Physiol. 148: 786-795 (2008).

Couteau F, Belzile F, Horlow C, Grandjean O, Vezon D, Doutriaux MP. Random chromosome segregation without meiotic arrest in both male and female meiocytes of a dmc1 mutant of Arabidopsis. Plant Cell 11: 1623-1634 (1999).

Couturier J, Montanini B, Martin F, Brun A, Blaudez D, Chalot M. The expanded family of ammonium transporters in the perennial poplar plant. New Phytol. 174: 137-150 (2007).

Covello PS, Reed DW. Functional expression of the extraplastidial Arabidopsis thaliana oleate desaturase gene (FAD2) in Saccharomyces cerevisiae. Plant Physiol. 111: 223-226 (1996).

Covic L, Silva NF, Lew RR. Functional characterization of ARAKIN (ATMEKK1): a possible mediator in an osmotic stress response pathway in higher plants. Biochim. Biophys. Acta 1451: 242-254 (1999).

Covington MF, Panda S, Liu XL, Strayer CA, Wagner DR, Kay SA. Elf3 modulates resetting of the circadian clock in Arabidopsis. Plant Cell 13: 1305-1316 (2001).

Cowl JS, Hartley N, Xie DX, Whitelam GC, Murphy GP, Harberd NP. The PHYC gene of Arabidopsis. Absence of the third intron found in PHYA and PHYB. Plant Physiol. 106: 813-814 (1994).

Cowling RJ, Kamiya Y, Seto H, Harberd NP. Gibberellin dose-response regulation of GA4 gene transcript levels in Arabidopsis. Plant Physiol. 117: 1195-1203 (1998).

Cox MC, Peeters AJ, Voesenek LA. The stimulating effects of ethylene and auxin on petiole elongation and on hyponastic curvature are independent processes in submerged Rumex palustris. Plant Cell Environ. 29: 282-290 (2006).

Craciun A, Jacobs M, Vauterin M. Arabidopsis loss-of-function mutant in the lysine pathway points out complex regulation mechanisms. FEBS Lett. 487: 234-238 (2000).

Craciun AR, Courbot M, Bourgis F, Salis P, Saumitou-Laprade P, Verbruggen N. Comparative cDNA-AFLP analysis of Cd-tolerant and -sensitive genotypes derived from crosses between the Cd hyperaccumulator Arabidopsis halleri and Arabidopsis lyrata ssp. petraea. J. Exp. Bot. 57: 2967-2983 (2006).

Craft J, Samalova M, Baroux C, Townley H, Martinez A, Jepson I, Tsiantis M, Moore I. New pOp/LhG4 vectors for stringent glucocorticoid-dependent transgene expression in Arabidopsis. Plant J. 41: 899-918 (2005).

Craig A, Ewan R, Mesmar J, Gudipati V, Sadanandom A. E3 ubiquitin ligases and plant innate immunity. J. Exp. Bot. 60: 1123-1132 (2009).

Crawford NM. Mechanisms for nitric oxide synthesis in plants. J. Exp. Bot. 57: 471-478 (2006).

Crawford NM, Davis RW. Molecular analysis of nitrate regulation of nitrate reductase in squash and Arabidopsis. In "Molecular and Genetic Aspects of Nitrate Assimilation" (JL Wray, JR Kinghorn eds) Oxford Science Publications, Oxford, pp. 328-337 (1989).

Crawford NM, Glass ADM. Molecular and physiological aspects of nitrate uptake in plants. Trends Plant Sci. 3: 389-395 (1998).

Creff A, Leonard B, Desnos T. Targeted Ds-tagging strategy generates high allelic diversity at the Arabidopsis HY2 locus. Plant Mol. Biol. 61: 603-613 (2006).

Cremer F, Coupland G. Distinct photoperiodic responses are conferred by the same genetic pathway in Arabidopsis and in rice. Trends Plant Sci. 8: 405-407 (2003).

Cremer F, Lonnig WE, Saedler H, Huijser P. The delayed terminal flower phenotype is caused by a conditional mutation in the centroradialis gene of snapdragon. Plant Physiol. 126: 1031-1041 (2001).

Crespo JL, Diaz-Troya S, Florencio FJ. Inhibition of target of rapamycin signaling by rapamycin in the unicellular green alga Chlamydomonas reinhardtii. Plant Physiol. 139: 1736-1749 (2005).

Crete P, Caboche M, Meyer C. Nitrite reductase expression is regulated at the post-transcriptional level by the nitrogen source in Nicotiana plumbaginifolia and Arabidopsis thaliana. Plant J. 11: 625-634 (1997).

Crichton PG, Affourtit C, Albury MS, Carre JE, Moore AL. Constitutive activity of Sauromatum guttatum alternative oxidase in Schizosaccharomyces pombe implicates residues in addition to conserved cysteines in alpha-keto acid activation. FEBS Lett. 579: 331-336 (2005).

Criqui MC, De Almeida Engler J, Camasses A, Capron A, Parmentier Y, Inze D, Genschik P. Molecular characterization of plant ubiquitin-conjugating enzymes belonging to the UbcP4/E2-C/UBCx/UbcH10 gene family. Plant Physiol. 130: 1230-1240 (2002).

Critchley JH, Zeeman SC, Takaha T, Smith AM, Smith SM. A critical role for disproportionating enzyme in starch breakdown is revealed by a knock-out mutation in Arabidopsis. Plant J. 26: 89-100 (2001).

Crombie HJ, Chengappa S, Jarman C, Sidebottom C, Reid JS. Molecular characterisation of a xyloglucan oligosaccharide-acting alpha-D-xylosidase from nasturtium (Tropaeolum majus L.) cotyledons that resembles plant 'apoplastic' alpha-D-glucosidases. Planta 214: 406-413 (2002).

Crosatti C, Polverino de Laureto P, Bassi R, Cattivelli L. The interaction between cold and light controls the expression of the cold-regulated barley gene cor14b and the accumulation of the corresponding protein. Plant Physiol. 119: 671-680 (1999).

Cross JM, von Korff M, Altmann T, Bartzetko L, Sulpice R, Gibon Y, Palacios N, Stitt M. Variation of enzyme activities and metabolite levels in 24 Arabidopsis accessions growing in carbon-limited conditions. Plant Physiol. 142: 1574-1588 (2006).

Crossley SJ, Greenland AJ, Dickinson HG. The characterisation of tapetum-specific cDNAs isolated from a Lilium henryi L. meiocyte subtractive cDNA library. Planta 196: 523-529 (1995).

Crowell DN, Huizinga DH, Deem AK, Trobaugh C, Denton R, Sen SE. Arabidopsis thaliana plants possess a specific farnesylcysteine lyase that is involved in detoxification and recycling of farnesylcysteine. Plant J. 50: 839-847 (2007).

Crowell DN, Kennedy M. Identification and functional expression in yeast of a prenylcysteine alpha-carboxyl methyltransferase gene from Arabidopsis thaliana. Plant Mol. Biol. 45: 469-476 (2001).

Crowell EF, Bischoff V, Desprez T, Rolland A, Stierhof YD, Schumacher K, Gonneau M, Hofte H, Vernhettes S. Pausing of Golgi bodies on microtubules regulates secretion of cellulose synthase complexes in Arabidopsis. Plant Cell 21: 1141-1154 (2009).

Cruz-Hernandez A, Gomez-Lim MA. Alternative oxidase from mango (Mangifera indica, L.) is differentially regulated during fruit ripening. Planta 197: 569-576 (1995).

Cruz-Ortega R, Cushman JC, Ownby JD. cDNA clones encoding 1,3-beta-glucanase and a fimbrin-like cytoskeletal protein are induced by Al toxicity in wheat roots. Plant Physiol. 114: 1453-1460 (1997).

Cruz-Ramirez A, Lopez-Bucio J, Ramirez-Pimentel G, Zurita-Silva A, Sanchez-Calderon L, Ramirez-Chavez E, Gonzalez-Ortega E, Herrera-Estrella L. The xipotl mutant of Arabidopsis reveals a critical role for phospholipid metabolism in root system development and epidermal cell integrity. Plant Cell 16: 2020-2034 (2004).

Cuevas JC, Lopez-Cobollo R, Alcazar R, Zarza X, Koncz C, Altabella T, Salinas J, Tiburcio AF, Ferrando A. Putrescine is involved in Arabidopsis freezing tolerance and cold acclimation by regulating ABA levels in response to low temperature. Plant Physiol. 148: 1094-1105 (2008).

Cui H, Benfey PN. Interplay between SCARECROW, GA and LIKE HETEROCHROMATIN PROTEIN 1 in ground tissue patterning in the Arabidopsis root. Plant J. 58: 1016-1027 (2009).

Cui J, Jander G, Racki LR, Kim PD, Pierce NE, Ausubel FM. Signals involved in Arabidopsis resistance to Trichoplusia ni caterpillars induced by virulent and avirulent strains of the phytopathogen Pseudomonas syringae. Plant Physiol. 129: 551-564 (2002).

Cui X, Fan B, Scholz J, Chen Z. Roles of Arabidopsis cyclin-dependent kinase C complexes in cauliflower mosaic virus infection, plant growth, and development. Plant Cell 19: 1388-1402 (2007).

Cui XG, Hao FS, Chen H, Cai JH, Chen J, Wang XC. Isolation and expression of an aquaporin-like gene VfPIP1 in Vicia faba. Prog. Nat. Sci. 15: 496-501 (2005).

Cuin TA, Shabala S. Compatible solutes reduce ROS-induced potassium efflux in Arabidopsis roots. Plant Cell Environ. 30: 875-885 (2007).

Culligan K, Tissier A, Britt A. ATR regulates a G2-phase cell-cycle checkpoint in Arabidopsis thaliana. Plant Cell 16: 1091-1104 (2004).

Culligan KM, Britt AB. Both ATM and ATR promote the efficient and accurate processing of programmed meiotic double-strand breaks. Plant J. 55: 629-638 (2008).

Culligan KM, Hays JB. DNA mismatch repair in plants. An Arabidopsis thaliana gene that predicts a protein belonging to the MSH2 subfamily of eukaryotic MutS homologs. Plant Physiol. 115: 833-839 (1997).

Culligan KM, Hays JB. Arabidopsis MutS homologs-AtMSH2, AtMSH3, AtMSH6, and a novel AtMSH7-form three distinct protein heterodimers with different specificities for mismatched DNA. Plant Cell 12: 991-1002 (2000).

Cuming AC, Cho SH, Kamisugi Y, Graham H, Quatrano RS. Microarray analysis of transcriptional responses to abscisic acid and osmotic, salt, and drought stress in the moss, Physcomitrella patens. New Phytol. 176: 275-287 (2007).

Cummins I, Landrum M, Steel PG, Edwards R. Structure activity studies with xenobiotic substrates using carboxylesterases isolated from Arabidopsis thaliana. Phytochemistry 68: 811-818 (2007).

Cunillera N, Boronat A, Ferrer A. Spatial and temporal patterns of GUS expression directed by 5' regions of the Arabidopsis thaliana farnesyl diphosphate synthase genes FPS1 and FPS2. Plant Mol. Biol. 44: 747-758 (2000).

Cunnac S, Wilson A, Nuwer J, Kirik A, Baranage G, Mudgett MB. A conserved carboxylesterase is a SUPPRESSOR OF AVRBST-ELICITED RESISTANCE in Arabidopsis. Plant Cell 19: 688-705 (2007).

Curaba J, Herzog M, Vachon G. GeBP, the first member of a new gene family in Arabidopsis, encodes a nuclear protein with DNA-binding activity and is regulated by KNAT1. Plant J. 33: 305-317 (2003).

Curaba J, Moritz T, Blervaque R, Parcy F, Raz V, Herzog M, Vachon G. AtGA3ox2, a key gene responsible for bioactive gibberellin biosynthesis, is regulated during embryogenesis by LEAFY COTYLEDON2 and FUSCA3 in Arabidopsis. Plant Physiol. 136: 3660-3669 (2004).

Curi GC, Chan RL, Gonzalez DH. The leader intron of Arabidopsis thaliana genes encoding cytochrome c oxidase subunit 5c promotes high-level expression by increasing transcript abundance and translation efficiency. J. Exp. Bot. 56: 2563-2571 (2005).

Curie C, Cassin G, Couch D, Divol F, Higuchi K, Le Jean M, Misson J, Schikora A, Czernic P, Mari S. Metal movement within the plant: contribution of nicotianamine and yellow stripe 1-like transporters. Ann. Bot. (Lond.) 103: 1-11 (2009).

Curien G, Dumas R, Douce R. Nucleotide sequence and characterization of a cDNA encoding the acetohydroxy acid isomeroreductase from Arabidopsis thaliana. Plant Mol. Biol. 21: 717-722 (1993).

Curien G, Dumas R, Ravanel S, Douce R. Characterization of an Arabidopsis thaliana cDNA encoding an S-adenosylmethionine-sensitive threonine synthase. Threonine synthase from higher plants. FEBS Lett. 390: 85-90 (1996).

Curien G, Job D, Douce R, Dumas R. Allosteric activation of Arabidopsis threonine synthase by S-adenosylmethionine. Biochemistry 37: 13212-13221 (1998).

Curien G, Laurencin M, Robert-Genthon M, Dumas R. Allosteric monofunctional aspartate kinases from Arabidopsis. FEBS J. 274: 164-176 (2007).

Curien G, Ravanel S, Dumas R. A kinetic model of the branch-point between the methionine and threonine biosynthesis pathways in Arabidopsis thaliana. Eur. J. Biochem. 270: 4615-4627 (2003).

Curien G, Ravanel S, Robert M, Dumas R. Identification of six novel allosteric effectors of Arabidopsis thaliana aspartate kinase-homoserine dehydrogenase isoforms. Physiological context sets the specificity. J. Biol. Chem. 280: 41178-41183 (2005).

Curioni PMG, Reidy B, Flura T, Vogeli-Lange R, Nosberger J, Hartwig UA. Increased abundance of MTD1 and MTD2 mRNAs in nodules of decapitated Medicago truncatula. Plant Mol. Biol. 44: 477-485 (2000).

Curtis IS, Hanada A, Yamaguchi S, Kamiya Y. Modification of plant architecture through the expression of GA 2-oxidase under the control of an estrogen inducible promoter in Arabidopsis thaliana L. Planta 222: 957-967 (2005).

Curtis MD, Grossniklaus U. A gateway cloning vector set for high-throughput functional analysis of genes in planta. Plant Physiol. 133: 462-469 (2003).

Curtis MJ, Belcram K, Bollmann SR, Tominey CM, Hoffman PD, Mercier R, Hays JB. Reciprocal chromosome translocation associated with tDNA-insertion mutation in Arabidopsis: genetic and cytological analyses of consequences for gametophyte development and for construction of doubly mutant lines. Planta 229: 731-745 (2009).

Cushing DA, Forsthoefel NR, Gestaut DR, Vernon DM. Arabidopsis emb175 and other ppr knockout mutants reveal essential roles for pentatricopeptide repeat (PPR) proteins in plant embryogenesis. Planta 221: 424-436 (2005).

Czako M, Marton L. The herpes simplex virus thymidine kinase gene as a conditional negative-selection marker gene in Arabidopsis thaliana. Plant Physiol. 104: 1067-1071 (1994).

Czarnecka-Verner E, Yuan CX, Scharf KD, Englich G, Gurley WB. Plants contain a novel multi-member class of heat shock factors without transcriptional activator potential. Plant Mol. Biol. 43: 459-471 (2000).

Czechowski T, Bari RP, Stitt M, Scheible WR, Udvardi MK. Real-time RT-PCR profiling of over 1400 Arabidopsis transcription factors: unprecedented sensitivity reveals novel root- and shoot-specific genes. Plant J. 38: 366-379 (2004).

Czechowski T, Stitt M, Altmann T, Udvardi MK, Scheible WR. Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis. Plant Physiol. 139: 5-17 (2005).

Czempinski K, Zimmermann S, Ehrhardt T, Muller-Rober B. New structure and function in plant K+ channels: KCO1, an outward rectifier with a steep Ca2+ dependency. EMBO J. 16: 2565-2575 (1997).

D'Angelo C, Weinl S, Batistic O, Pandey GK, Cheong YH, Schultke S, Albrecht V, Ehlert B, Schulz B, Harter K, Luan S, Bock R, Kudla J. Alternative complex formation of the Ca(2+)-regulated protein kinase CIPK1 controls abscisic acid-dependent and independent stress responses in Arabidopsis. Plant J. 48: 857-872 (2006).

D'Auria JC, Chen F, Pichersky E. Characterization of an acyltransferase capable of synthesizing benzylbenzoate and other volatile esters in flowers and damaged leaves of Clarkia breweri. Plant Physiol. 130: 466-476 (2002).

D'Auria JC, Gershenzon J. The secondary metabolism of Arabidopsis thaliana: growing like a weed. Curr. Opin. Plant Biol. 8: 308-316 (2005).

D'Erfurth I, Cosson V, Eschstruth A, Lucas H, Kondorosi A, Ratet P. Efficient transposition of the Tnt1 tobacco retrotransposon in the model legume Medicago truncatula. Plant J. 34: 95-106 (2003).

Da Costa M, Bach L, Landrieu I, Bellec Y, Catrice O, Brown S, De Veylder L, Lippens G, Inze D, Faure JD. Arabidopsis PASTICCINO2 is an antiphosphatase involved in regulation of cyclin-dependent kinase A. Plant Cell 18: 1426-1437 (2006).

da Costa-Nunes JA, Bhatt AM, O'Shea S, West CE, Bray CM, Grossniklaus U, Dickinson HG. Characterization of the three Arabidopsis thaliana RAD21 cohesins reveals differential responses to ionizing radiation. J. Exp. Bot. 57: 971-983 (2006).

Dafny-Yelin M, Tzfira T, Vainstein A, Adam Z. Non-redundant functions of sHSP-CIs in acquired thermotolerance and their role in early seed development in Arabidopsis. Plant Mol. Biol. 67: 363-373 (2008).

Dahan J, Etienne P, Petitot AS, Houot V, Blein JP, Suty L. Cryptogein affects expression of alpha3, alpha6 and beta1 20S proteasome subunits encoding genes in tobacco. J. Exp. Bot. 52: 1947-1948 (2001).

Dahl M, Meskiene I, Bogre L, Ha DT, Swoboda I, Hubmann R, Hirt H, Heberle-Bors E. The D-type alfalfa cyclin gene cycMs4 complements G1 cyclin-deficient yeast and is induced in the G1 phase of the cell cycle. Plant Cell 7: 1847-1857 (1995).

Dahnhardt D, Falk J, Appel J, van der Kooij TAW, Schulz-Friedrich R, Krupinska K. The hydroxyphenylpyruvate dioxygenase from Synechocystis sp PCC 6803 is not required for plastoquinone biosynthesis. FEBS Lett. 523: 177-181 (2002).

Dai N, Schaffer A, Petreikov M, Shahak Y, Giller Y, Ratner K, Levine A, Granot D. Overexpression of Arabidopsis hexokinase in tomato plants inhibits growth, reduces photosynthesis, and induces rapid senescence. Plant Cell 11: 1253-1266 (1999).

Dai X, Xu Y, Ma Q, Xu W, Wang T, Xue Y, Chong K. Overexpression of an R1R2R3 MYB gene, OsMYB3R-2, increases tolerance to freezing, drought, and salt stress in transgenic Arabidopsis. Plant Physiol. 143: 1739-1751 (2007).

Dai Y, Wang H, Li B, Huang J, Liu X, Zhou Y, Mou Z, Li J. Increased expression of MAP KINASE KINASE7 causes deficiency in polar auxin transport and leads to plant architectural abnormality in Arabidopsis. Plant Cell 18: 308-320 (2006).

Dall'osto L, Caffarri S, Bassi R. A mechanism of nonphotochemical energy dissipation, independent from PsbS, revealed by a conformational change in the antenna protein CP26. Plant Cell 17: 1217-1232 (2005).

Dall'Osto L, Cazzaniga S, North H, Marion-Poll A, Bassi R. The Arabidopsis aba4-1 mutant reveals a specific function for neoxanthin in protection against photooxidative stress. Plant Cell 19: 1048-1064 (2007).

Dall'osto L, Fiore A, Cazzaniga S, Giuliano G, Bassi R. Different roles of alpha- and beta-branch xanthophylls in photosystem assembly and photoprotection. J. Biol. Chem. 282: 35056-35068 (2007).

Damari-Weissler H, Ginzburg A, Gidoni D, Mett A, Krassovskaya I, Weber AP, Belausov E, Granot D. Spinach SoHXK1 is a mitochondria-associated hexokinase. Planta 226: 1053-1058 (2007).

Dammann C, Ichida A, Hong B, Romanowsky SM, Hrabak EM, Harmon AC, Pickard BG, Harper JF. Subcellular targeting of nine calcium-dependent protein kinase isoforms from Arabidopsis. Plant Physiol. 132: 1840-1848 (2003).

Damme DV, Bouget FY, Poucke KV, Inze D, Geelen D. Molecular dissection of plant cytokinesis and phragmoplast structure: a survey of GFP-tagged proteins. Plant J. 40: 386-398 (2004).

Dan H, Yang G, Zheng ZL. A negative regulatory role for auxin in sulphate deficiency response in Arabidopsis thaliana. Plant Mol. Biol. 63: 221-235 (2007).

Dangl M, Brosch G, Haas H, Loidl P, Lusser A. Comparative analysis of HD2 type histone deacetylases in higher plants. Planta 213: 280-285 (2001).

Dangoor I, Peled-Zehavi H, Levitan A, Pasand O, Danon A. A small family of chloroplast atypical thioredoxins. Plant Physiol. 149: 1240-1250 (2009).

Daniell H, Dhingra A. Multigene engineering: dawn of an exciting new era in biotechnology. Curr. Opin. Biotechnol. 13: 136-141 (2002).

Daniels MJ, Mirkov TE, Chrispeels MJ. The plasma membrane of Arabidopsis thaliana contains a mercury-insensitive aquaporin that is a homolog of the tonoplast water channel protein TIP. Plant Physiol. 106: 1325-1333 (1994).

Danilevskaya ON, Hermon P, Hantke S, Muszynski MG, Kollipara K, Ananiev EV. Duplicated fie genes in maize: expression pattern and imprinting suggest distinct functions. Plant Cell 15: 425-438 (2003).

Danon A, Coll NS, Apel K. Cryptochrome-1-dependent execution of programmed cell death induced by singlet oxygen in Arabidopsis thaliana. Proc. Natl. Acad. Sci. U.S.A. 103: 17036-17041 (2006).

Danon A, Miersch O, Felix G, Camp RG, Apel K. Concurrent activation of cell death-regulating signaling pathways by singlet oxygen in Arabidopsis thaliana. Plant J. 41: 68-80 (2005).

Dany AL, Douki T, Triantaphylides C, Cadet J. Repair of the main UV-induced thymine dimeric lesions within Arabidopsis thaliana DNA: evidence for the major involvement of photoreactivation pathways. J. Photochem. Photobiol. B. 65: 127-135 (2001).

Danyluk J, Kane NA, Breton G, Limin AE, Fowler DB, Sarhan F. TaVRT-1, a putative transcription factor associated with vegetative to reproductive transition in cereals. Plant Physiol. 132: 1849-1860 (2003).

Daram P, Brunner S, Rausch C, Steiner C, Amrhein N, Bucher M. Pht2;1 encodes a low-affinity phosphate transporter from Arabidopsis. Plant Cell 11: 2153-2166 (1999).

Darrah C, Taylor BL, Edwards KD, Brown PE, Hall A, McWatters HG. Analysis of phase of LUCIFERASE expression reveals novel circadian quantitative trait loci in Arabidopsis. Plant Physiol. 140: 1464-1474 (2006).

Das S, Hussain A, Bock C, Keller WA, Georges F. Cloning of Brassica napus phospholipase C2 (BnPLC2), phosphatidylinositol 3-kinase (BnVPS34) and phosphatidylinositol synthase1 (BnPtdIns S1)--comparative analysis of the effect of abiotic stresses on the expression of phosphatidylinositol signal … Planta 220: 777-784 (2005).

Daschner K, Couee I, Binder S. The mitochondrial isovaleryl-coenzyme A dehydrogenase of Arabidopsis oxidizes intermediates of leucine and valine catabolism. Plant Physiol. 126: 601-612 (2001).

Daschner K, Thalheim C, Guha C, Brennicke A, Binder S. In plants a putative isovaleryl-CoA-dehydrogenase is located in mitochondria. Plant Mol. Biol. 39: 1275-1282 (1999).

Datta S, Hettiarachchi GH, Deng XW, Holm M. Arabidopsis CONSTANS-LIKE3 is a positive regulator of red light signaling and root growth. Plant Cell 18: 70-84 (2006).

Datta S, Johansson H, Hettiarachchi C, Irigoyen ML, Desai M, Rubio V, Holm M. LZF1/SALT TOLERANCE HOMOLOG3, an Arabidopsis B-box protein involved in light-dependent development and gene expression, undergoes COP1-mediated ubiquitination. Plant Cell 20: 2324-2338 (2008).

Datta SK. Recent developments in transgenics for abiotic stress tolerance in rice. JIRCAS Working Report No.23, "Genetic Engineering of Crop Plants for Abiotic Stress" (Iwanaga M, ed.) p. 43-53 (2002).

Daugherty CJ, Rooney MF, Miller PW, Ferl RJ. Molecular organization and tissue-specific expression of an Arabidopsis 14-3-3 gene. Plant Cell 8: 1239-1248 (1996).

Davenport RJ, Munoz-Mayor A, Jha D, Essah PA, Rus A, Tester M. The Na+ transporter AtHKT1;1 controls retrieval of Na+ from the xylem in Arabidopsis. Plant Cell Environ. 30: 497-507 (2007).

Davey MW, Bauw G, Montagu MV. Analysis of ascorbate in plant tissues by high-performance capillary zone electrophoresis. Anal. Biochem. 239: 8-19 (1996).

Davey MW, Bauw G, Van Montagu M. Simultaneous high-performance capillary electrophoresis analysis of the reduced and oxidised forms of ascorbate and glutathione. J. Chromatogr. B. Biomed Sci. Appl. 697: 269-276 (1997).

Davey MW, Gilot C, Persiau G, Ostergaard J, Han Y, Bauw GC, Van Montagu MC. Ascorbate biosynthesis in Arabidopsis cell suspension culture. Plant Physiol. 121: 535-544 (1999).

David Marks M, Betancur L, Gilding E, Chen F, Bauer S, Wenger JP, Dixon RA, Haigler CH. A new method for isolating large quantities of Arabidopsis trichomes for transcriptome, cell wall and other types of analyses. Plant J. 56: 483-492 (2008).

David-Assael O, Saul H, Saul V, Mizrachy-Dagri T, Berezin I, Brook E, Shaul O. Expression of AtMHX, an Arabidopsis vacuolar metal transporter, is repressed by the 5' untranslated region of its gene. J. Exp. Bot. 56: 1039-1047 (2005).

Davidson SE, Smith JJ, Helliwell CA, Poole AT, Reid JB. The pea gene LH encodes ent-kaurene oxidase. Plant Physiol. 134: 1123-1134 (2004).

Davies DR, Bindschedler LV, Strickland TS, Bolwell GP. Production of reactive oxygen species in Arabidopsis thaliana cell suspension cultures in response to an elicitor from Fusarium oxysporum: implications for basal resistance. J. Exp. Bot. 57: 1817-1827 (2006).

Davies GJ, Sheikh MA, Ratcliffe OJ, Coupland G, Furner IJ. Genetics of homology-dependent gene silencing in Arabidopsis; a role for methylation. Plant J. 12: 791-804 (1997).

Davies LM, Harris PJ. Atomic force microscopy of microfibrils in primary cell walls. Planta 217: 283-289 (2003).

Davies RT, Goetz DH, Lasswell J, Anderson MN, Bartel B. IAR3 encodes an auxin conjugate hydrolase from Arabidopsis. Plant Cell 11: 365-376 (1999).

Davies TGE, Coleman JOD. The Arabidopsis thaliana ATP-binding cassette proteins: an emerging superfamily. Plant Cell Environ. 23: 431-443 (2000).

Davis SJ. Integrating hormones into the floral-transition pathway of Arabidopsis thaliana. Plant Cell Environ. 32: 1201-1210 (2009).

Davis SJ, Bhoo SH, Durski AM, Walker JM, Vierstra RD. The heme-oxygenase family required for phytochrome chromophore biosynthesis is necessary for proper photomorphogenesis in higher plants. Plant Physiol. 126: 656-669 (2001).

Davis SJ, Vierstra RD. Soluble, highly fluorescent variants of green fluorescent protein (GFP) for use in higher plants. Plant Mol. Biol. 36: 521-528 (1998).

Davison PA, Hunter CN, Horton P. Overexpression of beta-carotene hydroxylase enhances stress tolerance in Arabidopsis. Nature 418: 203-206 (2002).

Davletova S, Rizhsky L, Liang H, Shengqiang Z, Oliver DJ, Coutu J, Shulaev V, Schlauch K, Mittler R. Cytosolic ascorbate peroxidase 1 is a central component of the reactive oxygen gene network of Arabidopsis. Plant Cell 17: 268-281 (2005).

Davletova S, Schlauch K, Coutu J, Mittler R. The zinc-finger protein zat12 plays a central role in reactive oxygen and abiotic stress signaling in Arabidopsis. Plant Physiol. 139: 847-856 (2005).

Davuluri GR, Tuinen A, Mustilli AC, Manfredonia A, Newman R, Burgess D, Brummell DA, King SR, Palys J, Uhlig J, Pennings HM, Bowler C. Manipulation of DET1 expression in tomato results in photomorphogenic phenotypes caused by post-transcriptional gene silencing. Plant J. 40: 344-354 (2004).

Day B, Dahlbeck D, Huang J, Chisholm ST, Li D, Staskawicz BJ. Molecular basis for the RIN4 negative regulation of RPS2 disease resistance. Plant Cell 17: 1292-1305 (2005).

Day B, Dahlbeck D, Staskawicz BJ. NDR1 interaction with RIN4 mediates the differential activation of multiple disease resistance pathways in Arabidopsis. Plant Cell 18: 2782-2791 (2006).

Day IS, Reddy AS. Isolation and characterization of two cyclin-like cDNAs from Arabidopsis. Plant Mol. Biol. 36: 451-461 (1998).

Day RC, Herridge RP, Ambrose BA, Macknight RC. Transcriptome analysis of proliferating Arabidopsis endosperm reveals biological implications for the control of syncytial division, cytokinin signalling, and gene expression regulation. Plant Physiol. 148: 1964-1984 (2008).

de Almeida Engler J, De Veylder L, De Groodt R, Rombauts S, Boudolf V, De Meyer B, Hemerly A, Ferreira P, Beeckman T, Karimi M, Hilson P, Inzé D, Engler G. Systematic analysis of cell-cycle gene expression during Arabidopsis development. Plant J. 59: 645-660 (2009).

De Angeli A, Monachello D, Ephritikhine G, Frachisse JM, Thomine S, Gambale F, Barbier-Brygoo H. The nitrate/proton antiporter AtCLCa mediates nitrate accumulation in plant vacuoles. Nature 442: 939-942 (2006).

de Azevedo Souza C, Kim SS, Koch S, Kienow L, Schneider K, McKim SM, Haughn GW, Kombrink E, Douglas CJ. A novel fatty Acyl-CoA Synthetase is required for pollen development and sporopollenin biosynthesis in Arabidopsis. Plant Cell 21: 507-525 (2009).

De Boer AH, Volkov V. Logistics of water and salt transport through the plant: structure and functioning of the xylem. Plant Cell Environ. 26: 87-101 (2003).

de Boer GJ, Testerink C, Pielage G, Nijkamp HJ, Stuitje AR. Sequences surrounding the transcription initiation site of the Arabidopsis enoyl-acyl carrier protein reductase gene control seed expression in transgenic tobacco. Plant Mol. Biol. 39: 1197-1207 (1999).

De Bolle MF, Butaye KM, Goderis IJ, Wouters PF, Jacobs A, Delaure SL, Depicker A, Cammue BP. The influence of matrix attachment regions on transgene expression in Arabidopsis thaliana wild type and gene silencing mutants. Plant Mol. Biol. 63: 533-543 (2007).

de Bruxelles GL, Peacock WJ, Dennis ES, Dolferus R. Abscisic acid induces the alcohol dehydrogenase gene in Arabidopsis. Plant Physiol. 111: 381-391 (1996).

De Coninck B, Le Roy K, Francis I, Clerens S, Vergauwen R, Halliday AM, Smith SM, Van Laere A, Van den Ende W. Arabidopsis AtcwINV3 and 6 are not invertases but are fructan exohydrolases (FEHs) with different substrate specificities. Plant Cell Environ. 28: 432-443 (2005).

de Crecy-Lagard V, El Yacoubi B, Diaz de la Garza R, Noiriel A, Hanson AD. Comparative genomics of bacterial and plant folate synthesis and salvage: predictions and validations. BMC Genomics 8: 245 (2007).

de Folter S, Busscher J, Colombo L, Losa A, Angenent GC. Transcript profiling of transcription factor genes during silique development in Arabidopsis. Plant Mol. Biol. 56: 351-366 (2004).

de Folter S, Immink RG, Kieffer M, Parenicova L, Henz SR, Weigel D, Busscher M, Kooiker M, Colombo L, Kater MM, Davies B, Angenent GC. Comprehensive interaction map of the Arabidopsis MADS box transcription factors. Plant Cell 17: 1424-1433 (2005).

de Folter S, Shchennikova AV, Franken J, Busscher M, Baskar R, Grossniklaus U, Angenent GC, Immink RG. A Bsister MADS-box gene involved in ovule and seed development in petunia and Arabidopsis. Plant J. 47: 934-946 (2006).

De Grauwe L, Vriezen WH, Bertrand S, Phillips A, Vidal AM, Hedden P, Van Der Straeten D. Reciprocal influence of ethylene and gibberellins on response-gene expression in Arabidopsis thaliana. Planta 226: 485-498 (2007).

de Jong M, van Breukelen B, Wittink FR, Menke FL, Weisbeek PJ, Van den Ackerveken G. Membrane-associated transcripts in Arabidopsis; their isolation and characterization by DNA microarray analysis and bioinformatics. Plant J. 46: 708-721 (2006).

de Jong M, Wolters-Arts M, Feron R, Mariani C, Vriezen WH. The Solanum lycopersicum auxin response factor 7 (SlARF7) regulates auxin signaling during tomato fruit set and development. Plant J. 57: 160-170 (2009).

de Kraker JW, Luck K, Textor S, Tokuhisa JG, Gershenzon J. Two Arabidopsis genes (IPMS1 and IPMS2) encode isopropylmalate synthase, the branchpoint step in the biosynthesis of leucine. Plant Physiol. 143: 970-986 (2007).

de la Fuente JI, Amaya I, Castillejo C, Sanchez-Sevilla JF, Quesada MA, Botella MA, Valpuesta V. The strawberry gene FaGAST affects plant growth through inhibition of cell elongation. J. Exp. Bot. 57: 2401-2411 (2006).

De La Fuente Van Bentem S, Vossen JH, Vermeer JE, De Vroomen MJ, Gadella TW Jr, Haring MA, Cornelissen BJ. The subcellular localization of plant protein phosphatase 5 isoforms is determined by alternative splicing. Plant Physiol. 133: 702-712 (2003).

De la Rosa G, Martinez-Martinez A, Pelayo H, Peralta-Videa JR, Sanchez-Salcido B, Gardea-Torresdey JL. Production of low-molecular weight thiols as a response to cadmium uptake by tumbleweed (Salsola kah). Plant Physiol. Biochem. 43: 491-498 (2005).

de la Torre F, De Santis L, Suarez MF, Crespillo R, Canovas FM. Identification and functional analysis of a prokaryotic-type aspartate aminotransferase: implications for plant amino acid metabolism. Plant J. 46: 414-425 (2006).

de La Torre F, Sampedro J, Zarra I, Revilla G. AtFXG1, an Arabidopsis gene encoding alpha-L-fucosidase active against fucosylated xyloglucan oligosaccharides. Plant Physiol. 128: 247-255 (2002).

De Leo F, Bonade-Bottino MA, Ceci LR, Gallerani R, Jouanin L. Opposite effects on Spodoptera littoralis larvae of high expression level of a trypsin proteinase inhibitor in transgenic plants. Plant Physiol. 118: 997-1004 (1998).

de Leon BG, Zorrilla JM, Rubio V, Dahiya P, Paz-Ares J, Leyva A. Interallelic complementation at the Arabidopsis CRE1 locus uncovers independent pathways for the proliferation of vascular initials and canonical cytokinin signalling. Plant J. 38: 70-79 (2004).

De Leon IP, Sanz A, Hamberg M, Castresana C. Involvement of the Arabidopsis alpha-DOX1 fatty acid dioxygenase in protection against oxidative stress and cell death. Plant J. 29: 61-62 (2002).

de Longevialle AF, Hendrickson L, Taylor NL, Delannoy E, Lurin C, Badger M, Harvey Millar A, Small I. The pentatricopeptide repeat gene OTP51 with two LAGLIDADG motifs is required for the cis-splicing of plastid ycf3 intron 2 in Arabidopsis thaliana. Plant J. 56: 157-168 (2008).

de Lorenzo L, Merchan F, Laporte P, Thompson R, Clarke J, Sousa C, Crespi M. A novel plant leucine-rich repeat receptor kinase regulates the response of Medicago truncatula roots to salt stress. Plant Cell 21: 668-680 (2009).

De Luca V. Chapter 9. Metabolic Engineering of Crops with the Tryptophan Decarboxylase of Catharanthus roseus. In "Metabolic Engineering of Plant Secondary Metabolism" (Verpoorte R, Alfermann AW, eds), Kluwer Academic Publishers, Dortrecht, The Netherlands, pp. 179-194 (2000).

De Luca V, Laflamme P. The expanding universe of alkaloid biosynthesis. Curr. Opin. Plant Biol. 4: 225-233 (2001).

De Luca V, St Pierre B. The cell and developmental biology of alkaloid biosynthesis. Trends Plant Sci. 5: 168-173 (2000).

de Martino G, Pan I, Emmanuel E, Levy A, Irish VF. Functional analyses of two tomato APETALA3 genes demonstrate diversification in their roles in regulating floral development. Plant Cell 18: 1833-1845 (2006).

de Meaux J, Goebel U, Pop A, Mitchell-Olds T. Allele-specific assay reveals functional variation in the chalcone synthase promoter of Arabidopsis thaliana that is compatible with neutral evolution. Plant Cell 17: 676-690 (2005).

De Michele R, Vurro E, Rigo C, Costa A, Elviri L, Di Valentin M, Careri M, Zottini M, Sanita di Toppi L, Lo Schiavo F. Nitric oxide is involved in cadmium-induced programmed cell death in Arabidopsis suspension cultures. Plant Physiol. 150: 217-228 (2009).

De Paepe A, De Buck S, Hoorelbeke K, Nolf J, Peck I, Depicker A. High frequency of single-copy T-DNA transformants produced by floral dip in CRE-expressing Arabidopsis plants. Plant J. 59: 517-527 (2009).

De Paepe A, De Grauwe L, Bertrand S, Smalle J, Van der Straeten D. The Arabidopsis mutant eer2 has enhanced ethylene responses in the light. J. Exp. Bot. 56: 2409-2420 (2005).

De Paepe A, Vuylsteke M, Van Hummelen P, Zabeau M, Van Der Straeten D. Transcriptional profiling by cDNA-AFLP and microarray analysis reveals novel insights into the early response to ethylene in Arabidopsis. Plant J. 39: 537-559 (2004).

de Pater S, Pham K, Memelink J, Kijne J. RAP-1 is an Arabidopsis MYC-like R protein homologue, that binds to G-box sequence motifs. Plant Mol. Biol. 34: 169-174 (1997).

De Pino V, Boran M, Norambuena L, Gonzalez M, Reyes F, Orellana A, Moreno S. Complex formation regulates the glycosylation of the reversibly glycosylated polypeptide. Planta 226: 335-345 (2007).

de Reuille PB, Bohn-Courseau I, Ljung K, Morin H, Carraro N, Godin C, Traas J. Computer simulations reveal properties of the cell-cell signaling network at the shoot apex in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A. 103: 1627-1632 (2006).

De Rocher EJ, Vargo-Gogola TC, Diehn SH, Green PJ. Direct evidence for rapid degradation of Bacillus thuringiensis toxin mRNA as a cause of poor expression in plants. Plant Physiol. 117: 1445-1461 (1998).

De Ronde JA, Cress WA, Kruger GH, Strasser RJ, Van Staden J. Photosynthetic response of transgenic soybean plants, containing an Arabidopsis P5CR gene, during heat and drought stress. J. Plant Physiol. 161: 1211-1224 (2004).

de Ronde JA, Spreeth MH, Cress WA. Effect of antisense L-delta1-pyrroline-5-carboxylate reductase transgenic soybean plants subjected to osmotic and drought stress. Plant Growth Regul. 32: 13-26 (2000).

De Smet I, Signora L, Beeckman T, Inze D, Foyer CH, Zhang H. An abscisic acid-sensitive checkpoint in lateral root development of Arabidopsis. Plant J. 33: 543-555 (2003).

De Smet I, Vanneste S, Inze D, Beeckman T. Lateral root initiation or the birth of a new meristem. Plant Mol. Biol. 60: 871-887 (2006).

De Sutter V, Vanderhaeghen R, Tilleman S, Lammertyn F, Vanhoutte I, Karimi M, Inze D, Goossens A, Hilson P. Exploration of jasmonate signalling via automated and standardized transient expression assays in tobacco cells. Plant J. 44: 1065-1076 (2005).

de Torres M, Mansfield JW, Grabov N, Brown IR, Ammouneh H, Tsiamis G, Forsyth A, Robatzek S, Grant M, Boch J. Pseudomonas syringae effector AvrPtoB suppresses basal defence in Arabidopsis. Plant J. 47: 368-382 (2006).

de Torres Zabala M, Bennett MH, Truman WH, Grant MR. Antagonism between salicylic and abscisic acid reflects early host-pathogen conflict and moulds plant defence responses. Plant J. 59: 375-386 (2009).

De Veylder L, de Almeida Engler J, Burssens S, Manevski A, Lescure B, Van Montagu M, Engler G, Inze D. A new D-type cyclin of Arabidopsis thaliana expressed during lateral root primordia formation. Planta 208: 453-462 (1999).

De Veylder L, Van Montagu M, Inze D. Herbicide safener-inducible gene expression in Arabidopsis thaliana. Plant Cell Physiol. 38: 568-577 (1997).

de Virville JD, Cantrel C, Bousquet AL, Hoffelt M, Tenreiro AM, Pinto VV, Arrabaca JD, Caiveau O, Moreau F, Zachowski A. Homeoviscous and functional adaptations of mitochondrial membranes to growth temperature in soybean seedlings. Plant Cell Environ. 25: 1289-1297 (2002).

De Vos M, Jander G. Choice and no-choice assays for testing the resistance of A. thaliana to chewing insects. J. Vis. Exp. 15 pii: 683 (2008).

De Vos M, Van Zaanen W, Koornneef A, Korzelius JP, Dicke M, Van Loon LC, Pieterse CM. Herbivore-induced resistance against microbial pathogens in Arabidopsis. Plant Physiol. 142: 352-363 (2006).

de Zelicourt A, Letousey P, Thoiron S, Campion C, Simoneau P, Elmorjani K, Marion D, Simier P, Delavault P. Ha-DEF1, a sunflower defensin, induces cell death in Orobanche parasitic plants. Planta 226: 591-600 (2007).

Deal RB, Kandasamy MK, McKinney EC, Meagher RB. The nuclear actin-related protein ARP6 is a pleiotropic developmental regulator required for the maintenance of FLOWERING LOCUS C expression and repression of flowering in Arabidopsis. Plant Cell 17: 2633-2646 (2005).

Dean G, Casson S, Lindsey K. KNAT6 gene of Arabidopsis is expressed in roots and is required for correct lateral root formation. Plant Mol. Biol. 54: 71-84 (2004).

Dean JV, Delaney SP. Metabolism of salicylic acid in wild-type, ugt74f1 and ugt74f2 glucosyltransferase mutants of Arabidopsis thaliana. Physiol. Plant. 132: 417-425 (2008).

Dean PJ, Siwiec T, Waterworth WM, Schlögelhofer P, Armstrong SJ, West CE. A novel ATM-dependent X-ray-inducible gene is essential for both plant meiosis and gametogenesis. Plant J. 58: 791-802 (2009).

Dean Rider S Jr, Henderson JT, Jerome RE, Edenberg HJ, Romero-Severson J, Ogas J. Coordinate repression of regulators of embryonic identity by PICKLE during germination in Arabidopsis. Plant J. 35: 33-43 (2003).

Debeaujon I, Nesi N, Perez P, Devic M, Grandjean O, Caboche M, Lepiniec L. Proanthocyanidin-accumulating cells in Arabidopsis testa: regulation of differentiation and role in seed development. Plant Cell 15: 2514-2531 (2003).

Debeaujon I, Peeters AJ, Leon-Kloosterziel KM, Koornneef M. The transparent testa12 gene of Arabidopsis encodes a multidrug secondary transporter-like protein required for flavonoid sequestration in vacuoles of the seed coat endothelium. Plant Cell 13: 853-872 (2001).

Deblasio SL, Luesse DL, Hangarter RP. A plant-specific protein essential for blue-light-induced chloroplast movements. Plant Physiol. 139: 101-114 (2005).

DeBlasio SL, Mullen JL, Luesse DR, Hangarter RP. Phytochrome modulation of blue light-induced chloroplast movements in Arabidopsis. Plant Physiol. 133: 1471-1479 (2003).

Debono A, Yeats TH, Rose JK, Bird D, Jetter R, Kunst L, Samuels L. Arabidopsis LTPG is a glycosylphosphatidylinositol-anchored lipid transfer protein required for export of lipids to the plant surface. Plant Cell 21: 1230-1238 (2009).

Dechaine JM, Gardner G, Weinig C. Phytochromes differentially regulate seed germination responses to light quality and temperature cues during seed maturation. Plant Cell Environ. 32: 1297-1309 (2009).

Decreux A, Thomas A, Spies B, Brasseur R, Cutsem PV, Messiaen J. In vitro characterization of the homogalacturonan-binding domain of the wall-associated kinase WAK1 using site-directed mutagenesis. Phytochemistry 67: 1068-1079 (2006).

Dedeurwaerder S, Menu-Bouaouiche L, Mareck A, Lerouge P, Guerineau F. Activity of an atypical Arabidopsis thaliana pectin methylesterase. Planta 229: 311-321 (2009).

Deeken R, Ache P, Kajahn I, Klinkenberg J, Bringmann G, Hedrich R. Identification of Arabidopsis thaliana phloem RNAs provides a search criterion for phloem-based transcripts hidden in complex datasets of microarray experiments. Plant J. 55: 746-759 (2008).

Deeken R, Geiger D, Fromm J, Koroleva O, Ache P, Langenfeld-Heyser R, Sauer N, May ST, Hedrich R. Loss of the AKT2/3 potassium channel affects sugar loading into the phloem of Arabidopsis. Planta 216: 334-344 (2002).

Deeken R, Ivashikina N, Czirjak T, Philippar K, Becker D, Ache P, Hedrich R. Tumour development in Arabidopsis thaliana involves the Shaker-like K+ channels AKT1 and AKT2/3. Plant J. 34: 778-787 (2003).

Deeken R, Kaldenhoff R. Light-repressible receptor protein kinase: a novel photo-regulated gene from Arabidopsis thaliana. Planta 202: 479-486 (1997).

Deeken R, Sanders C, Ache P, Hedrich R. Developmental and light-dependent regulation of a phloem-localised K+ channel of Arabidopsis thaliana. Plant J. 23: 285-290 (2000).

Degenhardt J, Larsen PB, Howell SH, Kochian LV. Aluminum resistance in the Arabidopsis mutant alr-104 is caused by an aluminum-induced increase in rhizosphere pH. Plant Physiol. 117: 19-27 (1998).

Degenhardt RF, Bonham-Smith PC. Transcript profiling demonstrates absence of dosage compensation in Arabidopsis following loss of a single RPL23a paralog. Planta 228: 627-640 (2008).

Dehesh K, Tai H, Edwards P, Byrne J, Jaworski JG. Overexpression of 3-ketoacyl-acyl-carrier protein synthase IIIs in plants reduces the rate of lipid synthesis. Plant Physiol. 125: 1103-1114 (2001).

Deikman J, Ulrich M. A novel cytokinin-resistant mutant of Arabidopsis with abbreviated shoot development. Planta 195: 440-449 (1995).

Dekkers BJ, Schuurmans JA, Smeekens SC. Interaction between sugar and abscisic acid signalling during early seedling development in Arabidopsis. Plant Mol. Biol. 67: 151-167 (2008).

Dekkers BJ, Schuurmans JA, Smeekens SC. Glucose delays seed germination in Arabidopsis thaliana. Planta 218: 579-588 (2004).

del Campillo E, Abdel-Aziz A, Crawford D, Patterson SE. Root cap specific expression of an endo-beta-1,4-D-glucanase (cellulase): a new marker to study root development in Arabidopsis. Plant Mol. Biol. 56: 309-323 (2004).

Del Pozo JC, Boniotti MB, Gutierrez C. Arabidopsis E2Fc functions in cell division and is degraded by the ubiquitin-SCF(AtSKP2) pathway in response to light. Plant Cell 14: 3057-3071 (2002).

Del Pozo JC, Diaz-Trivino S, Cisneros N, Gutierrez C. The balance between cell division and endoreplication depends on E2FC-DPB, transcription factors regulated by the ubiquitin-SCFSKP2A pathway in Arabidopsis. Plant Cell 18: 2224-2235 (2006).

del Pozo JC, Lopez-Matas MA, Ramirez-Parra E, Gutierrez C. Hormonal control of the plant cell cycle. Physiol. Plant. 123: 173-183 (2005).

Delage L, Duchene AM, Zaepfel M, Marechal-Drouard L. The anticodon and the D-domain sequences are essential determinants for plant cytosolic tRNAVal import into mitochondria. Plant J. 34: 623-633 (2003).

Delaney KJ, Xu R, Zhang J, Li QQ, Yun KY, Falcone DL, Hunt AG. Calmodulin interacts with and regulates the RNA-binding activity of an Arabidopsis polyadenylation factor subunit. Plant Physiol. 140: 1507-1521 (2006).

Delarue M, Santoni V, Caboche M, Bellini C. Cristal mutations in Arabidopsis confer a genetically heritable, recessive, hyperhydric phenotype. Planta 202: 51-61 (1997).

Delatte T, Trevisan M, Parker ML, Zeeman SC. Arabidopsis mutants Atisa1 and Atisa2 have identical phenotypes and lack the same multimeric isoamylase, which influences the branch point distribution of amylopectin during starch synthesis. Plant J. 41: 815-830 (2005).

Delavault P, Estabrook E, Albrecht H, R Wrobel, Yoder JI. Host-root exudates increase gene expression of asparagine synthetase in the roots of a hemiparasitic plant Triphysaria versicolor (Scrophulariaceae). Gene 222: 155-162 (1998).

Delessert C, Kazan K, Wilson IW, Van Der Straeten D, Manners J, Dennis ES, Dolferus R. The transcription factor ATAF2 represses the expression of pathogenesis-related genes in Arabidopsis. Plant J. 43: 745-757 (2005).

Delgado IJ, Wang Z, de Rocher A, Keegstra K, Raikhel NV. Cloning and characterization of AtRGP1. A reversibly autoglycosylated Arabidopsis protein implicated in cell wall biosynthesis. Plant Physiol. 116: 1339-1350 (1998).

Delgado-Benarroch L, Causier B, Weiss J, Egea-Cortines M. FORMOSA controls cell division and expansion during floral development in Antirrhinum majus. Planta 229: 1219-1229 (2009).

Delhaize E. A metal-accumulator mutant of Arabidopsis thaliana. Plant Physiol. 111: 849-855 (1996).

Delhaize E, Gruber BD, Pittman JK, White RG, Leung H, Miao Y, Jiang L, Ryan PR, Richardson AE. A role for the AtMTP11 gene of Arabidopsis in manganese transport and tolerance. Plant J. 51: 198-210 (2007).

Delhaize E, Kataoka T, Hebb DM, White RG, Ryan PR. Genes encoding proteins of the cation diffusion facilitator family that confer manganese tolerance. Plant Cell 15: 1131-1142 (2003).

DeLille JM, Sehnke PC, Ferl RJ. The Arabidopsis 14-3-3 family of signaling regulators. Plant Physiol. 126: 35-38 (2001).

DeLisle AJ. RNA-binding protein from Arabidopsis. Plant Physiol. 102: 313-314 (1993).

Delk NA, Johnson KA, Chowdhury NI, Braam J. CML24, regulated in expression by diverse stimuli, encodes a potential Ca2+ sensor that functions in responses to abscisic acid, daylength, and ion stress. Plant Physiol. 139: 240-253 (2005).

Delker C, Zolman BK, Miersch O, Wasternack C. Jasmonate biosynthesis in Arabidopsis thaliana requires peroxisomal beta-oxidation enzymes - additional proof by properties of pex6 and aim1. Phytochemistry 68: 1642-1650 (2007).

Della Mea M, Caparros-Ruiz D, Claparols I, Serafini-Fracassini D, Rigau J. AtPng1p. The first plant transglutaminase. Plant Physiol. 135: 2046-2054 (2004).

Dellagi A, Rigault M, Segond D, Roux C, Kraepiel Y, Cellier F, Briat JF, Gaymard F, Expert D. Siderophore-mediated upregulation of Arabidopsis ferritin expression in response to Erwinia chrysanthemi infection. Plant J. 43: 262-272 (2005).

Dellapenna D. Progress in the dissection and manipulation of vitamin E synthesis. Trends Plant Sci. 10: 574-579 (2005).

DellaPenna D. Plant metabolic engineering. Plant Physiol. 125: 160-163 (2001).

Dellapenna D, Pogson BJ. Vitamin synthesis in plants: tocopherols and carotenoids. Annu. Rev. Plant Biol. 57: 711-738 (2006).

Delledonne M, Xia Y, Dixon RA, Lamb C. Nitric oxide functions as a signal in plant disease resistance. Nature 394: 585-588 (1998).

Delmas F, Seveno M, Northey JG, Hernould M, Lerouge P, McCourt P, Chevalier C. The synthesis of the rhamnogalacturonan II component 3-deoxy-D-manno-2-octulosonic acid (Kdo) is required for pollen tube growth and elongation. J. Exp. Bot. 59: 2639-2647 (2008).

Delseny M. Towards an accurate sequence of the rice genome. Curr. Opin. Plant Biol. 6: 101-105 (2003).

Delseny M. Re-evaluating the relevance of ancestral shared synteny as a tool for crop improvement. Curr. Opin. Plant Biol. 7: 126-131 (2004).

Delvalle D, Dumez S, Wattebled F, Roldan I, Planchot V, Berbezy P, Colonna P, Vyas D, Chatterjee M, Ball S, Merida A, D'Hulst C. Soluble starch synthase I: a major determinant for the synthesis of amylopectin in Arabidopsis thaliana leaves. Plant J. 43: 398-412 (2005).

Demarsy E, Courtois F, Azevedo J, Buhot L, Lerbs-Mache S. Building-up of the plastid transcriptional machinery during germination and early plant development. Plant Physiol. 142: 993-1003 (2006).

Demarsy E, Fankhauser C. Higher plants use LOV to perceive blue light. Curr. Opin. Plant Biol. 12: 69-74 (2009).

Demchuk ON, Nyporko AIu, Blium IaB. Construction of three-dimensional models of Arabidopsis thaliana FtsZ-proteins on basis of crystal structure of archaebacterial FtsZ-GDP complex. Tsitol. Genet. 40: 10-20 (2006).

Demidchik V, Bowen HC, Maathuis FJ, Shabala SN, Tester MA, White PJ, Davies JM. Arabidopsis thaliana root non-selective cation channels mediate calcium uptake and are involved in growth. Plant J. 32: 799-808 (2002).

Demidchik V, Davenport RJ, Tester M. Nonselective cation channels in plants. Annu. Rev. Plant Biol. 53: 67-107 (2002).

Demidchik V, Essah PA, Tester M. Glutamate activates cation currents in the plasma membrane of Arabidopsis root cells. Planta 219: 167-175 (2004).

Demidchik V, Shang Z, Shin R, Thompson E, Rubio L, Laohavisit A, Mortimer JC, Chivasa S, Slabas AR, Glover BJ, Schachtman DP, Shabala SN, Davies JM. Plant extracellular ATP signalling by plasma membrane NADPH oxidase and Ca2+ channels. Plant J. 58: 903-913 (2009).

Demidchik V, Tester M. Sodium fluxes through nonselective cation channels in the plasma membrane of protoplasts from Arabidopsis roots. Plant Physiol. 128: 379-387 (2002).

Demidov D, Van Damme D, Geelen D, Blattner FR, Houben A. Identification and dynamics of two classes of Aurora-like kinases in Arabidopsis and other plants. Plant Cell 17: 836-848 (2005).

Den Herder G, De Keyser A, De Rycke R, Rombauts S, Van de Velde W, Clemente MR, Verplancke C, Mergaert P, Kondorosi E, Holsters M, Goormachtig S. Seven in absentia proteins affect plant growth and nodulation in Medicago truncatula. Plant Physiol. 148: 369-382 (2008).

Denby K, Gehring C. Engineering drought and salinity tolerance in plants: lessons from genome-wide expression profiling in Arabidopsis. Trends Biotechnol. 23: 547-552 (2005).

Denby KJ, Jason LJ, Murray SL, Last RL. ups1, an Arabidopsis thaliana camalexin accumulation mutant defective in multiple defence signalling pathways. Plant J. 41: 673-684 (2005).

Denby KJ, Kumar P, Kliebenstein DJ. Identification of Botrytis cinerea susceptibility loci in Arabidopsis thaliana. Plant J. 38: 473-486 (2004).

Denekamp M, Smeekens SC. Integration of wounding and osmotic stress signals determines the expression of the AtMYB102 transcription factor gene. Plant Physiol. 132: 1415-1423 (2003).

Deng W, Liu C, Pei Y, Deng X, Niu L, Cao X. Involvement of the histone acetyltransferase AtHAC1 in the regulation of flowering time via repression of FLOWERING LOCUS C in Arabidopsis. Plant Physiol. 143: 1660-1668 (2007).

Deng W, Luo K, Li D, Zheng X, Wei X, Smith W, Thammina C, Lu L, Li Y, Pei Y. Overexpression of an Arabidopsis magnesium transport gene, AtMGT1, in Nicotiana benthamiana confers Al tolerance. J. Exp. Bot. 57: 4235-4243 (2006).

Deng X, Phillips J, Brautigam A, Engstrom P, Johannesson H, Ouwerkerk PB, Ruberti I, Salinas J, Vera P, Iannacone R, Meijer AH, Bartels D. A homeodomain leucine zipper gene from Craterostigma plantagineum regulates abscisic acid responsive gene expression and physiological responses. Plant Mol. Biol. 61: 469-489 (2006).

Dennison KL, Robertson WR, Lewis BD, Hirsch RE, Sussman MR, Spalding EP. Functions of AKT1 and AKT2 potassium channels determined by studies of single and double mutants of Arabidopsis. Plant Physiol. 127: 1012-1019 (2001).

Dennison KL, Spalding EP. Glutamate-gated calcium fluxes in Arabidopsis. Plant Physiol. 124: 1511-1514 (2000).

Deprost D, Yao L, Sormani R, Moreau M, Leterreux G, Nicolaď M, Bedu M, Robaglia C, Meyer C. The Arabidopsis TOR kinase links plant growth, yield, stress resistance and mRNA translation. EMBO Rep. 8: 864-870 (2007).

Depuydt S, De Veylder L, Holsters M, Vereecke D. Eternal youth, the fate of developing Arabidopsis leaves upon Rhodococcus fascians infection. Plant Physiol. 149: 1387-1398 (2009).

Depuydt S, Trenkamp S, Fernie AR, Elftieh S, Renou JP, Vuylsteke M, Holsters M, Vereecke D. An integrated genomics approach to define niche establishment by Rhodococcus fascians. Plant Physiol. 149: 1366-1386 (2009).

Derbyshire P, Drea S, Shaw PJ, Doonan JH, Dolan L. Proximal-distal patterns of transcription factor gene expression during Arabidopsis root development. J. Exp. Bot. 59: 235-245 (2008).

DeRidder BP, Dixon DP, Beussman DJ, Edwards R, Goldsbrough PB. Induction of glutathione S-transferases in Arabidopsis by herbicide safeners. Plant Physiol. 130: 1497-1505 (2002).

DeRidder BP, Goldsbrough PB. Organ-specific expression of glutathione S-transferases and the efficacy of herbicide safeners in Arabidopsis. Plant Physiol. 140: 167-175 (2006).

Dervinis C, Clark DG, Barrett JE, Nell TA. Effect of pollination and exogenous ethylene on accumulation of ETR1 homologue transcripts during flower petal abscission in geranium (Pelargonium x hortorum L.H. Bailey). Plant Mol. Biol. 42: 847-856 (2000).

Desbrosses G, Josefsson C, Rigas S, Hatzopoulos P, Dolan L. AKT1 and TRH1 are required during root hair elongation in Arabidopsis. J. Exp. Bot. 54: 781-788 (2003).

Desbrosses-Fonrouge AG, Voigt K, Schroder A, Arrivault S, Thomine S, Kramer U. Arabidopsis thaliana MTP1 is a Zn transporter in the vacuolar membrane which mediates Zn detoxification and drives leaf Zn accumulation. FEBS Lett. 579: 4165-4174 (2005).

Desel C, Hubbermann EM, Schwarz K, Krupinska K. Nitration of gamma-tocopherol in plant tissues. Planta 226: 1311-1322 (2007).

Desfeux C, Clough SJ, Bent AF. Female reproductive tissues are the primary target of Agrobacterium-mediated transformation by the Arabidopsis floral-dip method. Plant Physiol. 123: 895-904 (2000).

Desgagne-Penix I, Eakanunkul S, Coles JP, Phillips AL, Hedden P, Sponsel VM. The auxin transport inhibitor response 3 (tir3) allele of BIG and auxin transport inhibitors affect the gibberellin status of Arabidopsis. Plant J. 41: 231-242 (2005).

Desgagne-Penix I, Sponsel VM. Expression of gibberellin 20-oxidase1 (AtGA20ox1) in Arabidopsis seedlings with altered auxin status is regulated at multiple levels. J. Exp. Bot. 59: 2057-2070 (2008).

Desikan R, A -H -Mackerness S, Hancock JT, Neill SJ. Regulation of the Arabidopsis transcriptome by oxidative stress. Plant Physiol. 127: 159-72 (2001).

Desikan R, Cheung MK, Bright J, Henson D, Hancock JT, Neill SJ. ABA, hydrogen peroxide and nitric oxide signalling in stomatal guard cells. J. Exp. Bot. 55: 205-212 (2004).

Desikan R, Griffiths R, Hancock J, Neill S. A new role for an old enzyme: nitrate reductase-mediated nitric oxide generation is required for abscisic acid-induced stomatal closure in Arabidopsis thaliana. Proc. Natl. Acad. Sci. U.S.A. 99: 16314-16318 (2002).

Desikan R, Hancock JT, Coffey MJ, Neill SJ. Generation of active oxygen in elicited cells of Arabidopsis thaliana is mediated by a NADPH oxidase-like enzyme. FEBS Lett. 382: 213-217 (1996).

Desikan R, Last K, Harrett-Williams R, Tagliavia C, Harter K, Hooley R, Hancock JT, Neill SJ. Ethylene-induced stomatal closure in Arabidopsis occurs via AtrbohF-mediated hydrogen peroxide synthesis. Plant J. 47: 907-916 (2006).

Desikan R, Reynolds A, Hancock JT, Neill SJ. Harpin and hydrogen peroxide both initiate programmed cell death but have differential effects on defence gene expression in Arabidopsis suspension cultures. Biochem. J. 330: 115-20 (1998).

Desimone M, Catoni E, Ludewig U, Hilpert M, Schneider A, Kunze R, Tegeder M, Frommer WB, Schumacher K. A novel superfamily of transporters for allantoin and other oxo derivatives of nitrogen heterocyclic compounds in Arabidopsis. Plant Cell 14: 847-856 (2002).

Despres B, Bouissonnie F, Wu HJ, Gomord V, Guilleminot J, Grellet F, Berger F, Delseny M, Devic M. Three SAC1-like genes show overlapping patterns of expression in Arabidopsis but are remarkably silent during embryo development. Plant J. 34: 293-306 (2003).

Despres C, Chubak C, Rochon A, Clark R, Bethune T, Desveaux D, Fobert PR. The Arabidopsis NPR1 disease resistance protein is a novel cofactor that confers redox regulation of DNA binding activity to the basic domain/leucine zipper transcription factor TGA1. Plant Cell 15: 2181-2191 (2003).

Desprez T, Vernhettes S, Fagard M, Refregier G, Desnos T, Aletti E, Py N, Pelletier S, Hofte H. Resistance against herbicide isoxaben and cellulose deficiency caused by distinct mutations in same cellulose synthase isoform CESA6. Plant Physiol. 128: 482-490 (2002).

Dessau M, Halimi Y, Erez T, Chomsky-Hecht O, Chamovitz DA, Hirsch JA. The Arabidopsis COP9 signalosome subunit 7 is a model PCI domain protein with subdomains involved in COP9 signalosome assembly. Plant Cell 20: 2815-2834 (2008).

Desveaux D, Marechal A, Brisson N. Whirly transcription factors: defense gene regulation and beyond. Trends Plant Sci. 10: 95-102 (2005).

Desvoyes B, Ramirez-Parra E, Xie Q, Chua NH, Gutierrez C. Cell type-specific role of the retinoblastoma/E2F pathway during Arabidopsis leaf development. Plant Physiol. 140: 67-80 (2006).

Dettmer J, Elo A, Helariutta Y. Hormone interactions during vascular development. Plant Mol. Biol. 69: 347-360 (2009).

Dettmer J, Hong-Hermesdorf A, Stierhof YD, Schumacher K. Vacuolar H+-ATPase activity is required for endocytic and secretory trafficking in Arabidopsis. Plant Cell 18: 715-730 (2006).

Dettmer J, Schubert D, Calvo-Weimar O, Stierhof YD, Schmidt R, Schumacher K. Essential role of the V-ATPase in male gametophyte development. Plant J. 41: 117-124 (2005).

Deuschle K, Chaudhuri B, Okumoto S, Lager I, Lalonde S, Frommer WB. Rapid metabolism of glucose detected with FRET glucose nanosensors in epidermal cells and intact roots of Arabidopsis RNA-silencing mutants. Plant Cell 18: 2314-2325 (2006).

Deuschle K, Funck D, Hellmann H, Daschner K, Binder S, Frommer WB. A nuclear gene encoding mitochondrial delta-pyrroline-5-carboxylate dehydrogenase and its potential role in protection from proline toxicity. Plant J. 27: 345-356 (2001).

Devadas SK, Raina R. Preexisting systemic acquired resistance suppresses hypersensitive response-associated cell death in Arabidopsis hrl1 mutant. Plant Physiol. 128: 1234-1244 (2002).

Devaiah BN, Karthikeyan AS, Raghothama KG. WRKY75 transcription factor is a modulator of phosphate acquisition and root development in Arabidopsis. Plant Physiol. 143: 1789-1801 (2007).

Devaiah SP, Pan X, Hong Y, Roth M, Welti R, Wang X. Enhancing seed quality and viability by suppressing phospholipase D in Arabidopsis. Plant J. 50: 950-957 (2007).

Devaiah SP, Roth MR, Baughman E, Li M, Tamura P, Jeannotte R, Welti R, Wang X. Quantitative profiling of polar glycerolipid species from organs of wild-type Arabidopsis and a phospholipase Dalpha1 knockout mutant. Phytochemistry 67: 1907-1924 (2006).

Devic M, Guilleminot J, Debeaujon I, Bechtold N, Bensaude E, Koornneef M, Pelletier G, Delseny M. The BANYULS gene encodes a DFR-like protein and is a marker of early seed coat development. Plant J. 19: 387-398 (1999).

Devlin PF, Kay SA. Cryptochromes are required for phytochrome signaling to the circadian clock but not for rhythmicity. Plant Cell 12: 2499-2510 (2000).

Devlin PF, Robson PR, Patel SR, Goosey L, Sharrock RA, Whitelam GC. Phytochrome D acts in the shade-avoidance syndrome in Arabidopsis by controlling elongation growth and flowering time. Plant Physiol. 119: 909-915 (1999).

Devlin PF, Yanovsky MJ, Kay SA. A genomic analysis of the shade avoidance response in Arabidopsis. Plant Physiol. 133: 1617-1629 (2003).

Devoto A, Ellis C, Magusin A, Chang HS, Chilcott C, Zhu T, Turner JG. Expression profiling reveals COI1 to be a key regulator of genes involved in wound- and methyl jasmonate-induced secondary metabolism, defence, and hormone interactions. Plant Mol. Biol. 58: 497-513 (2005).

Devoto A, Nieto-Rostro M, Xie D, Ellis C, Harmston R, Patrick E, Davis J, Sherratt L, Coleman M, Turner JG. COI1 links jasmonate signalling and fertility to the SCF ubiquitin-ligase complex in Arabidopsis. Plant J. 32: 457-466 (2002).

Devoto A, Turner JG. Jasmonate-regulated Arabidopsis stress signalling network. Physiol. Plant. 123: 161-172 (2005).

Devoto A, Turner JG. Regulation of jasmonate-mediated plant responses in Arabidopsis. Ann. Bot. (Lond.) 92: 329-337 (2003).

DeWald DB, Torabinejad J, Jones CA, Shope JC, Cangelosi AR, Thompson JE, Prestwich GD, Hama H. Rapid accumulation of phosphatidylinositol 4,5-bisphosphate and inositol 1,4,5-trisphosphate correlates with calcium mobilization in salt-stressed Arabidopsis. Plant Physiol. 126: 759-769 (2001).

DeWitt ND, Hong B, Sussman MR, Harper JF. Targeting of two Arabidopsis H(+)-ATPase isoforms to the plasma membrane. Plant Physiol. 112: 833-844 (1996).

DeWitt ND, Sussman MR. Immunocytological localization of an epitope-tagged plasma membrane proton pump (H(+)-ATPase) in phloem companion cells. Plant Cell 7: 2053-2067 (1995).

Dewitte W, Riou-Khamlichi C, Scofield S, Healy JM, Jacqmard A, Kilby NJ, Murray JA. Altered cell cycle distribution, hyperplasia, and inhibited differentiation in Arabidopsis caused by the D-type cyclin CYCD3. Plant Cell 15: 79-92 (2003).

Deyoung BJ, Bickle KL, Schrage KJ, Muskett P, Patel K, Clark SE. The CLAVATA1-related BAM1, BAM2 and BAM3 receptor kinase-like proteins are required for meristem function in Arabidopsis. Plant J. 45: 1-16 (2006).

Dezar CA, Fedrigo GV, Chan RL. The promoter of the sunflower HD-Zip protein gene Hahb4 directs tissue-specific expression and is inducible by water stress, high salt concentrations and ABA. Plant Sci. 169: 447-456 (2005).

Dezar CA, Gago GM, Gonzalez DH, Chan RL. Hahb-4, a sunflower homeobox-leucine zipper gene, is a developmental regulator and confers drought tolerance to Arabidopsis thaliana plants. Transgenic Res. 14: 429-440 (2005).

Dezar CA, Tioni MF, Gonzalez DH, Chan RL. Identification of three MADS-box genes expressed in sunflower capitulum. J. Exp. Bot. 54: 1637-1639 (2003).

Dhankher OP, Rosen BP, McKinney EC, Meagher RB. Hyperaccumulation of arsenic in the shoots of Arabidopsis silenced for arsenate reductase (ACR2). Proc. Natl. Acad. Sci. U.S.A. 103: 5413-5418 (2006).

Dharmasiri N, Dharmasiri S, Weijers D, Karunarathna N, Jurgens G, Estelle M. AXL and AXR1 have redundant functions in RUB conjugation and growth and development in Arabidopsis. Plant J. 52: 114-123 (2007).

Dharmasiri S, Estelle M. The role of regulated protein degradation in auxin response. Plant Mol. Biol. 49: 401-409 (2002).

Dhawan R, Luo H, Foerster AM, Abuqamar S, Du HN, Briggs SD, Mittelsten Scheid O, Mengiste T. HISTONE MONOUBIQUITINATION1 interacts with a subunit of the mediator complex and regulates defense against necrotrophic fungal pathogens in Arabidopsis. Plant Cell 21: 1000-1019 (2009).

Dhingra A, Bies DH, Lehner KR, Folta KM. Green light adjusts the plastid transcriptome during early photomorphogenic development. Plant Physiol. 142: 1256-1266 (2006).

Dhugga KS. Building the wall: genes and enzyme complexes for polysaccharide synthases. Curr. Opin. Plant Biol. 4: 488-493 (2001).

Di Giacomo E, Sestili F, Iannelli MA, Testone G, Mariotti D, Frugis G. Characterization of KNOX genes in Medicago truncatula. Plant Mol. Biol. 67: 135-150 (2008).

Diatloff E, Geiger D, Shang L, Hedrich R, Roberts SK. Differential regulation of K+ channels in Arabidopsis epidermal and stelar root cells. Plant Cell Environ. 27: 980-990 (2004).

Diatloff E, Roberts M, Sanders D, Roberts SK. Characterization of anion channels in the plasma membrane of Arabidopsis epidermal root cells and the identification of a citrate-permeable channel induced by phosphate starvation. Plant Physiol. 136: 4136-4149 (2004).

Diaz C, Lemaitre T, Christ A, Azzopardi M, Kato Y, Sato F, Morot-Gaudry JF, Le Dily F, Masclaux-Daubresse C. Nitrogen recycling and remobilisation are differentially controlled by leaf senescence and development stage in Arabidopsis thaliana under low nitrogen nutrition. Plant Physiol. 147: 1437-1449 (2008).

Diaz C, Purdy S, Christ A, Morot-Gaudry JF, Wingler A, Masclaux-Daubresse C. Characterization of markers to determine the extent and variability of leaf senescence in Arabidopsis. A metabolic profiling approach. Plant Physiol. 138: 898-908 (2005).

Diaz M, Achkor H, Titarenko E, Martinez MC. The gene encoding glutathione-dependent formaldehyde dehydrogenase/GSNO reductase is responsive to wounding, jasmonic acid and salicylic acid. FEBS Lett. 543: 136-139 (2003).

Diaz-Pendon JA, Li F, Li WX, Ding SW. Suppression of antiviral silencing by cucumber mosaic virus 2b protein in Arabidopsis is associated with drastically reduced accumulation of three classes of viral small interfering RNAs. Plant Cell 19: 2053-2063 (2007).

Diaz-Riquelme J, Lijavetzky D, Martinez-Zapater JM, Carmona MJ. Genome-wide analysis of MIKCC-type MADS-box genes in grapevine. Plant Physiol. 149: 354-369 (2009).

Didierjean L, Gondet L, Perkins R, Lau SM, Schaller H, O'Keefe DP, Werck-Reichhart D. Engineering herbicide metabolism in tobacco and Arabidopsis with CYP76B1, a cytochrome P450 enzyme from Jerusalem artichoke. Plant Physiol. 130: 179-189 (2002).

DiDonato RJ Jr, Roberts LA, Sanderson T, Eisley RB, Walker EL. Arabidopsis Yellow Stripe-Like2 (YSL2): a metal-regulated gene encoding a plasma membrane transporter of nicotianamine-metal complexes. Plant J. 39: 403-414 (2004).

DiDonato RJ, Arbuckle E, Buker S, Sheets J, Tobar J, Totong R, Grisafi P, Fink GR, Celenza JL. Arabidopsis ALF4 encodes a nuclear-localized protein required for lateral root formation. Plant J. 37: 340-353 (2004).

Diebold R, Schuster J, Daschner K, Binder S. The branched-chain amino acid transaminase gene family in Arabidopsis encodes plastid and mitochondrial proteins. Plant Physiol. 129: 540-550 (2002).

Diego LB, Berdasco M, Fraga MF, Canal MJ, Rodriguez R, Castresana C. A Pinus radiata AAA-ATPase, the expression of which increases with tree ageing. J. Exp. Bot. 55: 1597-1599 (2004).

Diepold A, Li G, Lennarz WJ, Nurnberger T, Brunner F. The Arabidopsis AtPNG1 gene encodes a peptide: N-glycanase. Plant J. 52: 94-104 (2007).

Diet A, Link B, Seifert GJ, Schellenberg B, Wagner U, Pauly M, Reiter WD, Ringli C. The Arabidopsis root hair cell wall formation mutant lrx1 is suppressed by mutations in the RHM1 gene encoding a UDP-L-rhamnose synthase. Plant Cell 18: 1630-161 (2006).

Dieterle M, Bauer D, Buche C, Krenz M, Schafer E, Kretsch T. A new type of mutation in phytochrome A causes enhanced light sensitivity and alters the degradation and subcellular partitioning of the photoreceptor. Plant J. 41: 146-161 (2005).

Dieterle M, Buche C, Schafer E, Kretsch T. Characterization of a novel non-constitutive photomorphogenic cop1 allele. Plant Physiol. 133: 1557-1564 (2003).

Dieterle M, Thomann A, Renou JP, Parmentier Y, Cognat V, Lemonnier G, Muller R, Shen WH, Kretsch T, Genschik P. Molecular and functional characterization of Arabidopsis Cullin 3A. Plant J. 41: 386-399 (2005).

Dietrich CR, Han G, Chen M, Berg RH, Dunn TM, Cahoon EB. Loss-of-function mutations and inducible RNAi suppression of Arabidopsis LCB2 genes reveal the critical role of sphingolipids in gametophytic and sporophytic cell viability. Plant J. 54: 284-298 (2008).

Dietrich D, Hammes U, Thor K, Suter-Grotemeyer M, Fluckiger R, Slusarenko AJ, Ward JM, Rentsch D. AtPTR1, a plasma membrane peptide transporter expressed during seed germination and in vascular tissue of Arabidopsis. Plant J. 40: 488-499 (2004).

Dietrich D, Schmuths H, De Marcos Lousa C, Baldwin JM, Baldwin SA, Baker A, Theodoulou FL, Holdsworth MJ. Mutations in the Arabidopsis peroxisomal ABC transporter COMATOSE allow differentiation between multiple functions in planta: insights from an allelic series. Mol. Biol. Cell 20: 530-543 (2009).

Dietrich R, Ploss K, Heil M. Growth responses and fitness costs after induction of pathogen resistance depend on environmental conditions. Plant Cell Environ. 28: 211-222 (2005).

Dietrich R, Ploss K, Heil M. Constitutive and induced resistance to pathogens in Arabidopsis thaliana depends on nitrogen supply. Plant Cell Environ. 27: 896-906 (2004).

Dietz KJ, Horling F, Konig J, Baier M. The function of the chloroplast 2-cysteine peroxiredoxin in peroxide detoxification and its regulation. J. Exp. Bot. 53: 1321-1329 (2002).

Dietz KJ, Jacob S, Oelze ML, Laxa M, Tognetti V, de Miranda SM, Baier M, Finkemeier I. The function of peroxiredoxins in plant organelle redox metabolism. J. Exp. Bot. 57: 1697-1709 (2006).

Dievart A, Clark SE. Using mutant alleles to determine the structure and function of leucine-rich repeat receptor-like kinases. Curr. Opin. Plant Biol. 6: 507-516 (2003).

Dievart A, Dalal M, Tax FE, Lacey AD, Huttly A, Li J, Clark SE. CLAVATA1 dominant-negative alleles reveal functional overlap between multiple receptor kinases that regulate meristem and organ development. Plant Cell 15: 1198-1211 (2003).

Dijken AJ, Schluepmann H, Smeekens SC. Arabidopsis trehalose-6-phosphate synthase 1 is essential for normal vegetative growth and transition to flowering. Plant Physiol. 135: 969-977 (2004).

Dill A, Thomas SG, Hu J, Steber CM, Sun TP. The Arabidopsis F-box protein SLEEPY1 targets gibberellin signaling repressors for gibberellin-induced degradation. Plant Cell 16: 1392-1405 (2004).

Dimou M, Flemetakis E, Delis C, Aivalakis G, Spyropoulos KG, Katinakis P. Genes coding for a putative cell-wall invertase and two putative monosaccharide/H+ transporters are expressed in roots of etiolated Glycine max seedlings. Plant Sci. 169: 798-804 (2005).

Dinant S, Clark AM, Zhu Y, Vilaine F, Palauqui JC, Kusiak C, Thompson GA. Diversity of the superfamily of phloem lectins (Phloem protein 2) in angiosperms. Plant Physiol. 131: 114-128 (2003).

Dinant S, Ripoll C, Pieper M, David C. Phloem specific expression driven by wheat dwarf geminivirus V-sense promoter in transgenic dicotyledonous species. Physiol. Plant. 121: 108-116 (2004).

Ding L, Pandey S, Assmann SM. Arabidopsis extra-large G proteins (XLGs) regulate root morphogenesis. Plant J. 53: 248-263 (2008).

Ding L, Zhu JK. Reduced Na+ uptake in the NaCl-hypersensitive sos1 mutant of Arabidopsis thaliana. Plant Physiol. 113: 795-799 (1997).

Ding L, Zhu JK. A role for arabinogalactan-proteins in root epidermal cell expansion. Planta 203: 289-294 (1997).

Ding X, Iwasaki I, Kitagawa Y. Overexpression of a lily PIP1 gene in tobacco increased the osmotic water permeability of leaf cells. Plant Cell Environ. 27: 177-186 (2004).

Ding Y, Wang X, Su L, Zhai J, Cao S, Zhang D, Liu C, Bi Y, Qian Q, Cheng Z, Chu C, Cao X. SDG714, a histone H3K9 methyltransferase, is involved in Tos17 DNA methylation and transposition in rice. Plant Cell 19: 9-22 (2007).

Ding YH, Liu NY, Tang ZS, Liu J, Yang WC. Arabidopsis GLUTAMINE-RICH PROTEIN23 is essential for early embryogenesis and encodes a novel nuclear PPR motif protein that interacts with RNA polymerase II subunit III. Plant Cell 18: 815-830 (2006).

Ding Z, Millar AJ, Davis AM, Davis SJ. TIME FOR COFFEE encodes a nuclear regulator in the Arabidopsis thaliana circadian clock. Plant Cell 19: 1522-1536 (2007).

Dinkins R, Reddy MS, Leng M, Collins GB. Overexpression of the Arabidopsis thaliana MinD1 gene alters chloroplast size and number in transgenic tobacco plants. Planta 214: 180-188 (2001).

Dinkins RD, Bandaranayake H, Baeza L, Griffiths AJ, Green BR. hcf5, a nuclear photosynthetic electron transport mutant of Arabidopsis thaliana with a pleiotropic effect on chloroplast gene expression. Plant Physiol. 113: 1023-1031 (1997).

Dinkins RD, Majee SM, Nayak NR, Martin D, Xu Q, Belcastro MP, Houtz RL, Beach CM, Downie AB. Changing transcriptional initiation sites and alternative 5'- and 3'-splice site selection of the first intron deploys Arabidopsis protein isoaspartyl methyltransferase2 variants to different subcellular compartments. Plant J. 55: 1-13 (2008).

Dion E, Li L, Jean M, Belzile F. An Arabidopsis MLH1 mutant exhibits reproductive defects and reveals a dual role for this gene in mitotic recombination. Plant J. 51: 431-440 (2007).

Dirk LM, Williams MA, Houtz RL. Eukaryotic peptide deformylases. Nuclear-encoded and chloroplast-targeted enzymes in Arabidopsis. Plant Physiol. 127: 97-107 (2001).

Dissmeyer N, Nowack MK, Pusch S, Stals H, Inze D, Grini PE, Schnittger A. T-loop phosphorylation of Arabidopsis CDKA;1 is required for its function and can be partially substituted by an aspartate residue. Plant Cell 19: 972-985 (2007).

Divol F, Vilaine F, Thibivilliers S, Kusiak C, Sauge MH, Dinant S. Involvement of the xyloglucan endotransglycosylase/hydrolases encoded by celery XTH1 and Arabidopsis XTH33 in the phloem response to aphids. Plant Cell Environ. 30: 187-201 (2007).

Dixit R, Cyr R. Encounters between dynamic cortical microtubules promote ordering of the cortical array through angle-dependent modifications of microtubule behavior. Plant Cell 16: 3274-3284 (2004).

Dixon DP, Edwards R. Selective binding of glutathione conjugates of fatty acid derivatives by plant glutathione transferases. J. Biol. Chem. 284: 21249-21256 (2009).

Dixon DP, Hawkins T, Hussey PJ, Edwards R. Enzyme activities and subcellular localization of members of the Arabidopsis glutathione transferase superfamily. J. Exp. Bot. 60: 1207-1218 (2009).

Dixon DP, Skipsey M, Grundy NM, Edwards R. Stress-induced protein S-glutathionylation in Arabidopsis. Plant Physiol. 138: 2233-2244 (2005).

Djakovic-Petrovic T, de Wit M, Voesenek LA, Pierik R. DELLA protein function in growth responses to canopy signals. Plant J. 51: 117-126 (2007).

Djerbi S, Lindskog M, Arvestad L, Sterky F, Teeri TT. The genome sequence of black cottonwood (Populus trichocarpa) reveals 18 conserved cellulose synthase (CesA) genes. Planta 221: 739-746 (2005).

Do CT, Pollet B, Thevenin J, Sibout R, Denoue D, Barriere Y, Lapierre C, Jouanin L. Both caffeoyl coenzyme A 3-O-methyltransferase 1 and caffeic acid O-methyltransferase 1 are involved in redundant functions for lignin, flavonoids and sinapoyl malate biosynthesis in Arabidopsis. Planta 226: 1117-1129 (2007).

Doczi R, Csanaki C, Banfalvi Z. Expression and promoter activity of the desiccation-specific Solanum tuberosum gene, StDS2. Plant Cell Environ. 25: 1197-1203 (2002).

Dodd AN, Gardner MJ, Hotta CT, Hubbard KE, Dalchau N, Love J, Assie JM, Robertson FC, Jakobsen MK, Goncalves J, Sanders D, Webb AA. The Arabidopsis circadian clock incorporates a cADPR-based feedback loop. Science 318: 1789-1792 (2007).

Dodd AN, Love J, Webb AA. The plant clock shows its metal: circadian regulation of cytosolic free Ca(2+). Trends Plant Sci. 10: 15-21 (2005).

Dodd AN, Salathia N, Hall A, Kevei E, Toth R, Nagy F, Hibberd JM, Millar AJ, Webb AA. Plant circadian clocks increase photosynthesis, growth, survival, and competitive advantage. Science 309: 630-633 (2005).

Doering-Saad C, Newbury HJ, Couldridge CE, Bale JS, Pritchard J. A phloem-enriched cDNA library from Ricinus: insights into phloem function. J. Exp. Bot. 57: 3183-3193 (2006).

Doerner P. Phosphate starvation signaling: a threesome controls systemic P(i) homeostasis. Curr. Opin. Plant Biol. 11: 536-540 (2008).

Doherty CJ, Van Buskirk HA, Myers SJ, Thomashow MF. Roles for Arabidopsis CAMTA transcription factors in cold-regulated gene expression and freezing tolerance. Plant Cell 21: 972-984 (2009).

Dohm JC, Lange C, Reinhardt R, Himmelbauer H. Haplotype divergence in Beta vulgaris and microsynteny with sequenced plant genomes. Plant J. 57: 14-26 (2009).

Dohmann EM, Kuhnle C, Schwechheimer C. Loss of the CONSTITUTIVE PHOTOMORPHOGENIC9 signalosome subunit 5 is sufficient to cause the cop/det/fus mutant phenotype in Arabidopsis. Plant Cell 17: 1967-1978 (2005).

Dohmoto M, Sano J, Tsunoda H, Yamaguchi K. Structural analysis of the TNIT4 genes encoding nitrilase-like protein from tobacco. DNA Res. 6: 313-317 (1999).

Dohmoto M, Tsunoda H, Isaji G, Chiba R, Yamaguchi K. Genes encoding nitrilase-like proteins from tobacco. DNA Res. 7: 283-289 (2000).

Doi M, Shigenaga A, Emi T, Kinoshita T, Shimazaki K. A transgene encoding a blue-light receptor, phot1, restores blue-light responses in the Arabidopsis phot1 phot2 double mutant. J. Exp. Bot. 55: 517-523 (2004).

Dojcinovic D, Krosting J, Harris AJ, Wagner DJ, Rhoads DM. Identification of a region of the Arabidopsis AtAOX1a promoter necessary for mitochondrial retrograde regulation of expression. Plant Mol. Biol. 58: 159-175 (2005).

Dolan L. Positional information and mobile transcriptional regulators determine cell pattern in the Arabidopsis root epidermis. J. Exp. Bot. 57: 51-54 (2006).

Dolan L. How and where to build a root hair. Curr. Opin. Plant Biol. 4: 550-554 (2001).

Dolferus R, Jacobs M, Peacock WJ, Dennis ES. Differential interactions of promoter elements in stress responses of the Arabidopsis Adh gene. Plant Physiol. 105: 1075-1087 (1994).

Dolferus R, Klok EJ, Delessert C, Wilson S, Ismond KP, Good AG, Peacock WJ, Dennis ES. Enhancing the anaerobic response. Ann. Bot. (Lond.) 91: 111-117 (2003).

Dolferus R, Osterman JC, Peacock WJ, Dennis ES. Cloning of the Arabidopsis and rice formaldehyde dehydrogenase genes: implications for the origin of plant ADH enzymes. Genetics 146: 1131-1141 (1997).

Dombrecht B, Xue GP, Sprague SJ, Kirkegaard JA, Ross JJ, Reid JB, Fitt GP, Sewelam N, Schenk PM, Manners JM, Kazan K. MYC2 differentially modulates diverse jasmonate-dependent functions in Arabidopsis. Plant Cell 19: 2225-2245 (2007).

Dominguez MJ, Gutierrez F, Leon R, Vilchez C, Vega JM, Vigara J. Cadmium increases the activity levels of glutamate dehydrogenase and cysteine synthase in Chlamydomonas reinhardtii. Plant Physiol. Biochem. 41: 828-832 (2003).

Donaldson L, Ludidi N, Knight MR, Gehring C, Denby K. Salt and osmotic stress cause rapid increases in Arabidopsis thaliana cGMP levels. FEBS Lett. 569: 317-320 (2004).

Dong B, Rengel Z, Delhaize E. Uptake and translocation of phosphate by pho2 mutant and wild-type seedlings of Arabidopsis thaliana. Planta 205: 251-256 (1998).

Dong B, Ryan PR, Rengel Z, Delhaize E. Phosphate uptake in Arabidopsis thaliana: dependence of uptake on the expression of transporter genes and internal phosphate concentrations. Plant Cell Environ. 22: 1455-1461 (1999).

Dong CH, Rivarola M, Resnick JS, Maggin BD, Chang C. Subcellular co-localization of Arabidopsis RTE1 and ETR1 supports a regulatory role for RTE1 in ETR1 ethylene signaling. Plant J. 53: 275-286 (2008).

Dong G, Ni Z, Yao Y, Nie X, Sun Q. Wheat Dof transcription factor WPBF interacts with TaQM and activates transcription of an alpha-gliadin gene during wheat seed development. Plant Mol. Biol. 63: 73-84 (2007).

Dong H, Deng Y, Mu J, Lu Q, Wang Y, Xu Y, Chu C, Chong K, Lu C, Zuo J. The Arabidopsis Spontaneous Cell Death1 gene, encoding a zeta-carotene desaturase essential for carotenoid biosynthesis, is involved in chloroplast development, photoprotection and retrograde signalling. Cell. Res. 17: 458-470 (2007).

Dong HP, Peng J, Bao Z, Meng X, Bonasera JM, Chen G, Beer SV, Dong H. Downstream divergence of the ethylene signaling pathway for harpin-stimulated Arabidopsis growth and insect defense. Plant Physiol. 136: 3628-3638 (2004).

Dong HP, Yu H, Bao Z, Guo X, Peng J, Yao Z, Chen G, Qu S, Dong H. The ABI2-dependent abscisic acid signalling controls HrpN-induced drought tolerance in Arabidopsis. Planta 221: 313-327 (2005).

Dong J, Keller WA, Yan W, Georges F. Gene expression at early stages of Brassica napus seed development as revealed by transcript profiling of seed-abundant cDNAs. Planta 218: 483-491 (2004).

Dong J, Kim ST, Lord EM. Plantacyanin plays a role in reproduction in Arabidopsis. Plant Physiol. 138: 778-789 (2005).

Dong L, Wang L, Zhang Y, Zhang Y, Deng X, Xue Y. An auxin-inducible F-box protein CEGENDUO negatively regulates auxin-mediated lateral root formation in Arabidopsis. Plant Mol. Biol. 60: 599-615 (2006).

Dong Q, Lawrence CJ, Schlueter SD, Wilkerson MD, Kurtz S, Lushbough C, Brendel V. Comparative plant genomics resources at PlantGDB. Plant Physiol. 139: 610-618 (2005).

Dong X. NPR1, all things considered. Curr. Opin. Plant Biol. 7: 547-552 (2004).

Dong X, Braun EL, Grotewold E. Functional conservation of plant secondary metabolic enzymes revealed by complementation of Arabidopsis flavonoid mutants with maize genes. Plant Physiol. 127: 46-57 (2001).

Dong X, Hong Z, Chatterjee J, Kim S, Verma DP. Expression of callose synthase genes and its connection with Npr1 signaling pathway during pathogen infection. Planta 229: 87-98 (2008).

Dong X, Hong Z, Sivaramakrishnan M, Mahfouz M, Verma DP. Callose synthase (CalS5) is required for exine formation during microgametogenesis and for pollen viability in Arabidopsis. Plant J. 42: 315-328 (2005).

Dong YH, Yao JL, Atkinson RG, Putterill JJ, Morris BA, Gardner RC. MDH1: an apple homeobox gene belonging to the BEL1 family. Plant Mol. Biol. 42: 623-633 (2000).

Dong ZC, Zhao Z, Liu CW, Luo JH, Yang J, Huang WH, Hu XH, Wang TL, Luo D. Floral patterning in Lotus japonicus. Plant Physiol. 137: 1272-1282 (2005).

Donson J, Fang Y, Espiritu-Santo G, Xing W, Salazar A, Miyamoto S, Armendarez V, Volkmuth W. Comprehensive gene expression analysis by transcript profiling. Plant Mol. Biol. 48: 75-97 (2002).

Dorcey E, Urbez C, Blazquez MA, Carbonell J, Perez-Amador MA. Fertilization-dependent auxin response in ovules triggers fruit development through the modulation of gibberellin metabolism in Arabidopsis. Plant J. 58: 318-332 (2009).

Dormann P. Functional diversity of tocochromanols in plants. Planta 225: 269-276 (2007).

Dormann P, Hoffmann-Benning S, Balbo I, Benning C. Isolation and characterization of an Arabidopsis mutant deficient in the thylakoid lipid digalactosyl diacylglycerol. Plant Cell 7: 1801-1810 (1995).

Dormann P, Voelker TA, Ohlrogge JB. Accumulation of palmitate in Arabidopsis mediated by the acyl-acyl carrier protein thioesterase FATB1. Plant Physiol. 123: 637-644 (2000).

Dornelas MC, Rodriguez AP. The rubber tree (Hevea brasiliensis Muell. Arg.) homologue of the LEAFY/FLORICAULA gene is preferentially expressed in both male and female floral meristems. J. Exp. Bot. 56: 1965-1974 (2005).

Dornelas MC, Rodriguez AP. The tropical cedar tree (Cedrela fissilis Vell., Meliaceae) homolog of the Arabidopsis LEAFY gene is expressed in reproductive tissues and can complement Arabidopsis leafy mutants. Planta 223: 306-314 (2006).

Douce R, Neuburger M. Biochemical dissection of photorespiration. Curr. Opin. Plant Biol. 2: 214-222 (1999).

Douchkov D, Gryczka C, Stephan UW, Hell R, Baumlein H. Ectopic expression of nicotianamine synthase genes results in improved iron accumulation and increased nickel tolerance in transgenic tobacco. Plant Cell Environ. 28: 365-374 (2005).

Douglas Grubb C, Zipp BJ, Ludwig-Muller J, Masuno MN, Molinski TF, Abel S. Arabidopsis glucosyltransferase UGT74B1 functions in glucosinolate biosynthesis and auxin homeostasis. Plant J. 40: 893-908 (2004).

Douglas P, Moorhead G, Hong Y, Morrice N, MacKintosh C. Purification of a nitrate reductase kinase from Spinacea oleracea leaves, and its identification as a calmodulin-domain protein kinase. Planta 206: 435-442 (1998).

Douglas P, Pigaglio E, Ferrer A, Halfords NG, MacKintosh C. Three spinach leaf nitrate reductase-3-hydroxy-3-methylglutaryl-CoA reductase kinases that are required by reversible phosphorylation and/or Ca2+ ions. Biochem. J. 325: 101-109 (1997).

Dowdle J, Ishikawa T, Gatzek S, Rolinski S, Smirnoff N. Two genes in Arabidopsis thaliana encoding GDP-L-galactose phosphorylase are required for ascorbate biosynthesis and seedling viability. Plant J. 52: 673-689 (2007).

Downes BP, Saracco SA, Lee SS, Crowell DN, Vierstra RD. MUBs, a family of ubiquitin-fold proteins that are plasma membrane-anchored by prenylation. J. Biol. Chem. 281: 27145-27157 (2006).

Downes BP, Stupar RM, Gingerich DJ, Vierstra RD. The HECT ubiquitin-protein ligase (UPL) family in Arabidopsis: UPL3 has a specific role in trichome development. Plant J. 35: 729-742 (2003).

Doyle EA, Lane AM, Sides JM, Mudgett MB, Monroe JD. An alpha-amylase (At4g25000) in Arabidopsis leaves is secreted and induced by biotic and abiotic stress. Plant Cell Environ. 30: 388-398 (2007).

Doyle MR, Bizzell CM, Keller MR, Michaels SD, Song J, Noh YS, Amasino RM. HUA2 is required for the expression of floral repressors in Arabidopsis thaliana. Plant J. 41: 376-385 (2005).

Draborg H, Villadsen D, Nielsen TH. Transgenic Arabidopsis plants with decreased activity of fructose-6-phosphate,2-kinase/fructose-2,6-bisphosphatase have altered carbon partitioning. Plant Physiol. 126: 750-758 (2001).

Drager DB, Desbrosses-Fonrouge AG, Krach C, Chardonnens AN, Meyer RC, Saumitou-Laprade P, Kramer U. Two genes encoding Arabidopsis halleri MTP1 metal transport proteins co-segregate with zinc tolerance and account for high MTP1 transcript levels. Plant J. 39: 425-439 (2004).

Drakakaki G, Zabotina O, Delgado I, Robert S, Keegstra K, Raikhel N. Arabidopsis RGP1 and RGP2 are essential for pollen development. Plant Physiol. 142: 1480-1492 (2006).

Draper J, Mur LA, Jenkins G, Ghosh-Biswas GC, Bablak P, Hasterok R, Routledge AP. Brachypodium distachyon. A new model system for functional genomics in grasses. Plant Physiol. 127: 1539-1555 (2001).

Dray E, Siaud N, Dubois E, Doutriaux MP. Interaction between Arabidopsis Brca2 and its partners: Rad51, Dmc1 and Dss. Plant Physiol. 140: 1059-1069 (2006).

Draye X. Consequences of root growth kinetics and vascular structure on the distribution of lateral roots. Plant Cell Environ. 25: 1463-1474 (2002).

Drea S, Leader DJ, Arnold BC, Shaw P, Dolan L, Doonan JH. Systematic spatial analysis of gene expression during wheat caryopsis development. Plant Cell 17: 2172-2185 (2005).

Drea SC, Lao NT, Wolfe KH, Kavanagh TA. Gene duplication, exon gain and neofunctionalization of OEP16-related genes in land plants. Plant J. 46: 723-735 (2006).

Drea SC, Mould RM, Hibberd JM, Gray JC, Kavanagh TA. Tissue-specific and developmental-specific expression of an Arabidopsis thaliana gene encoding the lipoamide dehydrogenase component of the plastid pyruvate dehydrogenase complex. Plant Mol. Biol. 46: 705-715 (2001).

Dreher KA, Brown J, Saw RE, Callis J. The Arabidopsis Aux/IAA protein family has diversified in degradation and auxin responsiveness. Plant Cell 18: 699-714 (2006).

Dreni L, Jacchia S, Fornara F, Fornari M, Ouwerkerk PB, An G, Colombo L, Kater MM. The D-lineage MADS-box gene OsMADS13 controls ovule identity in rice. Plant J. 52: 690-699 (2007).

Drenkard E, Richter BG, Rozen S, Stutius LM, Angell NA, Mindrinos M, Cho RJ, Oefner PJ, Davis RW, Ausubel FM. A simple procedure for the analysis of single nucleotide polymorphisms facilitates map-based cloning in Arabidopsis. Plant Physiol. 124: 1483-1492 (2000).

Dresselhaus T, Amien S, Marton M, Strecke A, Brettschneider R, Cordts S. TRANSPARENT LEAF AREA1 encodes a secreted proteolipid required for anther maturation, morphogenesis, and differentiation during leaf development in maize. Plant Cell 17: 730-745 (2005).

Dreyer I, Antunes S, Hoshi T, Muller-Rober B, Palme K, Pongs O, Reintanz B, Hedrich R. Plant K+ channel alpha-subunits assemble indiscriminately. Biophys. J. 72: 2143-2150 (1997).

Dreyer I, Becker D, Bregante M, Gambale F, Lehnen M, Palme K, Hedrich R. Single mutations strongly alter the K+-selective pore of the K(in) channel KAT1. FEBS Lett. 430: 370-376 (1998).

Droillard MJ, Boudsocq M, Barbier-Brygoo H, Lauriere C. Involvement of MPK4 in osmotic stress response pathways in cell suspensions and plantlets of Arabidopsis thaliana: activation by hypoosmolarity and negative role in hyperosmolarity tolerance. FEBS Lett. 574: 42-48 (2004).

Droillard MJ, Boudsocq M, Barbler-Brygoo H, Lauriere C. Different protein kinase families are activated by osmotic stresses in Arabidopsis thaliana cell suspensions - Involvement of the MAP kinases AtMPK3 and AtMPK6. FEBS Lett. 527: 43-50 (2002).

Drozdowicz YM, Kissinger JC, Rea PA. AVP2, a sequence-divergent, K(+)-insensitive H(+)-translocating inorganic pyrophosphatase from Arabidopsis. Plant Physiol. 123: 353-362 (2000).

Drykova D, Cenklova V, Sulimenko V, Volc J, Draber P, Binarova P. Plant gamma-tubulin interacts with alphabeta-tubulin dimers and forms membrane-associated complexes. Plant Cell 15: 465-480 (2003).

Du J, Huang YP, Xi J, Cao MJ, Ni WS, Chen X, Zhu JK, Oliver DJ, Xiang CB. Functional gene-mining for salt tolerance genes with the power of Arabidopsis. Plant J. 56: 653-664 (2008).

du Jardin P, Rojas-Beltran J, Gebhardt C, Brasseur R. Molecular cloning and characterization of a soluble inorganic pyrophosphatase in potato. Plant Physiol. 109: 853-860 (1995).

Du L, Poovaiah BW. A novel family of Ca2+/calmodulin-binding proteins involved in transcriptional regulation: interaction with fsh/Ring3 class transcription activators. Plant Mol. Biol. 54: 549-569 (2004).

Duan GL, Zhu YG, Tong YP, Cai C, Kneer R. Characterization of arsenate reductase in the extract of roots and fronds of chinese brake fern, an arsenic hyperaccumulator. Plant Physiol. 138: 461-469 (2005).

Duan H, Huang MY, Palacio K, Schuler MA. Variations in CYP74B2 (hydroperoxide lyase) gene expression differentially affect hexenal signaling in the Columbia and Landsberg erecta ecotypes of Arabidopsis. Plant Physiol. 139: 1529-1544 (2005).

Duan H, Schuler MA. Differential expression and evolution of the Arabidopsis CYP86A subfamily. Plant Physiol. 137: 1067-1081 (2005).

Duan K, Ding X, Zhang Q, Zhu H, Pan A, Huang J. AtCopeg1, the unique gene originated from AtCopia95 retrotransposon family, is sensitive to external hormones and abiotic stresses. Plant Cell Rep. 27: 1065-1073 (2008).

Duan K, Yi K, Dang L, Huang H, Wu W, Wu P. Characterization of a sub-family of Arabidopsis genes with the SPX domain reveals their diverse functions in plant tolerance to phosphorus starvation. Plant J. 54: 965-975 (2008).

Duan QH, Wang DH, Xu ZH, Bai SN. Stamen development in Arabidopsis is arrested by organ-specific overexpression of a cucumber ethylene synthesis gene CsACO2. Planta 228: 537-543 (2008).

Duan X, Song Y, Yang A, Zhang J. The transgene pyramiding tobacco with betaine synthesis and heterologous expression of AtNHX1 is more tolerant to salt stress than either of the tobacco lines with betaine synthesis or AtNHX1. Physiol. Plant. 135: 281-295 (2009).

Dubest S, Gallego ME, White CI. Roles of the AtErcc1 protein in recombination. Plant J. 39: 334-342 (2004).

Dubos C, Huggins D, Grant GH, Knight MR, Campbell MM. A role for glycine in the gating of plant NMDA-like receptors. Plant J. 35: 800-810 (2003).

Dubos C, Le Gourrierec J, Baudry A, Huep G, Lanet E, Debeaujon I, Routaboul JM, Alboresi A, Weisshaar B, Lepiniec L. MYBL2 is a new regulator of flavonoid biosynthesis in Arabidopsis thaliana. Plant J. 55: 940-953 (2008).

Dubos C, Willment J, Huggins D, Grant GH, Campbell MM. Kanamycin reveals the role played by glutamate receptors in shaping plant resource allocation. Plant J. 43: 348-355 (2005).

Dubouzet JG, Sakuma Y, Ito Y, Kasuga M, Dubouzet EG, Miura S, Seki M, Shinozaki K, Yamaguchi-Shinozaki K. OsDREB genes in rice, Oryza sativa L., encode transcription activators that function in drought-, high-salt- and cold-responsive gene expression. Plant J. 33: 751-763 (2003).

Dubrovsky JG, Gambetta GA, Hernandez-Barrera A, Shishkova S, Gonzalez I. Lateral root initiation in Arabidopsis: developmental window, spatial patterning, density and predictability. Ann. Bot. (Lond.) 97: 903-915 (2006).

Dubrovsky JG, Guttenberger M, Saralegui A, Napsucialy-Mendivil S, Voigt B, Baluska F, Menzel D. Neutral red as a probe for confocal laser scanning microscopy studies of plant roots. Ann. Bot. (Lond.) 97: 1127-1138 (2006).

Dubrovsky JG, Soukup A, Napsucialy-Mendivil S, Jeknic Z, Ivanchenko MG. The lateral root initiation index: an integrative measure of primordium formation. Ann. Bot. (Lond.) 103: 807-817 (2009).

Duby G, Hosy E, Fizames C, Alcon C, Costa A, Sentenac H, Thibaud JB. AtKC1, a conditionally targeted Shaker-type subunit, regulates the activity of plant K+ channels. Plant J. 53: 115-123 (2008).

Duclos DV, Bjorkman T. Meristem identity gene expression during curd proliferation and flower initiation in Brassica oleracea. J. Exp. Bot. 59: 421-433 (2008).

Dudareva N, Martin D, Kish CM, Kolosova N, Gorenstein N, Faldt J, Miller B, Bohlmann J. (E)-beta-ocimene and myrcene synthase genes of floral scent biosynthesis in snapdragon: function and expression of three terpene synthase genes of a new terpene synthase subfamily. Plant Cell 15: 1227-1241 (2003).

Duek PD, Fankhauser C. bHLH class transcription factors take centre stage in phytochrome signalling. Trends Plant Sci. 10: 51-54 (2005).

Dugardeyn J, Vandenbussche F, Van Der Straeten D. To grow or not to grow: what can we learn on ethylene-gibberellin cross-talk by in silico gene expression analysis? J. Exp. Bot. 59: 1-16 (2008).

Dugas DV, Bartel B. Sucrose induction of Arabidopsis miR398 represses two Cu/Zn superoxide dismutases. Plant Mol. Biol. 67: 403-417 (2008).

Dumas R, Biou V, Douce R. Purification and characterization of a fusion protein of plant acetohydroxy acid synthase and acetohydroxy acid isomeroreductase. FEBS Lett. 408: 156-160 (1997).

Dumas R, Curien G, DeRose RT, Douce R. Branched-chain-amino-acid biosynthesis in plants: molecular cloning and characterization of the gene encoding acetohydroxy acid isomeroreductase (ketol-acid reductoisomerase) from Arabidopsis thaliana (thale cress). Biochem. J. 294: 821-828 (1993).

Dumez S, Wattebled F, Dauvillee D, Delvalle D, Planchot V, Ball SG, D'Hulst C. Mutants of Arabidopsis lacking starch branching enzyme II substitute plastidial starch synthesis by cytoplasmic maltose accumulation. Plant Cell 18: 2694-2709 (2006).

Dunaeva M, Adamska W. Identification of genes expressed in response to light stress in leaves of Arabidopsis thaliana using RNA differential display. Eur. J. Biochem. 268: 5521-5529 (2001).

Dundar E, Bush DR. BAT1, a bidirectional amino acid transporter in Arabidopsis. Planta 229: 1047-1056 (2009).

Dunn TM, Lynch DV, Michaelson LV, Napier JA. A post-genomic approach to understanding sphingolipid metabolism in Arabidopsis thaliana. Ann. Bot. (Lond.) 93: 483-497 (2004).

Dunoyer P, Lecellier CH, Parizotto EA, Himber C, Voinnet O. Probing the microRNA and small interfering RNA pathways with virus-encoded suppressors of RNA silencing. Plant Cell 16: 1235-1250 (2004).

Duprat A, Caranta C, Revers F, Menand B, Browning KS, Robaglia C. The Arabidopsis eukaryotic initiation factor (iso)4E is dispensable for plant growth but required for susceptibility to potyviruses. Plant J. 32: 927-934 (2002).

Duque P, Chua NH. IMB1, a bromodomain protein induced during seed imbibition, regulates ABA- and phyA-mediated responses of germination in Arabidopsis. Plant J. 35: 787-799 (2003).

Durand N, Briand X, Meyer C. The effect of marine bioactive substances (N PRO) and exogenous cytokinins on nitrate reductase activity in Arabidopsis thaliana. Physiol. Plant. 119: 489-493 (2003).

Durbarry A, Vizir I, Twell D. Male germ line development in Arabidopsis. duo pollen mutants reveal gametophytic regulators of generative cell cycle progression. Plant Physiol. 137: 297-307 (2005).

Duroux M, Houben A, Ruzicka K, Friml J, Grasser KD. The chromatin remodelling complex FACT associates with actively transcribed regions of the Arabidopsis genome. Plant J. 40: 660-671 (2004).

Durrett TP, Connolly EL, Rogers EE. Arabidopsis cpFtsY mutants exhibit pleiotropic defects including an inability to increase iron deficiency-inducible root Fe(III) chelate reductase activity. Plant J. 47: 467-479 (2006).

Durrett TP, Gassmann W, Rogers EE. The FRD3-mediated efflux of citrate into the root vasculature is necessary for efficient iron translocation. Plant Physiol. 144: 197-1205 (2007).

Dutta B, Kanani H, Quackenbush J, Klapa MI. Time-series integrated "omic" analyses to elucidate short-term stress-induced responses in plant liquid cultures. Biotechnol. Bioeng. 102: 264-279 (2009).

Duval I, Beaudoin N. Transcriptional profiling in response to inhibition of cellulose synthesis by thaxtomin A and isoxaben in Arabidopsis thaliana suspension cells. Plant Cell Rep. 28: 811-830 (2009).

Duval I, Brochu V, Simard M, Beaulieu C, Beaudoin N. Thaxtomin A induces programmed cell death in Arabidopsis thaliana suspension-cultured cells. Planta 222: 820-831 (2005).

Duy D, Wanner G, Meda AR, von Wirén N, Soll J, Philippar K. PIC1, an ancient permease in Arabidopsis chloroplasts, mediates iron transport. Plant Cell 19: 986-1006 (2007).

Dykema PE, Sipes PR, Marie A, Biermann BJ, Crowell DN, Randall SK. A new class of proteins capable of binding transition metals. Plant Mol. Biol. 41: 139-150 (1999).

Dzuibany C, Haupt S, Fock H, Biehler K, Migge A, Becker TW. Regulation of nitrate reductase transcript levels by glutamine accumulating in the leaves of a ferredoxin-dependent glutamate synthase-deficient gluS mutant of Arabidopsis thaliana, and by glutamine provided via the roots. Planta 206: 515-522 (1998).

Eamens A, Vaistij FE, Jones L. NRPD1a and NRPD1b are required to maintain post-transcriptional RNA silencing and RNA-directed DNA methylation in Arabidopsis. Plant J. 55: 596-606 (2008).

Eapen D, Barroso ML, Campos ME, Ponce G, Corkidi G, Dubrovsky JG, Cassab GI. A no hydrotropic response root mutant that responds positively to gravitropism in Arabidopsis. Plant Physiol. 131: 536-546 (2003).

Eapen D, Barroso ML, Ponce G, Campos ME, Cassab GI. Hydrotropism: root growth responses to water. Trends Plant Sci. 10: 44-50 (2005).

Earley KW, Shook MS, Brower-Toland B, Hicks L, Pikaard CS. In vitro specificities of Arabidopsis co-activator histone acetyltransferases: implications for histone hyperacetylation in gene activation. Plant J. 52: 615-626 (2007).

Eason JR, Ryan DJ, Watson LM, Hedderley D, Christey MC, Braun RH, Coupe SA. Suppression of the cysteine protease, aleurain, delays floret senescence in Brassica oleracea. Plant Mol. Biol. 57: 645-657 (2005).

Eastmond PJ. MONODEHYROASCORBATE REDUCTASE4 is required for seed storage oil hydrolysis and postgerminative growth in Arabidopsis. Plant Cell 19: 1376-1387 (2007).

Eastmond PJ. SUGAR-DEPENDENT1 encodes a patatin domain triacylglycerol lipase that initiates storage oil breakdown in germinating Arabidopsis seeds. Plant Cell 18: 665-675 (2006).

Eastmond PJ. Glycerol-insensitive Arabidopsis mutants: gli1 seedlings lack glycerol kinase, accumulate glycerol and are more resistant to abiotic stress. Plant J. 37: 617-625 (2004).

Eastmond PJ, Graham IA. Trehalose metabolism: a regulatory role for trehalose-6-phosphate? Curr. Opin. Plant Biol. 6: 231-235 (2003).

Eastmond PJ, Li Y, Graham IA. Is trehalose-6-phosphate a regulator of sugar metabolism in plants? J. Exp. Bot. 54: 533-537 (2003).

Eastmond PJ, van Dijken AJ, Spielman M, Kerr A, Tissier AF, Dickinson HG, Jones JD, Smeekens SC, Graham IA. Trehalose-6-phosphate synthase 1, which catalyses the first step in trehalose synthesis, is essential for Arabidopsis embryo maturation. Plant J. 29: 225-235 (2002).

Ebbs ML, Bender J. Locus-specific control of DNA methylation by the Arabidopsis SUVH5 histone methyltransferase. Plant Cell 18: 1166-1176 (2006).

Eberhard J, Ehrler TT, Epple P, Felix G, Raesecke HR, Amrhein N, Schmid J. Cytosolic and plastidic chorismate mutase isozymes from Arabidopsis thaliana: molecular characterization and enzymatic properties. Plant J. 10: 815-821 (1996).

Eberhard J, Raesecke HR, Schmid J, Amrhein N. Cloning and expression in yeast of a higher plant chorismate mutase. Molecular cloning, sequencing of the cDNA and characterization of the Arabidopsis thaliana enzyme expressed in yeast. FEBS Lett. 334: 233-236 (1993).

Ebine K, Okatani Y, Uemura T, Goh T, Shoda K, Niihama M, Morita MT, Spitzer C, Otegui MS, Nakano A, Ueda T. A SNARE complex unique to seed plants is required for protein storage vacuole biogenesis and seed development of Arabidopsis thaliana. Plant Cell 20: 3006-3021 (2008).

Eckardt NA. Arabidopsis synaptotagmin1 maintains plasma membrane integrity. Plant Cell 20: 3182 (2008).

Eckardt NA. Temperature entrainment of the Arabidopsis circadian clock. Plant Cell 17: 645-647 (2005).

Eckardt NA. MicroRNAs regulate auxin homeostasis and plant development. Plant Cell 17: 1335-1338 (2005).

Eckardt NA. Peroxisomal citrate synthase provides exit route from fatty acid metabolism in oilseeds. Plant Cell 17: 1863-1865 (2005).

Eckardt NA. Photorespiration revisited. Plant Cell 17: 2139-2141 (2005).

Eckardt NA. Complexities of R gene evolution in Arabidopsis. Plant Cell 18: 1782a (2006).

Eckardt NA. Arabidopsis SUPPRESSOR OF AUXIN RESISTANCE proteins are nucleoporins. Plant Cell 18: 1541a (2006).

Eckardt NA. Structure-function analysis of Arabidopsis SNI1. Plant Cell 18: 1541 (2006).

Eckardt NA. A CLASSY RNA silencing signaling mutant in Arabidopsis. Plant Cell 19: 1439 (2007).

Eckardt NA. Epistasis and genetic regulation of variation in the Arabidopsis metabolome. Plant Cell 20: 1185-1186 (2008).

Eckardt NA. Foolish seedlings and DELLA regulators: the functions of rice SLR1 and Arabidopsis RGL1 in GA signal transduction. Plant Cell 14: 1 (2002).

Eckardt NA. Some like it with nitriles: a nitrile-specifying protein linked to herbivore feeding behavior in Arabidopsis. Plant Cell 13: 2565-2568 (2001).

Eckardt NA. Tangerine dreams: cloning of carotenoid isomerase from Arabidopsis and tomato. Plant Cell 14: 289-292 (2002).

Eckardt NA. Arabidopsis Genome Conference 2000. How a small weed changed the world. Plant Cell 13: 5-10 (2001).

Eckardt NA. Characterization of the last subunit of the Arabidopsis COP9 signalosome. Plant Cell 15: 580-581 (2003).

Eckardt NA. A new twist on systemic acquired resistance: redox control of the NPR1-TGA1 interaction by salicylic acid. Plant Cell 15: 1947-1949 (2003).

Eckardt NA. Viral defense and counterdefense: a role for adenosine kinase in innate defense and RNA silencing. Plant Cell 15: 2758-2762 (2003).

Eckardt NA, Innes R. Resistance rodeo: rounding up the full complement of Arabidopsis NBS-LRR genes. Plant Cell 15: 806-807 (2003).

Eckardt NA, Snyder GW, Portis AR Jr, Orgen WL. Growth and photosynthesis under high and low irradiance of Arabidopsis thaliana antisense mutants with reduced ribulose-1,5-bisphosphate carboxylase/oxygenase activase content. Plant Physiol. 113: 575-586 (1997).

Eckert H, Lavallee B, Schweiger BJ, Kinney AJ, Cahoon EB, Clemente T. Co-expression of the borage Delta(6) desaturase and the Arabidopsis Delta(15) desaturase results in high accumulation of stearidonic acid in the seeds of transgenic soybean. Planta 224: 1050-1057 (2006).

Eckhardt U, Grimm B, Hortensteiner S. Recent advances in chlorophyll biosynthesis and breakdown in higher plants. Plant Mol. Biol. 56: 1-14 (2004).

Eckhardt U, Mas Marques A, Buckhout TJ. Two iron-regulated cation transporters from tomato complement metal uptake-deficient yeast mutants. Plant Mol. Biol. 45: 437-448 (2001).

Edwards D, Murray JA, Smith AG. Multiple genes encoding the conserved CCAAT-box transcription factor complex are expressed in Arabidopsis. Plant Physiol. 117: 1015-1022 (1998).

Edwards K, Whitty A. Editorial. Plant Biotechnology Journal 1: 1 (2003).

Edwards KD, Anderson PE, Hall A, Salathia NS, Locke JC, Lynn JR, Straume M, Smith JQ, Millar AJ. FLOWERING LOCUS C mediates natural variation in the high-temperature response of the Arabidopsis circadian clock. Plant Cell 18: 639-650 (2006).

Effmert U, Saschenbrecker S, Ross J, Negre F, Fraser CM, Noel JP, Dudareva N, Piechulla B. Floral benzenoid carboxyl methyltransferases: from in vitro to in planta function. Phytochemistry 66: 1211-1230 (2005).

Efroni I, Blum E, Goldshmidt A, Eshed Y. A protracted and dynamic maturation schedule underlies Arabidopsis leaf development. Plant Cell 20: 2293-2306 (2008).

Egelkrout EM, Mariconti L, Settlage SB, Cella R, Robertson D, Hanley-Bowdoin L. Two E2F elements regulate the proliferating cell nuclear antigen promoter differently during leaf development. Plant Cell 14: 3225-3236 (2002).

Egelund J, Obel N, Ulvskov P, Geshi N, Pauly M, Bacic A, Petersen BL. Molecular characterization of two Arabidopsis thaliana glycosyltransferase mutants, rra1 and rra2, which have a reduced residual arabinose content in a polymer tightly associated with the cellulosic wall residue. Plant Mol. Biol. 64: 439-451 (2007).

Egelund J, Petersen BL, Motawia MS, Damager I, Faik A, Olsen CE, Ishii T, Clausen H, Ulvskov P, Geshi N. Arabidopsis thaliana RGXT1 and RGXT2 encode Golgi-localized (1,3)-{alpha}-D-xylosyltransferases involved in the synthesis of pectic rhamnogalacturonan-II. Plant Cell 18: 2593-2607 (2006).

Egelund J, Skjot M, Geshi N, Ulvskov P, Petersen BL. A complementary bioinformatics approach to identify potential plant cell wall glycosyltransferase-encoding genes. Plant Physiol. 136: 2609-2620 (2004).

Ehlert A, Weltmeier F, Wang X, Mayer CS, Smeekens S, Vicente-Carbajosa J, Droge-Laser W. Two-hybrid protein-protein interaction analysis in Arabidopsis protoplasts: establishment of a heterodimerization map of group C and group S bZIP transcription factors. Plant J. 46: 890-900 (2006).

Ehlting J, Buttner D, Wang Q, Douglas CJ, Somssich IE, Kombrink E. Three 4-coumarate:coenzyme A ligases in Arabidopsis thaliana represent two evolutionarily divergent classes in angiosperms. Plant J. 19: 9-20 (1999).

Ehlting J, Mattheus N, Aeschliman DS, Li E, Hamberger B, Cullis IF, Zhuang J, Kaneda M, Mansfield SD, Samuels L, Ritland K, Ellis BE, Bohlmann J, Douglas CJ. Global transcript profiling of primary stems from Arabidopsis thaliana identifies candidate genes for missing links in lignin biosynthesis and transcriptional regulators of fiber differentiation. Plant J. 42: 618-640 (2005).

Ehlting J, Shin JJ, Douglas CJ. Identification of 4-coumarate:coenzyme A ligase (4CL) substrate recognition domains. Plant J. 27: 455-465 (2001).

Ehsan H, Ray WK, Phinney B, Wang X, Huber SC, Clouse SD. Interaction of Arabidopsis BRASSINOSTEROID-INSENSITIVE 1 receptor kinase with a homolog of mammalian TGF-beta receptor interacting protein. Plant J. 43: 251-261 (2005).

Ehsan H, Reichheld JP, Durfee T, Roe JL. TOUSLED kinase activity oscillates during the cell cycle and interacts with chromatin regulators. Plant Physiol. 134: 1488-1499 (2004).

Eichhorn H, Klinghammer M, Becht P, Tenhaken R. Isolation of a novel ABC-transporter gene from soybean induced by salicylic acid. J. Exp. Bot. 57: 2193-2201 (2006).

Eicks M, Maurino V, Knappe S, Flugge UI, Fischer K. The plastidic pentose phosphate translocator represents a link between the cytosolic and the plastidic pentose phosphate pathways in plants. Plant Physiol. 128: 512-522 (2002).

Eilers T, Schwarz G, Brinkmann H, Witt C, Richter T, Nieder J, Koch B, Hille R, Hansch R, Mendel RR. Identification and biochemical characterization of Arabidopsis thaliana sulfite oxidase - A new player in plant sulfur metabolism. J. Biol. Chem. 276: 46989-46994 (2001).

Eimert K, Wang SM, Lue WI, Chen J. Monogenic recessive mutations causing both late floral initiation and excess starch accumulation in Arabidopsis. Plant Cell 7: 1703-1712 (1995).

Einset J, Winge P, Bones AM, Connolly EL. The FRO2 ferric reductase is required for glycine betaine's effect on chilling tolerance in Arabidopsis root. Physiol. Plant. 134: 334-341 (2008).

Eisenhaber B, Wildpaner M, Schultz CJ, Borner GH, Dupree P, Eisenhaber F. Glycosylphosphatidylinositol lipid anchoring of plant proteins. Sensitive prediction from sequence- and genome-wide studies for Arabidopsis and rice. Plant Physiol. 133: 1691-1701 (2003).

Ekman DR, Lorenz WW, Przybyla AE, Wolfe NL, Dean JF. SAGE analysis of transcriptome responses in Arabidopsis roots exposed to 2,4,6-trinitrotoluene. Plant Physiol. 133: 1397-1406 (2003).

El Amrani A, Marie L, Ainouche A, Nicolas J, Couee I. Genome-wide distribution and potential regulatory functions of AtATE, a novel family of miniature inverted-repeat transposable elements in Arabidopsis thaliana. Mol. Genet. Genomics 267: 459-471 (2002).

El Ouakfaoui S, Miki B. The stability of the Arabidopsis transcriptome in transgenic plants expressing the marker genes nptII and uidA. Plant J. 41: 791-800 (2005).

El-Din El-Assal S, Alonso-Blanco C, Peeters AJ, Wagemaker C, Weller JL, Koornneef M. The role of cryptochrome 2 in flowering in Arabidopsis. Plant Physiol. 133: 1504-1516 (2003).

El-Din El-Assal S, Le J, Basu D, Mallery EL, Szymanski DB. DISTORTED2 encodes an ARPC2 subunit of the putative Arabidopsis ARP2/3 complex. Plant J. 38: 526-538 (2004).

El-Lithy ME, Clerkx EJ, Ruys GJ, Koornneef M, Vreugdenhil D. Quantitative trait locus analysis of growth-related traits in a new Arabidopsis recombinant inbred population. Plant Physiol. 135: 444-458 (2004).

El-Lithy ME, Rodrigues GC, van Rensen JJ, Snel JF, Dassen HJ, Koornneef M, Jansen MA, Aarts MG, Vreugdenhil D. Altered photosynthetic performance of a natural Arabidopsis accession is associated with atrazine resistance. J. Exp. Bot. 56: 1625-1634 (2005).

El-Sharkawy I, Jones B, Li ZG, Lelievre JM, Pech JC, Latche A. Isolation and characterization of four ethylene perception elements and their expression during ripening in pears (Pyrus communis L.) with/without cold requirement. J. Exp. Bot. 54: 1615-1625 (2003).

Elich TD, Chory J. Biochemical characterization of Arabidopsis wild-type and mutant phytochrome B holoproteins. Plant Cell 9: 2271-2280 (1997).

Elitzur T, Nahum H, Borovsky Y, Pekker I, Eshed Y, Paran I. Co-ordinated regulation of flowering time, plant architecture and growth by FASCICULATE: the pepper orthologue of SELF PRUNING. J. Exp. Bot. 60: 869-880 (2009).

Ellendorff U, Fradin EF, de Jonge R, Thomma BP. RNA silencing is required for Arabidopsis defence against Verticillium wilt disease. J. Exp. Bot. 60: 591-602 (2009).

Ellerstrom M, Reidt W, Ivanov R, Tiedemann J, Melzer M, Tewes A, Moritz T, Mock HP, Sitbon F, Rask L, Baumlein H. Ectopic expression of EFFECTOR OF TRANSCRIPTION perturbs gibberellin-mediated plant developmental processes. Plant Mol. Biol. 59: 663-681 (2005).

Ellis C, Karafyllidis I, Wasternack C, Turner JG. The Arabidopsis mutant cev1 links cell wall signaling to jasmonate and ethylene responses. Plant Cell 14: 1557-1566 (2002).

Ellis C, Turner JG. A conditionally fertile coi1 allele indicates cross-talk between plant hormone signalling pathways in Arabidopsis thaliana seeds and young seedlings. Planta 215: 549-556 (2002).

Ellis C, Turner JG. The Arabidopsis mutant cev1 has constitutively active jasmonate and ethylene signal pathways and enhanced resistance to pathogens. Plant Cell 13: 1025-1033 (2001).

Ellis DR, Gumaelius L, Indriolo E, Pickering IJ, Banks JA, Salt DE. A novel arsenate reductase from the arsenic hyperaccumulating fern Pteris vittata. Plant Physiol. 141: 1544-1554 (2006).

Ellis DR, Sors TG, Brunk DG, Albrecht C, Orser C, Lahner B, Wood KV, Harris HH, Pickering IJ, Salt DE. Production of Se-methylselenocysteine in transgenic plants expressing selenocysteine methyltransferase. BMC Plant Biol. 4: 1 (2004).

Ellis MH, Dennis ES, Peacock WJ. Arabidopsis roots and shoots have different mechanisms for hypoxic stress tolerance. Plant Physiol. 119: 57-64 (1999).

Elmayan T, Balzergue S, Beon F, Bourdon V, Daubremet J, Guenet Y, Mourrain P, Palauqui JC, Vernhettes S, Vialle T, Wostrikoff K, Vaucheret H. Arabidopsis mutants impaired in cosuppression. Plant Cell 10: 1747-1758 (1998).

Elo A, Lyznik A, Gonzalez DO, Kachman SD, Mackenzie SA. Nuclear genes that encode mitochondrial proteins for DNA and RNA metabolism are clustered in the Arabidopsis genome. Plant Cell 15: 1619-1631 (2003).

Elomaa P, Uimari A, Mehto M, Albert VA, Laitinen RA, Teeri TH. Activation of anthocyanin biosynthesis in Gerbera hybrida (Asteraceae) suggests conserved protein-protein and protein-promoter interactions between the anciently diverged monocots and eudicots. Plant Physiol. 133: 1831-1842 (2003).

Elorza A, Leon G, Gomez I, Mouras A, Holuigue L, Araya A, Jordana X. Nuclear SDH2-1 and SDH2-2 genes, encoding the iron-sulfur subunit of mitochondrial complex II in Arabidopsis, have distinct cell-specific expression patterns and promoter activities. Plant Physiol. 136: 4072-4087 (2004).

Eltayeb AE, Kawano N, Badawi GH, Kaminaka H, Sanekata T, Shibahara T, Inanaga S, Tanaka K. Overexpression of monodehydroascorbate reductase in transgenic tobacco confers enhanced tolerance to ozone, salt and polyethylene glycol stresses. Planta 225: 1255-1264 (2007).

Elumalai RP, Nagpal P, Reed JW. A mutation in the Arabidopsis KT2/KUP2 potassium transporter gene affects shoot cell expansion. Plant Cell 14: 119-131 (2002).

Emanuel C, von Groll U, Muller M, Borner T, Weihe A. Development- and tissue-specific expression of the RpoT gene family of Arabidopsis encoding mitochondrial and plastid RNA polymerases. Planta 223: 998-1009 (2006).

Emborg TJ, Walker JM, Noh B, Vierstra RD. Multiple heme oxygenase family members contribute to the biosynthesis of the phytochrome chromophore in Arabidopsis. Plant Physiol. 140: 856-868 (2006).

Enami K, Ichikawa M, Uemura T, Kutsuna N, Hasezawa S, Nakagawa T, Nakano A, Sato MH. Differential expression control and polarized distribution of plasma membrane-resident SYP1 SNAREs in Arabidopsis thaliana. Plant Cell Physiol. 50: 280-289 (2009).

Encinas-Villarejo S, Maldonado AM, Amil-Ruiz F, de los Santos B, Romero F, Pliego-Alfaro F, Munoz-Blanco J, Caballero JL. Evidence for a positive regulatory role of strawberry (Fragaria x ananassa) Fa WRKY1 and Arabidopsis At WRKY75 proteins in resistance. J. Exp. Bot. 60: 3043-3065 (2009).

Endler A, Meyer S, Schelbert S, Schneider T, Weschke W, Peters SW, Keller F, Baginsky S, Martinoia E, Schmidt UG. Identification of a vacuolar sucrose transporter in barley and Arabidopsis mesophyll cells by a tonoplast proteomic approach. Plant Physiol. 141: 196-207 (2006).

Endo A, Sawada Y, Takahashi H, Okamoto M, Ikegami K, Koiwai H, Seo M, Toyomasu T, Mitsuhashi W, Shinozaki K, Nakazono M, Kamiya Y, Koshiba T, Nambara E. Drought induction of Arabidopsis 9-cis-epoxycarotenoid dioxygenase occurs in vascular parenchyma cells. Plant Physiol. 147: 1984-1993 (2008).

Endo M, Matsubara H, Kokubun T, Masuko H, Takahata Y, Tsuchiya T, Fukuda H, Demura T, Watanabe M. The advantages of cDNA microarray as an effective tool for identification of reproductive organ-specific genes in a model legume, Lotus japonicus. FEBS Lett. 514: 229-237 (2002).

Endo M, Mochizuki N, Suzuki T, Nagatani A. CRYPTOCHROME2 in vascular bundles regulates flowering in Arabidopsis. Plant Cell 19: 84-93 (2007).

Endo M, Nakamura S, Araki T, Mochizuki N, Nagatani A. Phytochrome B in the mesophyll delays flowering by suppressing FLOWERING LOCUS T expression in Arabidopsis vascular bundles. Plant Cell 17: 1941-1952 (2005).

Endo N, Yoshida K, Akiyoshi M, Yoshida Y, Hayashi N. Putative UDP-galactose epimerase and metallothioneine of Paspalum vaginalum enhanced the salt tolerance of rice, Oryza sativa L. from transplanting to harvest stages. Breed. Sci. 55: 163-173 (2005).

Endo S, Pesquet E, Tashiro G, Kuriyama H, Goffner D, Fukuda H, Demura T. Transient transformation and RNA silencing in Zinnia tracheary element differentiating cell cultures. Plant J. 53: 864-875 (2008).

Endo S, Pesquet E, Yamaguchi M, Tashiro G, Sato M, Toyooka K, Nishikubo N, Udagawa-Motose M, Kubo M, Fukuda H, Demura T. Identifying new components participating in the secondary cell wall formation of vessel elements in Zinnia and Arabidopsis. Plant Cell 21: 1155-1165 (2009).

Endres S, Tenhaken R. myo-Inositol oxygenase controls the level of myo-inositol in Arabidopsis but does not increase ascorbic acid. Plant Physiol. 149: 1042-1049 (2009).

Engel ML, Chaboud A, Dumas C, McCormick S. Sperm cells of Zea mays have a complex complement of mRNAs. Plant J. 34: 697-707 (2003).

Engel ML, Holmes-Davis R, McCormick S. Green sperm. Identification of male gamete promoters in Arabidopsis. Plant Physiol. 138: 2124-2133 (2005).

Engel N, van den Daele K, Kolukisaoglu U, Morgenthal K, Weckwerth W, Parnik T, Keerberg O, Bauwe H. Deletion of glycine decarboxylase in Arabidopsis is lethal under nonphotorespiratory conditions. Plant Physiol. 144: 1328-1335 (2007).

Engineer CB, Kranz RG. Reciprocal leaf and root expression of AtAmt1.1 and root architectural changes in response to nitrogen starvation. Plant Physiol. 143: 236-250 (2007).

Engstrom EM, Izhaki A, Bowman JL. Promoter bashing, microRNAs, and Knox genes. New Insights, regulators, and targets-of-regulation in the establishment of lateral organ polarity in Arabidopsis. Plant Physiol. 135: 685-694 (2004).

Enjuto M, Lumbreras V, Marin C, Boronat A. Expression of the Arabidopsis HMG2 gene, encoding 3-hydroxy-3-methylglutaryl coenzyme A reductase, is restricted to meristematic and floral tissues. Plant Cell 7: 517-527 (1995).

Enns LC, Kanaoka MM, Torii KU, Comai L, Okada K, Cleland RE. Two callose synthases, GSL1 and GSL5, play an essential and redundant role in plant and pollen development and in fertility. Plant Mol. Biol. 58: 333-349 (2005).

Enot DP, Beckmann M, Overy D, Draper J. Predicting interpretability of metabolome models based on behavior, putative identity, and biological relevance of explanatory signals. Proc. Natl. Acad. Sci. U.S.A. 103: 14865-14870 (2006).

Entus R, Poling M, Herrmann KM. Redox regulation of Arabidopsis 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase. Plant Physiol. 129: 1866-1871 (2002).

Epelbaum S, McDevitt R, Falco SC. Lysine-ketoglutarate reductase and saccharopine dehydrogenase from Arabidopsis thaliana: nucleotide sequence and characterization. Plant Mol. Biol. 35: 735-748 (1997).

Ephritikhine G, Fellner M, Vannini C, Lapous D, Barbier-Brygoo H. The sax1 dwarf mutant of Arabidopsis thaliana shows altered sensitivity of growth responses to abscisic acid, auxin, gibberellins and ethylene and is partially rescued by exogenous brassinosteroid. Plant J. 18: 303-314 (1999).

Ephritikhine G, Pagant S, Fujioka S, Takatsuto S, Lapous D, Caboche M, Kendrick RE, Barbier-Brygoo H. The sax1 mutation defines a new locus involved in the brassinosteroid biosynthesis pathway in Arabidopsis thaliana. Plant J. 18: 315-320 (1999).

Epimashko S, Fischer-Schliebs E, Christian AL, Thiel G, Luttge U. Na(+)/H (+)-transporter, H(+)-pumps and an aquaporin in light and heavy tonoplast membranes from organic acid and NaCl accumulating vacuoles of the annual facultative CAM plant and halophyte Mesembryanthemum crystallinum L. Planta 224: 944-951 (2006).

Epple P, Apel K, Bohlmann H. An Arabidopsis thaliana thionin gene is inducible via a signal transduction pathway different from that for pathogenesis-related proteins. Plant Physiol. 109: 813-820 (1995).

Era A, Tominaga M, Ebine K, Awai C, Saito C, Ishizaki K, Yamato KT, Kohchi T, Nakano A, Ueda T. Application of Lifeact reveals F-actin dynamics in Arabidopsis thaliana and the liverwort, Marchantia polymorpha. Plant Cell Physiol. 50: 1041-1048 (2009).

Ercetin ME, Ananieva EA, Safaee NM, Torabinejad J, Robinson JY, Gillaspy GE. A phosphatidylinositol phosphate-specific myo-inositol polyphosphate 5-phosphatase required for seedling growth. Plant Mol. Biol. 67: 375-388 (2008).

Ercetin ME, Gillaspy GE. Molecular characterization of an Arabidopsis gene encoding a phospholipid-specific inositol polyphosphate 5-phosphatase. Plant Physiol. 135: 938-946 (2004).

Eren E, Arguello JM. Arabidopsis HMA2, a divalent heavy metal-transporting P(IB)-type ATPase, is involved in cytoplasmic Zn2+ homeostasis. Plant Physiol. 136: 3712-3723 (2004).

Erikson O, Hertzberg M, Nasholm T. The dsdA gene from Escherichia coli provides a novel selectable marker for plant transformation. Plant Mol. Biol. 57: 425-433 (2005).

Erikson O, Hertzberg M, Nasholm T. A conditional marker gene allowing both positive and negative selection in plants. Nat. Biotechnol. 22: 455-458 (2004).

Eriksson ME, Hanano S, Southern MM, Hall A, Millar AJ. Response regulator homologues have complementary, light-dependent functions in the Arabidopsis circadian clock. Planta 218: 159-162 (2003).

Eriksson S, Bohlenius H, Moritz T, Nilsson O. GA4 is the active gibberellin in the regulation of LEAFY transcription and Arabidopsis floral initiation. Plant Cell 18: 2172-2181 (2006).

Ermolaeva MD, Wu M, Eisen JA, Salzberg SL. The age of the Arabidopsis thaliana genome duplication. Plant Mol. Biol. 51: 859-866 (2003).

Ermolayev V, Weschke W, Manteuffel R. Comparison of Al-induced gene expression in sensitive and tolerant soybean cultivars. J. Exp. Bot. 54: 2745-2756 (2003).

Errakhi R, Meimoun P, Lehner A, Vidal G, Briand J, Corbineau F, Rona JP, Bouteau F. Anion channel activity is necessary to induce ethylene synthesis and programmed cell death in response to oxalic acid. J. Exp. Bot. 59: 3121-3129 (2008).

Escamilla-Trevino LL, Chen W, Card ML, Shih MC, Cheng CL, Poulton JE. Arabidopsis thaliana beta-Glucosidases BGLU45 and BGLU46 hydrolyse monolignol glucosides. Phytochemistry 67: 1651-1660 (2006).

Esch JJ, Chen MA, Hillestad M, Marks MD. Comparison of TRY and the closely related At1g01380 gene in controlling Arabidopsis trichome patterning. Plant J. 40: 860-869 (2004).

Escobar C, Hernandez LE, Jimenez A, Creissen G, Ruiz MT, Mullineaux PM. Transient expression of Arabidopsis thaliana ascorbate peroxidase 3 in Nicotiana benthamiana plants infected with recombinant potato virus X. Plant Cell Rep. 21: 699-704 (2003).

Escobar MA, Franklin KA, Svensson AS, Salter MG, Whitelam GC, Rasmusson AG. Lght regulation of the Arabidopsis respiratory chain. Multiple discrete photoreceptor responses contribute to induction of type II NAD(P)H dehydrogenase genes. Plant Physiol. 136: 2710-2721 (2004).

Escobar MA, Geisler DA, Rasmusson AG. Reorganization of the alternative pathways of the Arabidopsis respiratory chain by nitrogen supply: opposing effects of ammonium and nitrate. Plant J. 45: 775-788 (2006).

Espinosa-Ruiz A, Belles JM, Serrano R, Culianez-MacIa FA. Arabidopsis thaliana AtHAL3: a flavoprotein related to salt and osmotic tolerance and plant growth. Plant J. 20: 529-539 (1999).

Espinosa-Soto C, Padilla-Longoria P, Alvarez-Buylla ER. A gene regulatory network model for cell-fate determination during Arabidopsis thaliana flower development that is robust and recovers experimental gene expression profiles. Plant Cell 16: 2923-2939 (2004).

Espunya MC, Diaz M, Moreno-Romero J, Martinez MC. Modification of intracellular levels of glutathione-dependent formaldehyde dehydrogenase alters glutathione homeostasis and root development. Plant Cell Environ. 29: 1002-1011 (2006).

Essah PA, Davenport R, Tester M. Sodium influx and accumulation in Arabidopsis. Plant Physiol. 133: 307-318 (2003).

Essigmann B, Hespenheide BM, Kuhn LA, Benning C. Prediction of the active-site structure and NAD(+) binding in SQD1, a protein essential for sulfolipid biosynthesis in Arabidopsis. Arch. Biochem. Biophys. 369: 30-41 (1999).

Estelle M. Proteases and cellular regulation in plants. Curr. Opin. Plant Biol. 4: 254-260 (2001).

Estevez JM, Cantero A, Romero C, Kawaide H, Jimenez LF, Kuzuyama T, Seto H, Kamiya Y, Leon P. Analysis of the expression of CLA1, a gene that encodes the 1-deoxyxylulose 5-phosphate synthase of the 2-C-methyl-D-erythritol-4-phosphate pathway in Arabidopsis. Plant Physiol. 124: 95-104 (2000).

Estevez JM, Kieliszewski MJ, Khitrov N, Somerville C. Characterization of synthetic hydroxyproline-rich proteoglycans with arabinogalactan protein and extensin motifs in Arabidopsis. Plant Physiol. 142: 458-470 (2006).

Etheridge N, Chen YF, Schaller GE. Dissecting the ethylene pathway of Arabidopsis. Brief Funct. Genomic. Proteomic. 3: 372-381 (2005).

Eubel H, Jansch L, Braun HP. New insights into the respiratory chain of plant mitochondria. Supercomplexes and a unique composition of complex II. Plant Physiol. 133: 274-286 (2003).

Eubel H, Lee CP, Kuo J, Meyer EH, Taylor NL, Millar AH. Free-flow electrophoresis for purification of plant mitochondria by surface charge. Plant J. 52: 583-594 (2007).

Eubel H, Meyer EH, Taylor NL, Bussell JD, O'Toole N, Heazlewood JL, Castleden I, Small ID, Smith SM, Millar AH. Novel proteins, putative membrane transporters and an integrated metabolic network are revealed by quantitative proteomic analysis of Arabidopsis cell culture peroxisomes. Plant Physiol. 148: 1809-1829 (2008).

Eudes A, Bozzo GG, Waller JC, Naponelli V, Lim EK, Bowles DJ, Gregory JF 3rd, Hanson AD. Metabolism of the folate precursor p-aminobenzoate in plants: glucose ester formation and vacuolar storage. J. Biol. Chem. 283: 15451-15459 (2008).

Eudes A, Mouille G, Thevenin J, Minic Z, Jouanin L. Purification, cloning and functional characterization of an endogenous beta-glucuronidase in Arabidopsis thaliana. Plant Cell Physiol. 49: 1331-1341 (2008).

Eudes A, Pollet B, Sibout R, Do CT, Seguin A, Lapierre C, Jouanin L. Evidence for a role of AtCAD 1 in lignification of elongating stems of Arabidopsis thaliana. Planta 225: 23-39 (2006).

Eulgem T. Regulation of the Arabidopsis defense transcriptome. Trends Plant Sci. 10: 71-78 (2005).

Eulgem T, Tsuchiya T, Wang XJ, Beasley B, Cuzick A, Tör M, Zhu T, McDowell JM, Holub E, Dangl JL. EDM2 is required for RPP7-dependent disease resistance in Arabidopsis and affects RPP7 transcript levels. Plant J. 49: 829-839 (2007).

Eulgem T, Weigman VJ, Chang HS, McDowell JM, Holub EB, Glazebrook J, Zhu T, Dangl JL. Gene expression signatures from three genetically separable resistance gene signaling pathways for downy mildew resistance. Plant Physiol. 135: 1129-1144 (2004).

EUROPEAN UNION CHROMOSOME 3 ARABIDOPSIS GENOME SEQUENCING CONSORTIUM, THE INSTITUTE FOR GENOMIC RESEARCH & KAZUSA DNA RESEARCH INSTITUTE. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Nature 408: 820-823 (2000).

Evans NH, McAinsh MR, Hetherington AM, Knight MR. ROS perception in Arabidopsis thaliana: the ozone-induced calcium response. Plant J. 41: 615-626 (2005).

Ewald R, Kolukisaoglu U, Bauwe U, Mikkat S, Bauwe H. Mitochondrial protein lipoylation does not exclusively depend on the mtKAS pathway of de-novo fatty acid synthesis in Arabidopsis. Plant Physiol. 145: 41-48 (2007).

Ezaki B, Gardner RC, Ezaki Y, Matsumoto H. Expression of aluminum-induced genes in transgenic Arabidopsis plants can ameliorate aluminum stress and/or oxidative stress. Plant Physiol. 122: 657-666 (2000).

Ezaki B, Katsuhara M, Kawamura M, Matsumoto H. Different mechanisms of four aluminum (Al)-resistant transgenes for Al toxicity in Arabidopsis. Plant Physiol. 127: 918-927 (2001).

Ezaki B, Sasaki K, Matsumoto H, Nakashima S. Functions of two genes in aluminium (Al) stress resistance: repression of oxidative damage by the AtBCB gene and promotion of efflux of Al ions by the NtGDI1gene. J. Exp. Bot. 56: 2661-2671 (2005).

Ezaki B, Suzuki M, Motoda H, Kawamura M, Nakashima S, Matsumoto H. Mechanism of gene expression of Arabidopsis glutathione S-transferase, AtGST1, and AtGST11 in response to aluminum stress. Plant Physiol. 134: 1672-1682 (2004).

Ezhova TA, Soldatova OP, Mamanova LB, Musin SM, Grimm B, Shestakov SV. Collection of Arabidopsis thaliana mutants with altered sensitivity to oxidative stress inductors. Izv. Akad. Nauk. Ser. Biol. 5: 533-543 (2001).

Ezura H, Harberd NP. Endogenous gibberellin levels influence in-vitro shoot regeneration in Arabidopsis thaliana (L.) Heynh. Planta 197: 301-305 (1995).

Fabienne M, Benoît R, Martine C, Bruno S, Jean-Philippe G, Didier A. Mutations in AtCML9, a calmodulin-like protein from A. thaliana, alter plant responses to abiotic stress and abscisic acid. Plant J. 56: 575-589 (2008).

Fabre N, Reiter IM, Becuwe-Linka N, Genty B, Rumeau D. Characterization and expression analysis of genes encoding alpha and beta carbonic anhydrases in Arabidopsis. Plant Cell Environ. 30: 617-629 (2007).

Facchini PJ, Bird DA, St-Pierre B. Can Arabidopsis make complex alkaloids? Trends Plant Sci. 9: 116-122 (2004).

Fahey JW, Zalcmann AT, Talalay P. The chemical diversity and distribution of glucosinolates and isothiocyanates among plants. Phytochemistry 56: 5-51 (2001).

Fahnenstich H, Scarpeci TE, Valle EM, Flugge UI, Maurino VG. Generation of hydrogen peroxide in chloroplasts of Arabidopsis thaliana overexpressing glycolate oxidase as an inducible system to study oxidative stress. Plant Physiol. 148: 719-729 (2008).

Faigon-Soverna A, Harmon FG, Storani L, Karayekov E, Staneloni RJ, Gassmann W, Mas P, Casal JJ, Kay SA, Yanovsky MJ. A constitutive shade-avoidance mutant implicates TIR-NBS-LRR proteins in Arabidopsis photomorphogenic development. Plant Cell 18: 2919-2928 (2006).

Fait A, Angelovici R, Less H, Ohad I, Urbanczyk-Wochniak E, Fernie AR, Galili G. Arabidopsis seed development and germination is associated with temporally distinct metabolic switches. Plant Physiol. 142: 839-854 (2006).

Fait A, Yellin A, Fromm H. GABA shunt deficiencies and accumulation of reactive oxygen intermediates: insight from Arabidopsis mutants. FEBS Lett. 579: 415-420 (2005).

Falcone A, Nelissen H, Fleury D, Van Lijsebettens M, Bitonti MB. Cytological investigations of the Arabidopsis thaliana elo1 mutant give new insights into leaf lateral growth and elongator function. Ann. Bot. (Lond.) 100: 261-270 (2007).

Falcone DL, Gibson S, Lemieux B, Somerville C. Identification of a gene that complements an Arabidopsis mutant deficient in chloroplast omega 6 desaturase activity. Plant Physiol. 106: 1453-1459 (1994).

Faldt J, Arimura G, Gershenzon J, Takabayashi J, Bohlmann J. Functional identification of AtTPS03 as ( E)-beta-ocimene synthase: a monoterpene synthase catalyzing jasmonate- and wound-induced volatile formation in Arabidopsis thaliana. Planta 216: 745-751 (2003).

Falk J, Andersen G, Kernebeck B, Krupinska K. Constitutive overexpression of barley 4-hydroxyphenylpyruvate dioxygenase in tobacco results in elevation of the vitamin E content in seeds but not in leaves. FEBS Lett. 540: 35-40 (2003).

Falkenberg B, Witt I, Zanor MI, Steinhauser D, Mueller-Roeber B, Hesse H, Hoefgen R. Transcription factors relevant to auxin signalling coordinate broad-spectrum metabolic shifts including sulphur metabolism. J. Exp. Bot. 59: 2831-2846 (2008).

Fallahi H, Scofield GN, Badger MR, Chow WS, Furbank RT, Ruan YL. Localization of sucrose synthase in developing seed and siliques of Arabidopsis thaliana reveals diverse roles for SUS during development. J. Exp. Bot. 59: 3283-3295 (2008).

Fambrini M, Durante C, Cionini G, Geri C, Giorgetti L, Michelotti V, Salvini M, Pugliesi C. Characterization of LEAFY COTYLEDON1-LIKE gene in Helianthus annuus and its relationship with zygotic and somatic embryogenesis. Dev. Genes Evol. 216: 253-264 (2006).

Fan J, Crooks C, Lamb C. High-throughput quantitative luminescence assay of the growth in planta of Pseudomonas syringae chromosomally tagged with Photorhabdus luminescens luxCDABE. Plant J. 53: 393-399 (2008).

Fan J, Quan S, Orth T, Awai C, Chory J, Hu J. The Arabidopsis PEX12 gene is required for peroxisome biogenesis and is essential for development. Plant Physiol. 139: 231-239 (2005).

Fan L, Zheng S, Cui D, Wang X. Subcellular distribution and tissue expression of phospholipase dalpha, dbeta, and dgamma in Arabidopsis. Plant Physiol. 119: 1371-1378 (1999).

Fan L, Zheng S, Wang X. Antisense suppression of phospholipase D alpha retards abscisic acid- and ethylene-promoted senescence of postharvest Arabidopsis leaves. Plant Cell 9: 2183-2196 (1997).

Fan W, Dong X. In vivo interaction between NPR1 and transcription factor TGA2 leads to salicylic acid-mediated gene activation in Arabidopsis. Plant Cell 14: 1377-1389 (2002).

Fang SC, Fernandez DE. Effect of regulated overexpression of the MADS domain factor AGL15 on flower senescence and fruit maturation. Plant Physiol. 130: 78-89 (2002).

Fang Z, Kamasani U, Berkowitz GA. Molecular cloning and expression characterization of a rice K+ channel beta subunit. Plant Mol. Biol. 37: 597-606 (1998).

Fankhauser C, Casal JJ. Phenotypic characterization of a photomorphogenic mutant. Plant J. 39: 747-760 (2004).

Fankhauser C, Chory J. RSF1, an Arabidopsis locus implicated in phytochrome A signaling. Plant Physiol. 124: 39-46 (2000).

Fankhauser C, Staiger D. Photoreceptors in Arabidopsis thaliana: light perception, signal transduction and entrainment of the endogenous clock. Planta 216: 1-16 (2002).

Farag MA, Ryu CM, Sumner LW, Pare PW. GC-MS SPME profiling of rhizobacterial volatiles reveals prospective inducers of growth promotion and induced systemic resistance in plants. Phytochemistry 67: 2262-2268 (2006).

Farage-Barhom S, Burd S, Sonego L, Perl-Treves R, Lers A. Expression analysis of the BFN1 nuclease gene promoter during senescence, abscission, and programmed cell death-related processes. J. Exp. Bot. 59: 3247-3258 (2008).

Farkas I, Dombradi V, Miskei M, Szabados L, Koncz C. Arabidopsis PPP family of serine/threonine phosphatases. Trends Plant Sci. 12: 169-176 (2007).

Farmer EE, Weber H, Vollenweider S. Fatty acid signaling in Arabidopsis. Planta 206: 167-174 (1998).

Farrar K, Evans IM, Topping JF, Souter MA, Nielsen JE, Lindsey K. EXORDIUM--a gene expressed in proliferating cells and with a role in meristem function, identified by promoter trapping in Arabidopsis. Plant J. 33: 61-73 (2003).

Farre EM, Kay SA. PRR7 protein levels are regulated by light and the circadian clock in Arabidopsis. Plant J. 52: 548-560 (2007).

Fatland BL, Ke J, Anderson MD, Mentzen WI, Cui LW, Allred CC, Johnston JL, Nikolau BJ, Wurtele ES. Molecular characterization of a heteromeric ATP-citrate lyase that generates cytosolic acetyl-coenzyme A in Arabidopsis. Plant Physiol. 130: 740-756 (2002).

Fatland BL, Nikolau BJ, Wurtele ES. Reverse genetic characterization of cytosolic acetyl-CoA generation by ATP-citrate lyase in Arabidopsis. Plant Cell 17: 182-203 (2005).

Fauconnier ML, Williams TD, Marlier M, Welti R. Potato tuber phospholipids contain colneleic acid in the 2- position. FEBS Lett. 538: 155-158 (2003).

Fauteux F, Chain F, Belzile F, Menzies JG, Belanger RR. The protective role of silicon in the Arabidopsis-powdery mildew pathosystem. Proc. Natl. Acad. Sci. U.S.A. 103: 17554-17559 (2006).

Favaro R, Pinyopich A, Battaglia R, Kooiker M, Borghi L, Ditta G, Yanofsky MF, Kater MM, Colombo L. MADS-box protein complexes control carpel and ovule development in Arabidopsis. Plant Cell 15: 2603-2611 (2003).

Favery B, Chelysheva LA, Lebris M, Jammes F, Marmagne A, De Almeida-Engler J, Lecomte P, Vaury C, Arkowitz RA, Abad P. Arabidopsis formin AtFH6 is a plasma membrane-associated protein upregulated in giant cells induced by parasitic nematodes. Plant Cell 16: 2529-2540 (2004).

Federspiel N. Deciphering a weed. Genomic sequencing of Arabidopsis. Plant Physiol. 124: 1456-1459 (2000).

Fedina IS, Georgieva K, Grigorova I. Light-dark changes in proline content of barley leaves under salt stress. Biol. Plant. 45: 59-63 (2002).

Fedoroff NV, Smith DL. A versatile system for detecting transposition in Arabidopsis. Plant J. 3: 273-289 (1993).

Fedorova E, Thomson R, Whitehead LF, Maudoux O, Udvardi MK, Day DA. Localization of H(+)-ATPases in soybean root nodules. Planta 209: 25-32 (1999).

Fedorova M, Van De Mortel J, Matsumoto PA, Cho J, Town CD, VandenBosch KA, Gantt JS, Vance CP. Genome-wide identification of nodule-specific transcripts in the model legume Medicago truncatula. Plant Physiol. 130: 519-537 (2002).

Fehr M, Ehrhardt DW, Lalonde S, Frommer WB. Minimally invasive dynamic imaging of ions and metabolites in living cells. Curr. Opin. Plant Biol. 7: 345-351 (2004).

Fei H, Zhang R, Pharis RP, Sawhney VK. Pleiotropic effects of the male sterile33 (ms33) mutation in Arabidopsis are associated with modifications in endogenous gibberellins, indole-3-acetic acid and abscisic acid. Planta 219: 649-660 (2004).

Fei Z, Tang X, Alba RM, White JA, Ronning CM, Martin GB, Tanksley SD, Giovannoni JJ. Comprehensive EST analysis of tomato and comparative genomics of fruit ripening. Plant J. 40: 47-59 (2004).

Feild TS, Sage TL, Czerniak C, Iles WJD. Hydathodal leaf teeth of Chloranthus japonicus (Chloranthaceae) prevent guttation-induced flooding of the mesophyll. Plant Cell Environ. 28: 1179-1190 (2005).

Feinbaum RL, Ausubel FM. Transcriptional regulation of the Arabidopsis thaliana chalcone synthase gene. Mol. Cell Biol. 8: 1985-1992 (1988).

Feldbrugge M, Arizti P, Sulliva ML, Zamore PD, Belasco JG, Gree PJ. Comparative analysis of the plant mRNA-destabilizing element, DST, in mammalian and tobacco cells. Plant Mol. Biol. 49: 215-223 (2002).

Fellbrich G, Romanski A, Varet A, Blume B, Brunner F, Engelhardt S, Felix G, Kemmerling B, Krzymowska M, Nurnberger T. NPP1, a Phytophthora-associated trigger of plant defense in parsley and Arabidopsis. Plant J. 32: 375-390 (2002).

Fellenberg C, Milkowski C, Hause B, Lange PR, Böttcher CT, Schmidt J, Vogt T. Tapetum specific location of a cation-dependent O-methyltransferase in Arabidopsis thaliana. Plant J. 56: 132-145 (2008).

Feng H, An F, Zhang S, Ji Z, Ling HQ, Zuo J. Light-regulated, tissue-specific, and cell differentiation-specific expression of the Arabidopsis Fe(III)-chelate reductase gene AtFRO6. Plant Physiol. 140: 1345-1354 (2006).

Feng H, Chen Q, Feng J, Zhang J, Yang X, Zuo J. Functional characterization of the Arabidopsis eukaryotic translation initiation factor 5A-2 that plays a crucial role in plant growth and development by regulating cell division, cell growth, and cell death. Plant Physiol. 144: 1531-1545 (2007).

Feng JX, Liu D, Pan Y, Gong W, Ma LG, Luo JC, Deng XW, Zhu YX. An annotation update via cDNA sequence analysis and comprehensive profiling of developmental, hormonal or environmental responsiveness of the Arabidopsis AP2/EREBP transcription factor gene family. Plant Mol. Biol. 59: 853-868 (2005).

Feng S, Shen Y, Sullivan JA, Rubio V, Xiong Y, Sun TP, Deng XW. Arabidopsis CAND1, an unmodified CUL1-interacting protein, is involved in multiple developmental pathways controlled by ubiquitin/proteasome-mediated protein degradation. Plant Cell 16: 1870-1882 (2004).

Feng XL, Ni WM, Elge S, Mueller-Roeber B, Xu ZH, Xue HW. Auxin flow in anther filaments is critical for pollen grain development through regulating pollen mitosis. Plant Mol. Biol. 61: 215-226 (2006).

Feraud M, Masclaux-Daubresse C, Ferrario-Mery S, Pageau K, Lelandais M, Ziegler C, Leboeuf E, Jouglet T, Viret L, Spampinato A, Paganelli V, Hammouda MB, Suzuki A. Expression of a ferredoxin-dependent glutamate synthase gene in mesophyll and vascular cells and functions of the enzyme in ammonium assimilation in Nicotiana tabacum (L.). Planta 222: 667-677 (2005).

Ferjani A, Horiguchi G, Yano S, Tsukaya H. Analysis of leaf development in fugu mutants of Arabidopsis reveals three compensation modes that modulate cell expansion in determinate organs. Plant Physiol. 144: 988-999 (2007).

Ferl RJ. 14-3-3 proteins: regulation of signal-induced events. Physiol. Plant. 120: 173-178 (2004).

Fernandez DE, Heck GR, Perry SE, Patterson SE, Bleecker AB, Fang SC. The embryo MADS domain factor AGL15 acts postembryonically. Inhibition of perianth senescence and abscission via constitutive expression. Plant Cell 12: 183-198 (2000).

Fernandez E, Schnell R, Ranum LP, Hussey SC, Silflow CD, Lefebvre PA. Isolation and characterization of the nitrate reductase structural gene of Chlamydomonas reinhardtii. Proc. Natl. Acad. Sci. U.S.A. 86: 6449-6453 (1989).

Ferrandiz C. Regulation of fruit dehiscence in Arabidopsis. J. Exp. Bot. 53: 2031-2038 (2002).

Ferrandiz C, Pelaz S, Yanofsky MF. Control of carpel and fruit development in Arabidopsis. Annu. Rev. Biochem. 68: 321-354 (1999).

Ferrari S, Plotnikova JM, De Lorenzo G, Ausubel FM. Arabidopsis local resistance to Botrytis cinerea involves salicylic acid and camalexin and requires EDS4 and PAD2, but not SID2, EDS5 or PAD4. Plant J. 35: 193-205 (2003).

Ferrari S, Vairo D, Ausubel FM, Cervone F, De Lorenzo G. Tandemly duplicated Arabidopsis genes that encode polygalacturonase-inhibiting proteins are regulated coordinately by different signal transduction pathways in response to fungal infection. Plant Cell 15: 93-106 (2003).

Ferrario S, Busscher J, Franken J, Gerats T, Vandenbussche M, Angenent GC, Immink RG. Ectopic expression of the petunia MADS box gene UNSHAVEN accelerates flowering and confers leaf-like characteristics to floral organs in a dominant-negative manner. Plant Cell 16: 1490-1505 (2004).

Ferrario S, Immink RG, Shchennikova A, Busscher-Lange J, Angenent GC. The MADS box gene FBP2 is required for SEPALLATA function in petunia. Plant Cell 15: 914-925 (2003).

Ferrario S, Shchennikova AV, Franken J, Immink RG, Angenent GC. Control of floral meristem determinacy in Petunia by MADS box transcription factors. Plant Physiol. 140: 890-898 (2006).

Ferrario-Mery S, Bouvet M, Leleu O, Savino G, Hodges M, Meyer C. Physiological characterisation of Arabidopsis mutants affected in the expression of the putative regulatory protein PII. Planta 223: 28-39 (2005).

Ferrario-Mery S, Hodges M, Hirel B, Foyer CH. Photorespiration-dependent increases in phosphoenolpyruvate carboxylase, isocitrate dehydrogenase and glutamate dehydrogenase in transformed tobacco plants deficient in ferredoxin-dependent glutamine-alpha-ketoglutarate aminotransferase. Planta 214: 877-886 (2002).

Ferrol N, Belver A, Roldan M, Rodriguez-Rosales MP, Donaire JP. Effects of boron on proton transport and membrane properties of sunflower (Helianthus annuus L.) cell microsomes. Plant Physiol. 103: 763-769 (1993).

Fett JP, Coleman JR. Characterization and expression of two cDNAs encoding carbonic anhydrase in Arabidopsis thaliana. Plant Physiol. 105: 707-713 (1994).

Fettke J, Chia T, Eckermann N, Smith A, Steup M. A transglucosidase necessary for starch degradation and maltose metabolism in leaves at night acts on cytosolic heteroglycans (SHG). Plant J. 46: 668-684 (2006).

Fettke J, Eckermann N, Poeste S, Pauly M, Steup M. The glycan substrate of the cytosolic (Pho 2) phosphorylase isozyme from Pisum sativum L.: identification, linkage analysis and subcellular localization. Plant J. 39: 933-946 (2004).

Fettke J, Eckermann N, Tiessen A, Geigenberger P, Steup M. Identification, subcellular localization and biochemical characterization of water-soluble heteroglycans (SHG) in leaves of Arabidopsis thaliana L.: distinct SHG reside in the cytosol and in the apoplast. Plant J. 43: 568-585 (2005).

Feys BJ, Wiermer M, Bhat RA, Moisan LJ, Medina-Escobar N, Neu C, Cabral A, Parker JE. Arabidopsis SENESCENCE-ASSOCIATED GENE101 stabilizes and signals within an ENHANCED DISEASE SUSCEPTIBILITY1 complex in plant innate immunity. Plant Cell 17: 2601-2613 (2005).

Fido RJ. Isolation and partial amino acid sequence of domains of nitrate reductase from spinach. Phytochemistry 30: 3519-3523 (1991).

Fiebig A, Mayfield JA, Miley NL, Chau S, Fischer RL, Preuss D. Alterations in CER6, a gene identical to CUT1, differentially affect long-chain lipid content on the surface of pollen and stems. Plant Cell 12: 2001-2008 (2000).

Fiehn O, Kopka J, Dormann P, Altmann T, Trethewey RN, Willmitzer L. Metabolite profiling for plant functional genomics. Nat. Biotechnol. 18: 1157-1161 (2000).

Fiehn O, Wohlgemuth G, Scholz M, Kind T, Lee do Y, Lu Y, Moon S, Nikolau B. Quality control for plant metabolomics: reporting MSI-compliant studies. Plant J. 53: 691-704 (2008).

Field B, Cardon G, Traka M, Botterman J, Vancanneyt G, Mithen R. Glucosinolate and amino acid biosynthesis in Arabidopsis. Plant Physiol. 135: 828-839 (2004).

Field B, Furniss C, Wilkinson A, Mithen R. Expression of a Brassica isopropylmalate synthase gene in Arabidopsis perturbs both glucosinolate and amino acid metabolism. Plant Mol. Biol. 60: 717-727 (2006).

Fiers M, Golemiec E, van der Schors R, van der Geest L, Li KW, Stiekema WJ, Liu CM. The CLV3/ESR motif of CLV3 is functionally independent from the non-conserved flanking sequences. Plant Physiol. 141: 1284-1292 (2006).

Fiers M, Golemiec E, Xu J, van der Geest L, Heidstra R, Stiekema W, Liu CM. The 14-amino acid CLV3, CLE19, and CLE40 peptides trigger consumption of the root meristem in Arabidopsis through a CLAVATA2-dependent pathway. Plant Cell 17: 2542-2553 (2005).

Fiers M, Hause G, Boutilier K, Casamitjana-Martinez E, Weijers D, Offringa R, van der Geest L, van Lookeren Campagne M, Liu CM. Mis-expression of the CLV3/ESR-like gene CLE19 in Arabidopsis leads to a consumption of root meristem. Gene 327: 37-49 (2004).

Fiers M, Ku KL, Liu CM. CLE peptide ligands and their roles in establishing meristems. Curr. Opin. Plant Biol. 10: 39-43 (2007).

Figueroa P, Gusmaroli G, Serino G, Habashi J, Ma L, Shen Y, Feng S, Bostick M, Callis J, Hellmann H, Deng XW. Arabidopsis has two redundant Cullin3 proteins that are essential for embryo development and that interact with RBX1 and BTB proteins to form multisubunit E3 ubiquitin ligase complexes in vivo. Plant Cell 17: 1180-1195 (2005).

Figueroa P, Leon G, Elorza A, Holuigue L, Araya A, Jordana X. The four subunits of mitochondrial respiratory complex II are encoded by multiple nuclear genes and targeted to mitochondria in Arabidopsis thaliana. Plant Mol. Biol. 50: 725-734 (2002).

Figueroa P, Leon G, Elorza A, Holuigue L, Jordana X. Three different genes encode the iron-sulfur subunit of succinate dehydrogenase in Arabidopsis thaliana. Plant Mol. Biol. 46: 241-250 (2001).

Figueroa-Balderas RE, Garcia-Ponce B, Rocha-Sosa M. Hormonal and stress induction of the gene encoding common bean acetyl-coenzyme A carboxylase. Plant Physiol. 142: 609-619 (2006).

Filardo F, Robertson M, Singh DP, Parish RW, Swain SM. Functional analysis of HvSPY, a negative regulator of GA response, in barley aleurone cells and Arabidopsis. Planta 229: 523-537 (2009).

Filichkin SA, Leonard JM, Monteros A, Liu PP, Nonogaki H. A novel endo-beta-mannanase gene in tomato LeMAN5 is associated with anther and pollen development. Plant Physiol. 134: 1080-1087 (2004).

Filkowski J, Kovalchuk O, Kovalchuk I. Genome stability of vtc1, tt4, and tt5 Arabidopsis thaliana mutants impaired in protection against oxidative stress. Plant J. 38: 60-69 (2004).

Filleur S, Daniel-Vedele F. Expression analysis of a high-affinity nitrate transporter isolated from Arabidopsis thaliana by differential display. Planta 207: 461-469 (1999).

Fillion L, Ageorges A, Picaud S, Coutos-Thevenot P, Lemoine R, Romieu C, Delrot S. Cloning and expression of a hexose transporter gene expressed during the ripening of grape berry. Plant Physiol. 120: 1083-1094 (1999).

Finch-Savage WE, Cadman CS, Toorop PE, Lynn JR, Hilhorst HW. Seed dormancy release in Arabidopsis Cvi by dry after-ripening, low temperature, nitrate and light shows common quantitative patterns of gene expression directed by environmentally specific sensing. Plant J. 51: 60-78 (2007).

Finch-Savage WE, Come D, Lynn JR, Corbineau F. Sensitivity of Brassica oleracea seed germination to hypoxia: a QTL analysis. Plant Sci. 169: 753-759 (2005).

Finkelstei D, Ewing R, Gollub J, Sterky F, Cherry JM, Somerville S. Microarray data quality analysis: lessons from the AFGC project. Arabidopsis Functional Genomics Consortium. Plant Mol. Biol. 48: 119-131 (2002).

Finkelstein RR. Abscisic acid-insensitive mutations provide evidence for stage-specific signal pathways regulating expression of an Arabidopsis late embryogenesis-abundant (lea) gene. Mol. Gen. Genet. 238: 401-408 (1993).

Finkelstein RR, Lynch TJ. Abscisic acid inhibition of radicle emergence but not seedling growth is suppressed by sugars. Plant Physiol. 122: 1179-1186 (2000).

Finkelstein RR, Lynch TJ. The Arabidopsis abscisic acid response gene ABI5 encodes a basic leucine zipper transcription factor. Plant Cell 12: 599-610 (2000).

Finkelstein RR, Wang ML, Lynch TJ, Rao S, Goodman HM. The Arabidopsis abscisic acid response locus ABI4 encodes an APETALA 2 domain protein. Plant Cell 10: 1043-1054 (1998).

Finkemeier I, Goodman M, Lamkemeyer P, Kandlbinder A, Sweetlove LJ, Dietz KJ. The mitochondrial type II peroxiredoxin F is essential for redox homeostasis and root growth of Arabidopsis thaliana under stress. J. Biol. Chem. 280: 12168-12180 (2005).

Finkemeier I, Kluge C, Metwally A, Georgi M, Grotjohann N, Dietz KJ. Alterations in Cd-induced gene expression under nitrogen deficiency in Hordeum vulgare. Plant Cell Environ. 26: 821-833 (2003).

Finnegan EJ, Dennis ES. Isolation and identification by sequence homology of a putative cytosine methyltransferase from Arabidopsis thaliana. Nucleic Acids Res. 21: 2383-2388 (1993).

Finnegan EJ, Genger RK, Peacock WJ, Dennis ES. DNA methylation in plants. Annu. Rev. Plant Physiol. Plant Mol. Biol. 49: 223-247 (1998).

Finnegan EJ, Kovac KA. Plant DNA methyltransferases. Plant Mol. Biol. 43: 189-201 (2000).

Fiorani F, Umbach AL, Siedow JN. The alternative oxidase of plant mitochondria is involved in the acclimation of shoot growth at low temperature. A study of Arabidopsis AOX1a transgenic plants. Plant Physiol. 139: 1795-1805 (2005).

Fischer R, Drossard J, Schillberg S, Artsaenko O, Emans N, Naehring JM. Chapter 5. Modulation of Plant Function and Plant Pathogens by Antibody Expression. In "Metabolic Engineering of Plant Secondary Metabolism" (Verpoorte R, Alfermann AW, eds), Kluwer Academic Publishers, Dortrecht, The Netherlands, pp. 87-109 (2000).

Fischer U, Kuhlmann M, Pecinka A, Schmidt R, Mette MF. Local DNA features affect RNA-directed transcriptional gene silencing and DNA methylation. Plant J. 53: 1-10 (2008).

Fitchette AC, Cabanes-Macheteau M, Marvin L, Martin B, Satiat-Jeunemaitre B, Gomord V, Crooks K, Lerouge P, Faye L, Hawes C. Biosynthesis and immunolocalization of Lewis a-containing N-glycans in the plant cell. Plant Physiol. 121: 333-344 (1999).

Fitter DW, Martin DJ, Copley MJ, Scotland RW, Langdale JA. GLK gene pairs regulate chloroplast development in diverse plant species. Plant J. 31: 713-727 (2002).

Fittinghoff K, Laubinger S, Nixdorf M, Fackendahl P, Baumgardt RL, Batschauer A, Hoecker U. Functional and expression analysis of Arabidopsis SPA genes during seedling photomorphogenesis and adult growth. Plant J. 47: 577-590 (2006).

Fitzgerald HA, Canlas PE, Chern MS, Ronald PC. Alteration of TGA factor activity in rice results in enhanced tolerance to Xanthomonas oryzae pv. oryzae. Plant J. 43: 335-347 (2005).

Fitzgerald HA, Chern MS, Navarre R, Ronald PC. Overexpression of (At)NPR1 in rice leads to a BTH- and environment-induced lesion-mimic/cell death phenotype. Mol. Plant-Microbe Interact. 17: 140-151 (2004).

Fitzpatrick LM, Keegstra K. A method for isolating a high yield of Arabidopsis chloroplasts capable of efficient import of precursor proteins. Plant J. 27: 59-65 (2001).

Fizames C, Munos S, Cazettes C, Nacry P, Boucherez J, Gaymard F, Piquemal D, Delorme V, Commes T, Doumas P, Cooke R, Marti J, Sentenac H, Gojon A. The Arabidopsis root transcriptome by serial analysis of gene expression. Gene identification using the genome sequence. Plant Physiol. 134: 67-80 (2004).

Flanders DJ, Weng S, Petel FX, Cherry JM. AtDB, the Arabidopsis thaliana database, and graphical-web-display of progress by the Arabidopsis Genome Initiative. Nucleic Acids Res. 26: 80-84 (1998).

Fleck B, Harberd NP. Evidence that the Arabidopsis nuclear gibberellin signalling protein GAI is not destabilised by gibberellin. Plant J. 32: 935-947 (2002).

Fleet CM, Yamaguchi S, Hanada A, Kawaide H, David CJ, Kamiya Y, Sun TP. Overexpression of AtCPS and AtKS in Arabidopsis confers increased ent-kaurene production but no increase in bioactive gibberellins. Plant Physiol. 132: 830-839 (2003).

Fletcher JC. Shoot and floral meristem maintenance in Arabidopsis. Annu. Rev. Plant Biol. 53: 45-66 (2002).

Fleury D, Himanen K, Cnops G, Nelissen H, Boccardi TM, Maere S, Beemster GT, Neyt P, Anami S, Robles P, Micol JL, Inze D, Van Lijsebettens M. The Arabidopsis thaliana homolog of yeast BRE1 has a function in cell cycle regulation during early leaf and root growth. Plant Cell 19: 417-432 (2007).

Flint-Garcia SA, Thornsberry JM, Buckler IV ES. Structure of linkage disequilibrium in plants. Annu. Rev. Plant Biol. 54: 357-374 (2003).

Flores T, Todd CD, Tovar-Mendez A, Dhanoa PK, Correa-Aragunde N, Hoyos ME, Brownfield DM, Mullen RT, Lamattina L, Polacco JC. Arginase-negative mutants of Arabidopsis exhibit increased NO signaling in root development. Plant Physiol. 147: 1936-1946 (2008).

Flors C, Fryer MJ, Waring J, Reeder B, Bechtold U, Mullineaux PM, Nonell S, Wilson MT, Baker NR. Imaging the production of singlet oxygen in vivo using a new fluorescent sensor, Singlet Oxygen Sensor Green(R). J. Exp. Bot. 57: 1725-1734 (2006).

Flors V, Ton J, van Doorn R, Jakab G, García-Agustín P, Mauch-Mani B. Interplay between JA, SA and ABA signalling during basal and induced resistance against Pseudomonas syringae and Alternaria brassicicola. Plant J. 54: 81-92 (2008).

Fluckiger R, De Caroli M, Piro G, Dalessandro G, Neuhaus JM, Di Sansebastiano GP. Vacuolar system distribution in Arabidopsis tissues, visualized using GFP fusion proteins. J. Exp. Bot. 54: 1577-1584 (2003).

Focke M, Gieringer E, Schwan S, Jansch L, Binder S, Braun HP. Fatty acid biosynthesis in mitochondria of grasses: malonyl-coenzyme A is generated by a mitochondrial localized acetyl-coenzyme A carboxylase. Plant Physiol. 133: 875-884 (2003).

Focks N, Benning C. wrinkled1: A novel, low-seed-oil mutant of Arabidopsis with a deficiency in the seed-specific regulation of carbohydrate metabolism. Plant Physiol. 118: 91-101 (1998).

Focks N, Sagasser M, Weisshaar B, Benning C. Characterization of tt15, a novel transparent testa mutant of Arabidopsis thaliana (L.) Heynh. Planta 208: 352-357 (1999).

Fode B, Siemsen T, Thurow C, Weigel R, Gatz C. The Arabidopsis GRAS protein SCL14 interacts with class II TGA transcription factors and is essential for the activation of stress-inducible promoters. Plant Cell 20: 3122-3135 (2008).

Fofana IB, Sangare A, Collier R, Taylor C, Fauquet CM. A geminivirus-induced gene silencing system for gene function validation in cassava. Plant Mol. Biol. 56: 613-624 (2004).

Foley RC, Sappl PG, Perl-Treves R, Millar AH, Singh KB. Desensitization of GSTF8 induction by a prior chemical treatment is long lasting and operates in a tissue-dependent manner. Plant Physiol. 142: 245-253 (2006).

Folta KM. Green light stimulates early stem elongation, antagonizing light-mediated growth inhibition. Plant Physiol. 135: 1407-1416 (2004).

Folta KM, Kaufman LS. Regions of the pea Lhcb1*4 promoter necessary for blue-light regulation in transgenic Arabidopsis. Plant Physiol. 120: 747-756 (1999).

Folta KM, Kaufman LS. Phototropin 1 is required for high-fluence blue-light-mediated mRNA destabilization. Plant Mol. Biol. 51: 609-618 (2003).

Folta KM, Pontin MA, Karlin-Neumann G, Bottini R, Spalding EP. Genomic and physiological studies of early cryptochrome 1 action demonstrate roles for auxin and gibberellin in the control of hypocotyl growth by blue light. Plant J. 36: 203-214 (2003).

Fontaine JX, Saladino F, Agrimonti C, Bedu M, Terce-Laforgue T, Tetu T, Hirel B, Restivo FM, Dubois F. Control of the synthesis and of the subcellular targeting of the two GDH genes products in leaves and stems of Nicotiana plumbaginifolia and Arabidopsis thaliana. Plant Cell Physiol. 47: 410-418 (2006).

Fontaine V, Hartwell J, Jenkins GI, Nimmo HG. Arabidopsis thaliana contains two phosphoenolpyruvate carboxylase kinase genes with different expression patterns. Plant Cell Environ. 25: 115-122 (2002).

Foo E, Morris SE, Parmenter K, Young N, Wang H, Jones A, Rameau C, Turnbull CG, Beveridge CA. Feedback regulation of xylem cytokinin content is conserved in pea and Arabidopsis. Plant Physiol. 143: 1418-1428 (2007).

Footitt S, Dietrich D, Fait A, Fernie AR, Holdsworth MJ, Baker A, Theodoulou FL. The COMATOSE ABC transporter is required for full fertility in Arabidopsis. Plant Physiol. 144: 1467-1480 (2007).

Footitt S, Marquez J, Schmuths H, Baker A, Theodoulou FL, Holdsworth M. Analysis of the role of COMATOSE and peroxisomal beta-oxidation in the determination of germination potential in Arabidopsis. J. Exp. Bot. 57: 2805-2814 (2006).

Forde BG. Nitrate transporters in plants: structure, function and regulation. Biochim. Biophys. Acta 1465: 219-235 (2000).

Forde BG, Walch-Liu P. Nitrate and glutamate as environmental cues for behavioural responses in plant roots. Plant Cell Environ. 32: 682-693 (2009).

Fordham-Skelton AP, Skipsey M, Eveans IM, Edwards R, Gatehouse JA. Higher plant tyrosine-specific protein phosphatases (PTPs) contain novel amino-terminal domains: expression during embryogenesis. Plant Mol. Biol. 39: 593-605 (1999).

Foresti O, daSilva LL, Denecke J. Overexpression of the Arabidopsis syntaxin PEP12/SYP21 inhibits transport from the prevacuolar compartment to the lytic vacuole in vivo. Plant Cell 18: 2275-2293 (2006).

Forlani G. Differential expression of 5-enol-pyruvyl-shikimate-3-phosphate synthase isoforms in elicitor-treated, cultured maize cells. Funct. Plant Biol. 29: 1483-1490 (2002).

Forlani G, Giberti S, Berlicki L, Petrollino D, Kafarski P. Plant P5C reductase as a new target for aminomethylenebisphosphonates. J. Agric. Food Chem. 55: 4340-4347 (2007).

Forlani G, Mangiagalli A, Pinter C, Nielsen E. Expression of delta(1)-pyrroline-5-carboxylate dehydrogenase and proline/arginine homeostasis in Solanum tuberosum. Physiol. Plant. 110: 22-27 (2000).

Forlani G, Occhipinti A, Berlicki L, Dziedziola G, Wieczorek A, Kafarski P. Tailoring the structure of aminobisphosphonates to target plant P5C reductase. J. Agric. Food Chem. 56: 3193-3199 (2008).

Forment J, Gadea J, Huerta L, Abizanda L, Agusti J, Alamar S, Alos E, Andres F, Arribas R, Beltran JP, Berbel A, Blazquez MA, Brumos J, Canas LA, Cercos M, et al. Development of a citrus genome-wide EST collection and cDNA microarray as resources for genomic studies. Plant Mol. Biol. 57: 375-391 (2005).

Fornale S, Sonbol FM, Maes T, Capellades M, Puigdomenech P, Rigau J, Caparros-Ruiz D. Down-regulation of the maize and Arabidopsis thaliana caffeic acid O-methyl-transferase genes by two new maize R2R3-MYB transcription factors. Plant Mol. Biol. 62: 809-823 (2006).

Fornara F, Gregis V, Pelucchi N, Colombo L, Kater M. The rice StMADS11-like genes OsMADS22 and OsMADS47 cause floral reversions in Arabidopsis without complementing the svp and agl24 mutants. J. Exp. Bot. 59: 2181-2190 (2008).

Fornara F, Parenicova L, Falasca G, Pelucchi N, Masiero S, Ciannamea S, Lopez-Dee Z, Altamura MM, Colombo L, Kater MM. Functional characterization of OsMADS18, a member of the AP1/SQUA subfamily of MADS box genes. Plant Physiol. 135: 2207-2219 (2004).

Forner J, Holzle A, Jonietz C, Thuss S, Schwarzlander M, Weber B, Meyer RC, Binder S. Mitochondrial mRNA polymorphisms in different Arabidopsis thaliana accessions. Plant Physiol. 148: 1106-1116 (2008).

Forreiter C, Kirschner M, Nover L. Stable transformation of an Arabidopsis cell suspension culture with firefly luciferase providing a cellular system for analysis of chaperone activity in vivo. Plant Cell 9: 2171-2181 (1997).

Forsbach A, Schubert D, Lechtenberg B, Gils M, Schmidt R. A comprehensive characterization of single-copy T-DNA insertions in the Arabidopsis thaliana genome. Plant Mol. Biol. 52: 161-176 (2003).

Forsberg J, Strom J, Kieselbach T, Larsson H, Alexciev K, Engstrom A, Akerlund HE. Protease activities in the chloroplast capable of cleaving an LHCII N-terminal peptide. Physiol. Plant. 123: 21-29 (2005).

Fortin MC, Pierce FJ, Poff KL. The pattern of secondary root formation in curving roots of Arabidopsis thaliana (L.) Heynh. Plant Cell Environ. 12: 337-339 (1989).

Fortunati A, Piconese S, Tassone P, Ferrari S, Migliaccio F. A new mutant of Arabidopsis disturbed in its roots, right-handed slanting, and gravitropism defines a gene that encodes a heat-shock factor. J. Exp. Bot. 59: 1363-1374 (2008).

Forward BS, Osusky M, Misra S. The Douglas-fir BiP promoter is functional in Arabidopsis and responds to wounding. Planta 215: 569-576 (2002).

Foster R, Chua NH. An Arabidopsis mutant with deregulated ABA gene expression: implications for negative regulator function. Plant J. 17: 363-372 (1999).

Foster R, Mattsson O, Mundy J. Plants flex their skeletons. Trends Plant Sci. 8: 202-204 (2003).

Fotopoulos V, Gilbert MJ, Pittman JK, Marvier AC, Buchanan AJ, Sauer N, Hall JL, Williams LE. The monosaccharide transporter gene, AtSTP4, and the cell-wall invertase, At{beta}fruct1, are induced in Arabidopsis during infection with the fungal biotroph Erysiphe cichoracearum. Plant Physiol. 132: 821-829 (2003).

Foucher F, Morin J, Courtiade J, Cadioux S, Ellis N, Banfield MJ, Rameau C. DETERMINATE and LATE FLOWERING are two TERMINAL FLOWER1/CENTRORADIALIS homologs that control two distinct phases of flowering initiation and development in pea. Plant Cell 15: 2742-2754 (2003).

Fouquet R, Leon C, Ollat N, Barrieu F. Identification of grapevine aquaporins and expression analysis in developing berries. Plant Cell Rep. 27: 1541-1550 (2008).

Fourcroy P, Vansuyt G, Kushnir S, Inze D, Briat JF. Iron-regulated expression of a cytosolic ascorbate peroxidase encoded by the APX1 gene in Arabidopsis seedlings. Plant Physiol. 134: 605-613 (2004).

Fourgoux-Nicol A, Drouaud J, Haouazine N, Pelletier G, Guerche P. Isolation of rapeseed genes expressed early and specifically during development of the male gametophyte. Plant Mol. Biol. 40: 857-872 (1999).

Fourrier N, Bedard J, Lopez-Juez E, Barbrook A, Bowyer J, Jarvis P, Warren G, Thorlby G. A role for SENSITIVE TO FREEZING2 in protecting chloroplasts against freeze induced damage in Arabidopsis. Plant J. 55: 734-745 (2008).

Fowler SG, Cook D, Thomashow MF. Low temperature induction of Arabidopsis CBF1, 2, and 3 is gated by the circadian clock. Plant Physiol. 137: 961-968 (2005).

Fowler TJ, Bernhardt C, Tierney ML. Characterization and expression of four proline-rich cell wall protein genes in Arabidopsis encoding two distinct subsets of multiple domain proteins. Plant Physiol. 121: 1081-1092 (1999).

Foyer CH, Noctor G. Oxidant and antioxidant signalling in plants: a re-evaluation of the concept of oxidative stress in a physiological context. Plant Cell Environ. 28: 1056-1071 (2005).

Frachisse JM, Colcombet J, Guern J, Barbier-Brygoo H. Characterization of a nitrate-permeable channel able to mediate sustained anion efflux in hypocotyl cells from Arabidopsis thaliana. Plant J. 21: 361-371 (2000).

Frachisse JM, Thomine S, Colcombet J, Guern J, Barbier-Brygoo H. Sulfate is both a substrate and an activator of the voltage-dependent anion channel of Arabidopsis hypocotyl cells. Plant Physiol. 121: 253-262 (1999).

Fragoso S, Espíndola L, Paez-Valencia J, Gamboa A, Camacho Y, Martínez-Barajas E, Coello P. SnRK1 isoforms AKIN10 and AKIN11 are differentially regulated in Arabidopsis plants under phosphate starvation. Plant Physiol. 149: 1906-1916 (2009).

Franca SC, Roberto PG, Marins MA, Puga RD, Rodrigues A, Pereira JO. Biosynthesis of secondary metabolites in sugarcane. Genet. Mol. Biol. 24: 243-250 (2001).

Franceschetti M, Hanfrey C, Scaramagli S, Torrigiani P, Bagni N, Burtin D, Michael AJ. Characterization of monocot and dicot plant S-adenosyl-L-methionine decarboxylase gene families including identification in the mRNA of a highly conserved pair of upstream overlapping open reading frames. Biochem. J. 353: 403-409 (2001).

Franceschi VR, Tarlyn NM. L-Ascorbic acid is accumulated in source leaf phloem and transported to sink tissues in plants. Plant Physiol. 130: 649-656 (2002).

Francis KE, Lam SY, Copenhaver GP. Separation of Arabidopsis pollen tetrads is regulated by QUARTET1, a pectin methylesterase gene. Plant Physiol. 142: 1004-1013 (2006).

Francis KE, Spiker S. Identification of Arabidopsis thaliana transformants without selection reveals a high occurrence of silenced T-DNA integrations. Plant J. 41: 464-477 (2005).

Franck F, Sperling U, Frick G, Pochert B, van Cleve B, Apel K, Armstrong GA. Regulation of etioplast pigment-protein complexes, inner membrane architecture, and protochlorophyllide a chemical heterogeneity by light-dependent NADPH:protochlorophyllide oxidoreductases A and B. Plant Physiol. 124: 1678-1696 (2000).

Franco OL, Melo FR. Osmoprotectants - A plant strategy in response to osmotic stress. Russ. J. Plant Physiol. 47: 137-144 (2000).

Franco-Zorrilla JM, Cubas P, Jarillo JA, Fernandez-Calvin B, Salinas J, Martinez-Zapater JM. AtREM1, a member of a new family of B3 domain-containing genes, is preferentially expressed in reproductive meristems. Plant Physiol. 128: 418-427 (2002).

Franco-Zorrilla JM, Martin AC, Leyva A, Paz-Ares J. Interaction between phosphate-starvation, sugar, and cytokinin signaling in Arabidopsis and the roles of cytokinin receptors CRE1/AHK4 and AHK3. Plant Physiol. 138: 847-857 (2005).

Franco-Zorrilla JM, Martin AC, Solano R, Rubio V, Leyva A, Paz-Ares J. Mutations at CRE1 impair cytokinin-induced repression of phosphate starvation responses in Arabidopsis. Plant J. 32: 353-360 (2002).

Francois IE, De Bolle MF, Dwyer G, Goderis IJ, Woutors PF, Verhaert PD, Proost P, Schaaper WM, Cammue BP, Broekaert WF. Transgenic expression in Arabidopsis of a polyprotein construct leading to production of two different antimicrobial proteins. Plant Physiol. 128: 1346-1358 (2002).

Frangne N, Eggmann T, Koblischke C, Weissenbock G, Martinoia E, Klein M. Flavone glucoside uptake into barley mesophyll and Arabidopsis cell culture vacuoles. Energization occurs by H(+)-antiport and ATP-binding cassette-type mechanisms. Plant Physiol. 128: 726-733 (2002).

Frank J, Kaulfurst-Soboll H, Rips S, Koiwa H, von Schaewen A. Comparative analyses of Arabidopsis complex glycan1 mutants and genetic interaction with staurosporin and temperature sensitive3a. Plant Physiol. 148: 1354-1367 (2008).

Frank M, Rupp HM, Prinsen E, Motyka V, Van Onckelen H, Schmulling T. Hormone autotrophic growth and differentiation identifies mutant lines of Arabidopsis with altered cytokinin and auxin content or signaling. Plant Physiol. 122: 721-730 (2000).

Frank W, Ratnadewi D, Reski R. Physcomitrella patens is highly tolerant against drought, salt and osmotic stress. Planta 220: 384-394 (2005).

Frankard V, Vauterin M, Jacobs M. Molecular characterization of an Arabidopsis thaliana cDNA coding for a monofunctional aspartate kinase. Plant Mol. Biol. 34: 233-242 (1997).

Franke R, Hemm MR, Denault JW, Ruegger MO, Humphreys JM, Chapple C. Changes in secondary metabolism and deposition of an unusual lignin in the ref8 mutant of Arabidopsis. Plant J. 30: 47-59 (2002).

Franke R, Hofer R, Briesen I, Emsermann M, Efremova N, Yephremov A, Schreiber L. The DAISY gene from Arabidopsis encodes a fatty acid elongase condensing enzyme involved in the biosynthesis of aliphatic suberin in roots and the chalaza micropyle region of seeds. Plant J. 57: 80-95 (2009).

Franke R, Humphreys JM, Hemm MR, Denault JW, Ruegger MO, Cusumano JC, Chapple C. The Arabidopsis REF8 gene encodes the 3-hydroxylase of phenylpropanoid metabolism. Plant J. 30: 33-45 (2002).

Franke R, McMichael CM, Meyer K, Shirley AM, Cusumano JC, Chapple C. Modified lignin in tobacco and poplar plants over-expressing the Arabidopsis gene encoding ferulate 5-hydroxylase. Plant J. 22: 223-234 (2000).

Franke R, Schreiber L. Suberin - a biopolyester forming apoplastic plant interfaces. Curr. Opin. Plant Biol. 10: 252-259 (2007).

Franklin KA, Allen T, Whitelam GC. Phytochrome A is an irradiance-dependent red light sensor. Plant J. 50: 108-117 (2007).

Franklin KA, Davis SJ, Stoddart WM, Vierstra RD, Whitelam GC. Mutant analyses define multiple roles for phytochrome C in Arabidopsis photomorphogenesis. Plant Cell 15: 1981-1989 (2003).

Franklin KA, Praekelt U, Stoddart WM, Billingham OE, Halliday KJ, Whitelam GC. Phytochromes B, D, and E act redundantly to control multiple physiological responses in Arabidopsis. Plant Physiol. 131: 1340-1346 (2003).

Franklin KA, Whitelam GC. Light signals, phytochromes and cross-talk with other environmental cues. J. Exp. Bot. 55: 271-276 (2004).

Franks RG, Liu Z, Fischer RL. SEUSS and LEUNIG regulate cell proliferation, vascular development and organ polarity in Arabidopsis petals. Planta 224: 801-811 (2006).

Fraser CM, Rider LW, Chapple C. An expression and bioinformatics analysis of the Arabidopsis serine carboxypeptidase-like gene family. Plant Physiol. 138: 1136-1148 (2005).

Fraser CM, Thompson MG, Shirley AM, Ralph J, Schoenherr JA, Sinlapadech T, Hall MC, Chapple C. Related Arabidopsis serine carboxypeptidase-like sinapoylglucose acyltransferases display distinct but overlapping substrate specificities. Plant Physiol. 144: 1986-1999 (2007).

Fraser PD, Pinto ME, Holloway DE, Bramley PM. Application of high-performance liquid chromatography with photodiode array detection to the metabolic profiling of plant isoprenoids. Plant J. 24: 551-558 (2000).

Fraser TC, Qi B, Elhussein S, Chatrattanakunchai S, Stobart AK, Lazarus CM. Expression of the isochrysis c18-delta9 polyunsaturated fatty acid specific elongase component alters Arabidopsis glycerolipid profiles. Plant Physiol. 135: 859-866 (2004).

Frazzon AP, Ramirez MV, Warek U, Balk J, Frazzon J, Dean DR, Winkel BS. Functional analysis of Arabidopsis genes involved in mitochondrial iron-sulfur cluster assembly. Plant Mol. Biol. 64: 225-240 (2007).

Freeling M, Rapaka L, Lyons E, Pedersen B, Thomas BC. G-boxes, bigfoot genes, and environmental response: characterization of intragenomic conserved noncoding sequences in Arabidopsis. Plant Cell 19: 1441-1457 (2007).

Freeling M, Subramaniam S. Conserved noncoding sequences (CNSs) in higher plants. Curr. Opin. Plant Biol. 12: 126-132 (2009).

Freeman JL, Garcia D, Kim D, Hopf A, Salt DE. Constitutively elevated salicylic acid signals glutathione-mediated nickel tolerance in Thlaspi nickel hyperaccumulators. Plant Physiol. 137: 1082-1091 (2005).

Freeman JL, Persans MW, Nieman K, Albrecht C, Peer W, Pickering IJ, Salt DE. Increased glutathione biosynthesis plays a role in nickel tolerance in thlaspi nickel hyperaccumulators. Plant Cell 16: 2176-2191 (2004).

Freixes S, Thibaud MC, Tardieu F, Muller B. Root elongation and branching is related to local hexose concentration in Arabidopsis thaliana seedlings. Plant Cell Environ. 25: 1357-1366 (2002).

Frelet-Barrand A, Kolukisaoglu HU, Plaza S, Ruffer M, Azevedo L, Hortensteiner S, Marinova K, Weder B, Schulz B, Klein M. Comparative mutant analysis of Arabidopsis ABCC-type ABC transporters: AtMRP2 contributes to detoxification, vacuolar organic anion transport and chlorophyll degradation. Plant Cell Physiol. 49: 557-569 (2008).

Freshour G, Bonin CP, Reiter WD, Albersheim P, Darvill AG, Hahn MG. Distribution of fucose-containing xyloglucans in cell walls of the mur1 mutant of Arabidopsis. Plant Physiol. 131: 1602-1612 (2003).

Frey A, Boutin JP, Sotta B, Mercier R, Marion-Poll A. Regulation of carotenoid and ABA accumulation during the development and germination of Nicotiana plumbaginifolia seeds. Planta 224: 622-632 (2006).

Frick G, Su Q, Apel K, Armstrong GA. An Arabidopsis porB porC double mutant lacking light-dependent NADPH:protochlorophyllide oxidoreductases B and C is highly chlorophyll-deficient and developmentally arrested. Plant J. 35: 141-153 (2003).

Fridborg I, Kuusk S, Moritz T, Sundberg E. The Arabidopsis dwarf mutant shi exhibits reduced gibberellin responses conferred by overexpression of a new putative zinc finger protein. Plant Cell 11: 1019-1032 (1999).

Fridborg I, Kuusk S, Robertson M, Sundberg E. The Arabidopsis protein SHI represses gibberellin responses in Arabidopsis and barley. Plant Physiol. 127: 937-948 (2001).

Fridman E, Zamir D. Functional divergence of a syntenic invertase gene family in tomato, potato, and Arabidopsis. Plant Physiol. 131: 603-609 (2003).

Friedrichsen D, Chory J. Steroid signaling in plants: from the cell surface to the nucleus. Bioessays 23: 1028-1036 (2001).

Friedrichsen DM, Joazeiro CA, Li J, Hunter T, Chory J. Brassinosteroid-insensitive-1 is a ubiquitously expressed leucine-rich repeat receptor serine/threonine Kinase. Plant Physiol. 123: 1247-1256 (2000).

Friesner J, Britt AB. Ku80- and DNA ligase IV-deficient plants are sensitive to ionizing radiation and defective in T-DNA integration. Plant J. 34: 427-440 (2003).

Frigerio M, Alabadi D, Perez-Gomez J, Garcia-Carcel L, Phillips AL, Hedden P, Blazquez MA. Transcriptional regulation of gibberellin metabolism genes by auxin signaling in Arabidopsis. Plant Physiol. 142: 553-563 (2006).

Friml J, Benkova E, Mayer U, Palme K, Muster G. Automated whole mount localisation techniques for plant seedlings. Plant J. 34: 115-124 (2003).

Friso G, Giacomelli L, Ytterberg AJ, Peltier JB, Rudella A, Sun Q, Wijk KJ. In-depth analysis of the thylakoid membrane proteome of Arabidopsis thaliana chloroplasts: new proteins, new functions, and a plastid proteome database. Plant Cell 16: 478-499 (2004).

Frison M, Parrou JL, Guillaumot D, Masquelier D, Francois J, Chaumont F, Batoko H. The Arabidopsis thaliana trehalase is a plasma membrane-bound enzyme with extracellular activity. FEBS Lett. 581: 4010-4016 (2007).

Fritz-Laylin LK, Krishnamurthy N, Tor M, Sjolander KV, Jones JD. Phylogenomic analysis of the receptor-like proteins of rice and Arabidopsis. Plant Physiol. 138: 611-623 (2005).

Fritze IM, Linden L, Freigang J, Auerbach G, Huber R, Steinbacher S. The crystal structures of Zea mays and Arabidopsis 4-hydroxyphenylpyruvate dioxygenase. Plant Physiol. 134: 1388-1400 (2004).

Fritzius T, Aeschbacher R, Wiemken A, Wingler A. Induction of ApL3 expression by trehalose complements the starch-deficient Arabidopsis mutant adg2-1 lacking ApL1, the large subunit of ADP-glucose pyrophosphorylase. Plant Physiol. 126: 883-889 (2001).

Froman BE, Edwards PC, Bursch AG, Dehesh K. ACX3, a novel medium-chain acyl-coenzyme A oxidase from Arabidopsis. Plant Physiol. 123: 733-742 (2000).

Frommer WB, Hummel S, Rentsch D. Cloning of an Arabidopsis histidine transporting protein related to nitrate and peptide transporters. FEBS Lett. 347: 185-189 (1994).

Frommer WB, Kwart M, Hirner B, Fischer WN, Hummel S, Ninnemann O. Transporters for nitrogenous compounds in plants. Plant Mol. Biol. 26: 1651-1670 (1994).

Frugoli JA, Zhong HH, Nuccio ML, McCourt P, McPeek MA, Thomas TL, McClung CR. Catalase is encoded by a multigene family in Arabidopsis thaliana (L.) Heynh. Plant Physiol. 112: 327-336 (1996).

Fry RC, Habashi J, Okamoto H, Deng XW. Characterization of a strong dominant phytochrome a mutation unique to phytochrome A signal propagation. Plant Physiol. 130: 457-465 (2002).

Frye CA, Innes RW. An Arabidopsis mutant with enhanced resistance to powdery mildew. Plant Cell 10: 947-956 (1998).

Fryer MJ, Ball L, Oxborough K, Karpinski S, Mullineaux PM, Baker NR. Control of Ascorbate Peroxidase 2 expression by hydrogen peroxide and leaf water status during excess light stress reveals a functional organisation of Arabidopsis leaves. Plant J. 33: 691-705 (2003).

Fryer MJ, Oxborough K, Mullineaux PM, Baker NR. Imaging of photo-oxidative stress responses in leaves. J. Exp. Bot. 53: 1249-1254 (2002).

Fu H, Doelling JH, Rubin DM, Vierstra RD. Structural and functional analysis of the six regulatory particle triple-A ATPase subunits from the Arabidopsis 26S proteasome. Plant J. 18: 529-539 (1999).

Fu HH, Luan S. AtKuP1: a dual-affinity K+ transporter from Arabidopsis. Plant Cell 10: 63-73 (1998).

Fu S, Rogowsky P, Nover L, Scanlon MJ. The maize heat shock factor-binding protein paralogs EMP2 and HSBP2 interact non-redundantly with specific heat shock factors. Planta 224: 42-52 (2006).

Fu X, Richards DE, Fleck B, Xie D, Burton N, Harberd NP. The Arabidopsis mutant sleepy1gar2-1 protein promotes plant growth by increasing the affinity of the SCFSLY1 E3 ubiquitin ligase for DELLA protein substrates. Plant Cell 16: 1406-1418 (2004).

Fuchs I, Stolzle S, Ivashikina N, Hedrich R. Rice K+ uptake channel OsAKT1 is sensitive to salt stress. Planta 221: 212-221 (2005).

Fuerst RA, Soni R, Murray JA, Lindsey K. Modulation of cyclin transcript levels in cultured cells of Arabidopsis thaliana. Plant Physiol. 112: 1023-1033 (1996).

Fuglsang AT, Borch J, Bych K, Jahn TP, Roepstorff P, Palmgren MG. The binding site for regulatory 14-3-3 protein in plant plasma membrane H+- ATPase: involvement of a region promoting phosphorylation-independent interaction in addition to the phosphorylation-dependent C-terminal end. J. Biol. Chem. 278: 42266-42272 (2003).

Fuglsang AT, Guo Y, Cuin TA, Qiu Q, Song C, Kristiansen KA, Bych K, Schulz A, Shabala S, Schumaker KS, Palmgren MG, Zhu JK. Arabidopsis protein kinase PKS5 inhibits the plasma membrane H+ -ATPase by preventing interaction with 14-3-3 protein. Plant Cell 19: 1617-1634 (2007).

Fuhrmann E, Gathmann S, Rupprecht E, Golecki J, Schneider D. Thylakoid membrane reduction affects the photosystem stoichiometry in the cyanobacterium Synechocystis sp. PCC 6803. Plant Physiol. 149: 735-744 (2009).

Fuji K, Shimada T, Takahashi H, Tamura K, Koumoto Y, Utsumi S, Nishizawa K, Maruyama N, Hara-Nishimura I. Arabidopsis vacuolar sorting mutants (green fluorescent seed) can be identified efficiently by secretion of vacuole-targeted green fluorescent protein in their seeds. Plant Cell 19: 597-609 (2007).

Fujibe T, Saji H, Arakawa K, Yabe N, Takeuchi Y, Yamamoto KT. A methyl viologen-resistant mutant of Arabidopsis, which is allelic to ozone-sensitive rcd1, is tolerant to supplemental ultraviolet-B irradiation. Plant Physiol. 134: 275-285 (2004).

Fujii H, Verslues PE, Zhu JK. Identification of two protein kinases required for abscisic acid regulation of seed germination, root growth, and gene expression in Arabidopsis. Plant Cell 19: 485-494 (2007).

Fujii S, Yamada M, Toriyama K. Cytoplasmic male sterility-related protein kinase, OsNek3, is regulated downstream of mitochondrial protein phosphatase 2C, DCW11. Plant Cell Physiol. 50: 828-837 (2009).

Fujikawa Y, Kato N. Split luciferase complementation assay to study protein-protein interactions in Arabidopsis protoplasts. Plant J. 52: 185-195 (2007).

Fujiki Y, Ito M, Nishida I, Watanabe A. Multiple signaling pathways in gene expression during sugar starvation. Pharmacological analysis of din gene expression in suspension-cultured cells of Arabidopsis. Plant Physiol. 124: 1139-1148 (2000).

Fujiki Y, Yoshimoto K, Ohsumi Y. An Arabidopsis homolog of yeast ATG6/VPS30 is essential for pollen germination. Plant Physiol. 143: 1132-1139 (2007).

Fujikura U, Horiguchi G, Ponce MR, Micol JL, Tsukaya H. Coordination of cell proliferation and cell expansion mediated by ribosome-related processes in the leaves of Arabidopsis thaliana. Plant J. 59: 499-508 (2009).

Fujimori K, Ohta D. An Arabidopsis cDNA encoding a bifunctional glutamine amidotransferase/cyclase suppresses the histidine auxotrophy of a Saccharomyces cerevisiae his7 mutant. FEBS Lett. 428: 229-234 (1998).

Fujimori K, Ohta D. Isolation and characterization of a histidine biosynthetic gene in Arabidopsis encoding a polypeptide with two separate domains for phosphoribosyl-ATP pyrophosphohydrolase and phosphoribosyl-AMP cyclohydrolase. Plant Physiol. 118: 275-283 (1998).

Fujimori K, Ohta D. Heavy metal induction of Arabidopsis serine decarboxylase gene expression. Biosci. Biotechnol. Biochem. 67: 896-898 (2003).

Fujimori K, Tada S, Kanai S, Ohta D. Molecular cloning and characterization of the gene encoding N'-[(5'-phosphoribosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (BBM II) isomerase from Arabidopsis thaliana. Mol. Gen. Genet. 259: 216-223 (1998).

Fujimoto M, Arimura S, Mano S, Kondo M, Saito C, Ueda T, Nakazono M, Nakano A, Nishimura M, Tsutsumi N. Arabidopsis dynamin-related proteins DRP3A and DRP3B are functionally redundant in mitochondrial fission, but have distinct roles in peroxisomal fission. Plant J. 58: 388-400 (2009).

Fujimoto M, Arimura SI, Nakazono M, Tsutsumi N. Arabidopsis dynamin-related protein DRP2B is co-localized with DRP1A on the leading edge of the forming cell plate. Plant Cell Rep. 27: 1581-1586 (2008).

Fujimoto R, Sasaki T, Inoue H, Nishio T. Hypomethylation and transcriptional reactivation of retrotransposon-like sequences in ddm1 transgenic plants of Brassica rapa. Plant Mol. Biol. 66: 463-473 (2008).

Fujimoto S, Yonemura M, Matsunaga S, Nakagawa T, Uchiyama S, Fukui K. Characterization and dynamic analysis of Arabidopsis condensin subunits, AtCAP-H and AtCAP-H2. Planta 222: 293-300 (2005).

Fujimoto SY, Ohta M, Usui A, Shinshi H, Ohme-Takagi M. Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression. Plant Cell 12: 393-404 (2000).

Fujioka S, Takatsuto S, Yoshida S. An early C-22 oxidation branch in the brassinosteroid biosynthetic pathway. Plant Physiol. 130: 930-939 (2002).

Fujioka Y, Utsumi M, Ohba Y, Watanabe Y. Location of a possible miRNA processing site in SmD3/SmB nuclear bodies in Arabidopsis. Plant Cell Physiol. 48: 1243-1253 (2007).

Fujisawa M, Watanabe M, Choi SK, Teramoto M, Ohyama K, Misawa N. Enrichment of carotenoids in flaxseed (Linum usitatissimum) by metabolic engineering with introduction of bacterial phytoene synthase gene crtB. J. Biosci. Bioeng. 105: 636-641 (2008).

Fujita M, Fujita Y, Maruyama K, Seki M, Hiratsu K, Ohme-Takagi M, Tran LS, Yamaguchi-Shinozaki K, Shinozaki K. A dehydration-induced NAC protein, RD26, is involved in a novel ABA-dependent stress-signaling pathway. Plant J. 39: 863-876 (2004).

Fujita S, Ohnishi T, Watanabe B, Yokota T, Takatsuto S, Fujioka S, Yoshida S, Sakata K, Mizutani M. Arabidopsis CYP90B1 catalyses the early C-22 hydroxylation of C27, C28 and C29 sterols. Plant J. 45: 765-774 (2006).

Fujita Y, Fujita M, Satoh R, Maruyama K, Parvez MM, Seki M, Hiratsu K, Ohme-Takagi M, Shinozaki K, Yamaguchi-Shinozaki K. AREB1 is a transcription activator of novel ABRE-dependent ABA signaling that enhances drought stress tolerance in Arabidopsis. Plant Cell 17: 3470-3488 (2005).

Fujitani Y, Horiuchi T, Ito K, Sugimoto M. Serine racemases from barley, Hordeum vulgare L., and other plant species represent a distinct eukaryotic group: gene cloning and recombinant protein characterization. Phytochemistry 68: 1530-1536 (2007).

Fujitani Y, Nakajima N, Ishihara K, Oikawa T, Ito K, Sugimoto M. Molecular and biochemical characterization of a serine racemase from Arabidopsis thaliana. Phytochemistry 67: 668-674 (2006).

Fujiwara MT, Hashimoto H, Kazama Y, Abe T, Yoshida S, Sato N, Itoh RD. The assembly of the FtsZ ring at the mid-chloroplast division site depends on a balance between the activities of AtMinE1 and ARC11/AtMinD1. Plant Cell Physiol. 49: 345-361 (2008).

Fujiwara MT, Sekine K, Yamamoto YY, Abe T, Sato N, Itoh RD. Live imaging of chloroplast FtsZ1 filaments, rings, spirals, and motile dot structures in the AtMinE1 mutant and overexpressor of Arabidopsis thaliana. Plant Cell Physiol. 50: 1116-1126 (2009).

Fujiwara S, Oda A, Yoshida R, Niinuma K, Miyata K, Tomozoe Y, Tajima T, Nakagawa M, Hayashi K, Coupland G, Mizoguchi T. Circadian clock proteins LHY and CCA1 regulate SVP protein accumulation to control flowering in Arabidopsis. Plant Cell 20: 2960-2971 (2008).

Fukaki H, Fujisawa H, Tasaka M. Gravitropic response of inflorescence stems in Arabidopsis thaliana. Plant Physiol. 110: 933-943 (1996).

Fukaki H, Fujisawa H, Tasaka M. SGR1, SGR2, SGR3: novel genetic loci involved in shoot gravitropism in Arabidopsis thaliana. Plant Physiol. 110: 945-955 (1996).

Fukaki H, Nakao Y, Okushima Y, Theologis A, Tasaka M. Tissue-specific expression of stabilized SOLITARY-ROOT/IAA14 alters lateral root development in Arabidopsis. Plant J. 44: 382-395 (2005).

Fukaki H, Taniguchi N, Tasaka M. PICKLE is required for SOLITARY-ROOT/IAA14-mediated repression of ARF7 and ARF19 activity during Arabidopsis lateral root initiation. Plant J. 48: 380-389 (2006).

Fukaki H, Tasaka M. Hormone interactions during lateral root formation. Plant Mol. Biol. 69: 437-449 (2009).

Fukuchi-Mizutani M, Mizutani M, Tanaka Y, Kusumi T, Ohta D. Microsomal electron transfer in higher plants: cloning and heterologous expression of NADH-cytochrome b5 reductase from Arabidopsis. Plant Physiol. 119: 353-362 (1999).

Fukusaki E, Kobayashi A. Plant metabolomics: potential for practical operation. J. Biosci. Bioeng. 100: 347-354 (2005).

Fukuta N, Fujioka S, Takatsuto S, Yoshida S, Fukuta Y, Nakayama M. 'Rinrei', a brassinosteroid-deficient dwarf mutant of faba bean (Vicia faba). Physiol. Plant. 121: 506-512 (2004).

Fulda M, Schnurr J, Abbadi A, Heinz E, Browse J. Peroxisomal acyl-CoA synthetase activity is essential for seedling development in Arabidopsis thaliana. Plant Cell 16: 394-405 (2004).

Fulda M, Shockey J, Werber M, Wolter FP, Heinz E. Two long-chain acyl-CoA synthetases from Arabidopsis thaliana involved in peroxisomal fatty acid beta-oxidation. Plant J. 32: 93-103 (2002).

Fulton LM, Cobbett CS. Two alpha-L-arabinofuranosidase genes in Arabidopsis thaliana are differentially expressed during vegetative growth and flower development. J. Exp. Bot. 54: 2467-2477 (2003).

Fulton TM, Van Der Hoeven R, Eannetta NT, Tanksley SD. Identification, analysis, and utilization of conserved ortholog set markers for comparative genomics in higher plants. Plant Cell 14: 1457-1467 (2002).

Funck D, Stadelhofer B, Koch W. Ornithine-delta-aminotransferase is essential for arginine catabolism but not for proline biosynthesis. BMC Plant Biol. 8: 40 (2008).

Funes S, Gerdes L, Inaba M, Soll J, Herrmann JM. The Arabidopsis thaliana chloroplast inner envelope protein ARTEMIS is a functional member of the Alb3/Oxa1/YidC family of proteins. FEBS Lett. 569: 89-93 (2004).

Funk V, Kositsup B, Zhao C, Beers EP. The Arabidopsis xylem peptidase XCP1 is a tracheary element vacuolar protein that may be a papain ortholog. Plant Physiol. 128: 84-94 (2002).

Furihata T, Maruyama K, Fujita Y, Umezawa T, Yoshida R, Shinozaki K, Yamaguchi-Shinozaki K. Abscisic acid-dependent multisite phosphorylation regulates the activity of a transcription activator AREB1. Proc. Natl. Acad. Sci. U.S.A. 103: 1988-1993 (2006).

Furini A, Parcy F, Salamini F, Bartels D. Differential regulation of two ABA-inducible genes from Craterostigma plantagineum in transgenic Arabidopsis plants. Plant Mol. Biol. 30: 343-349 (1996).

Furner I, Ellis L, Bakht S, Mirza B, Sheikh M. CAUT lines: a novel resource for studies of cell autonomy in Arabidopsis. Plant J. 53: 645-660 (2008).

Fusaro AF, Bocca SN, Ramos RL, Barroco RM, Magioli C, Jorge VC, Coutinho TC, Rangel-Lima CM, De Rycke R, Inze D, Engler G, Sachetto-Martins G. AtGRP2, a cold-induced nucleo-cytoplasmic RNA-binding protein, has a role in flower and seed development. Planta 225: 1339-1351 (2007).

Gable K, Garton S, Napier JA, Dunn TM. Functional characterization of the Arabidopsis thaliana orthologue of Tsc13p, the enoyl reductase of the yeast microsomal fatty acid elongating system. J. Exp. Bot. 55: 543-545 (2004).

Gabrielson KM, Cancel JD, Morua LF, Larsen PB. Identification of dominant mutations that confer increased aluminium tolerance through mutagenesis of the Al-sensitive Arabidopsis mutant, als3-1. J. Exp. Bot. 57: 943-951 (2006).

Gachon CM, Langlois-Meurinne M, Henry Y, Saindrenan P. Transcriptional co-regulation of secondary metabolism enzymes in Arabidopsis: functional and evolutionary implications. Plant Mol. Biol. 58: 229-245 (2005).

Gadjev I, Vanderauwera S, Gechev TS, Laloi C, Minkov IN, Shulaev V, Apel K, Inze D, Mittler R, Van Breusegem F. Transcriptomic footprints disclose specificity of reactive oxygen species signaling in Arabidopsis. Plant Physiol. 141: 436-445 (2006).

Gagete AP, Riera M, Franco L, Rodrigo MI. Functional analysis of the isoforms of an ABI3-like factor of Pisum sativum generated by alternative splicing. J. Exp. Bot. 60: 1703-1714 (2009).

Gago GM, Almoguera C, Jordano J, Gonzalez DH, Chan RL. Hahb-4, a homeobox-leucine zipper gene potentially involved in abscisic acid-dependent responses to water stress in sunflower. Plant Cell Environ. 25: 633-640 (2002).

Gahoonia TS, Nielsen NE. Phosphorus (P) uptake and growth of a root hairless barley mutant (bald root barley, brb) and wild type in low- and high-P soils. Plant Cell Environ. 26: 1759-1766 (2003).

Gaiser JC, Robinson-Beers K, Gasser CS. The Arabidopsis SUPERMAN gene mediates asymmetric growth of the outer integument of ovules. Plant Cell 7: 333-345 (1995).

Gaj MD, Zhang S, Harada JJ, Lemaux PG. Leafy cotyledon genes are essential for induction of somatic embryogenesis of Arabidopsis. Planta 222: 977-988 (2005).

Gakiere B, Denis L, Droux M, Job D. Over-expression of cystathionine gamma-synthase in Arabidopsis thaliana leads to increased levels of methionine and S- methylmethionine. Plant Physiol. Biochem. 40: 119-126 (2002).

Gakiere B, Ravanel S, Droux M, Douce R, Job D. Mechanisms to account for maintenance of the soluble methionine pool in transgenic Arabidopsis plants expressing antisense cystathionine gamma-synthase cDNA. C. R. Acad. Sci. III 323: 841-851 (2000).

Galaud JP, Laval V, Carriere M, Barre A, Canut H, Rouge P, Pont-Lezica R. Osmotic stress activated expression of an Arabidopsis plasma membrane-associated protein: sequence and predicted secondary structure. Biochim. Biophys. Acta 1341: 79-86 (1997).

Galbiati M, Simoni L, Pavesi G, Cominelli E, Francia P, Vavasseur A, Nelson T, Bevan M, Tonelli C. Gene trap lines identify Arabidopsis genes expressed in stomatal guard cells. Plant J. 53: 750-762 (2008).

Galbraith DW, Birnbaum K. Global studies of cell type-specific gene expression in plants. Annu. Rev. Plant Biol. 57: 451-475 (2006).

Galichet A, Gruissem W. Developmentally controlled farnesylation modulates AtNAP1;1 function in cell proliferation and cell expansion during Arabidopsis leaf development. Plant Physiol. 142: 1412-1426 (2006).

Galili G, Tang GL, Zhu XH, Karchi H, Miron D, Gakiere B, Stepansky A. Molecular genetic dissection and potential manipulation of lysine metabolism in seeds. J. Plant Physiol. 158: 515-520 (2001).

Gallagher KL, Benfey PN. Both the conserved GRAS domain and nuclear localization are required for SHORT-ROOT movement. Plant J. 57: 785-797 (2009).

Gallardo K, Job C, Groot SP, Puype M, Demol H, Vandekerckhove J, Job D. Proteomic analysis of Arabidopsis seed germination and priming. Plant Physiol. 126: 835-848 (2001).

Gallardo K, Job C, Groot SP, Puype M, Demol H, Vandekerckhove J, Job D. Proteomics of Arabidopsis seed germination. A comparative study of wild-type and gibberellin-deficient seeds. Plant Physiol. 129: 823-837 (2002).

Gallavotti A, Yang Y, Schmidt RJ, Jackson D. The relationship between auxin transport and maize branching. Plant Physiol. 147: 1913-1923 (2008).

Gallego ME, Bleuyard JY, Daoudal-Cotterell S, Jallut N, White CI. Ku80 plays a role in non-homologous recombination but is not required for T-DNA integration in Arabidopsis. Plant J. 35: 557-565 (2003).

Gallego ME, Sirand-Pugnet P, White CI. Positive-negative selection and T-DNA stability in Arabidopsis transformation. Plant Mol. Biol. 39: 83-93 (1999).

Galletti R, Denoux C, Gambetta S, Dewdney J, Ausubel FM, Lorenzo GD, Ferrari S. The AtrbohD-mediated oxidative burst elicited by oligogalacturonides in Arabidopsis thaliana is dispensable for the activation of defense responses effective against Botrytis cinerea. Plant Physiol. 148: 1695-1706 (2008).

Gallois JL, Guyon-Debast A, Lecureuil A, Vezon D, Carpentier V, Bonhomme S, Guerche P. The Arabidopsis proteasome RPT5 subunits are essential for gametophyte development and show accession-dependent redundancy. Plant Cell 21: 442-459 (2009).

Galuszka P, Frebort I, Sebela M, Sauer P, Jacobsen S, Pec P. Cytokinin oxidase or dehydrogenase? Mechanism of cytokinin degradation in cereals. Eur. J. Biochem. 268: 450-461 (2001).

Galuszka P, Frebortova J, Werner T, Yamada M, Strnad M, Schmulling T, Frebort I. Cytokinin oxidase/dehydrogenase genes in barley and wheat: cloning and heterologous expression. Eur. J. Biochem. 271: 3990-4002 (2004).

Galuszka P, Frebortova J, Werner T, Yamada M, Strnad M, Schmulling T, Frebort I. Cytokinin oxidase/dehydrogenase genes in barley and wheat: cloning and heterologous expression. Eur. J. Biochem. 271: 3990-4002 (2004).

Galway ME, Heckman JW Jr, Schiefelbein JW. Growth and ultrastructure of Arabidopsis root hairs: the rhd3 mutation alters vacuole enlargement and tip growth. Planta 201: 209-218 (1997).

Gamble RL, Coonfield ML, Schaller GE. Histidine kinase activity of the ETR1 ethylene receptor from Arabidopsis. Proc. Natl. Acad. Sci. U.S.A. 95: 7825-7829 (1998).

Gamble RL, Qu X, Schaller GE. Mutational analysis of the ethylene receptor ETR1. Role of the histidine kinase domain in dominant ethylene insensitivity. Plant Physiol. 128: 1428-1438 (2002).

Gan Y, Filleur S, Rahman A, Gotensparre S, Forde BG. Nutritional regulation of ANR1 and other root-expressed MADS-box genes in Arabidopsis thaliana. Planta 222: 730-742 (2005).

Gan Y, Kumimoto R, Liu C, Ratcliffe O, Yu H, Broun P. GLABROUS INFLORESCENCE STEMS modulates the regulation by gibberellins of epidermal differentiation and shoot maturation in Arabidopsis. Plant Cell 18: 1383-1395 (2006).

Ganal MW, Altmann T, Roder MS. SNP identification in crop plants. Curr. Opin. Plant Biol. 12: 211-217 (2009).

Gandia-Herrero F, Lorenz A, Larson T, Graham IA, Bowles DJ, Rylott EL, Bruce NC. Detoxification of the explosive 2,4,6-trinitrotoluene in Arabidopsis- discovery of bifunctional O- and C-glucosyltransferases. Plant J. 56: 963-974 (2008).

Ganeteg U, Klimmek F, Jansson S. Lhca5 - an LHC-type protein associated with photosystem I. Plant Mol. Biol. 54: 641-651 (2004).

Ganeteg U, Kulheim C, Andersson J, Jansson S. Is each light-harvesting complex protein important for plant fitness? Plant Physiol. 134: 502-509 (2004).

Ganeteg U, Strand A, Gustafsson P, Jansson S. The properties of the chlorophyll a/b-binding proteins Lhca2 and Lhca3 studied in vivo using antisense inhibition. Plant Physiol. 127: 150-158 (2001).

Gang DR, Beuerle T, Ullmann P, Werck-Reichhart D, Pichersky E. Differential production of meta hydroxylated phenylpropanoids in sweet basil peltate glandular trichomes and leaves is controlled by the activities of specific acyltransferases and hydroxylases. Plant Physiol. 130: 1536-1544 (2002).

Gansel X, Munos S, Tillard P, Gojon A. Differential regulation of the NO3- and NH4+ transporter genes AtNrt2.1 and AtAmt1.1 in Arabidopsis: relation with long-distance and local controls by N status of the plant. Plant J. 26: 143-155 (2001).

Gantulga D, Turan Y, Bevan DR, Esen A. The Arabidopsis At1g45130 and At3g52840 genes encode beta-galactosidases with activity toward cell wall polysaccharides. Phytochemistry 69: 1661-1670 (2008).

Gao D, Knight MR, Trewavas AJ, Sattelmacher B, Plieth C. Self-reporting Arabidopsis expressing pH and [Ca2+] indicators unveil ion dynamics in the cytoplasm and in the apoplast under abiotic stress. Plant Physiol. 134: 898-908 (2004).

Gao F, Gao Q, Duan X, Yue G, Yang A, Zhang J. Cloning of an H+-PPase gene from Thellungiella halophila and its heterologous expression to improve tobacco salt tolerance. J. Exp. Bot. 57: 3259-3270 (2006).

Gao L, Xiang CB. The genetic locus At1g73660 encodes a putative MAPKKK and negatively regulates salt tolerance in Arabidopsis. Plant Mol. Biol. 67: 125-134 (2008).

Gao MJ, Lydiate DJ, Li X, Lui H, Gjetvaj B, Hegedus DD, Rozwadowski K. Repression of seed maturation genes by a trihelix transcriptional repressor in Arabidopsis seedlings. Plant Cell 21: 54-71 (2009).

Gao MJ, Schafer UA, Parkin IA, Hegedus DD, Lydiate DJ, Hannoufa A. A novel protein from Brassica napus has a putative KID domain and responds to low temperature. Plant J. 33: 1073-1086 (2003).

Gao X, Marrison JL, Pool MR, Leech RM, Baker A. Castor bean isocitrate lyase lacking the putative peroxisomal targeting signal 1 ARM is imported into plant peroxisomes both in vitro and in vivo. Plant Physiol. 112: 1457-1464 (1996).

Gao X, Ren Z, Zhao Y, Zhang H. Overexpression of SOD2 increases salt tolerance of Arabidopsis. Plant Physiol. 133: 1873-1881 (2003).

Gao XQ, Li CG, Wei PC, Zhang XY, Chen J, Wang XC. The dynamic changes of tonoplasts in guard cells are important for stomatal movement in Vicia faba. Plant Physiol. 139: 1207-1216 (2005).

Gao Y, Wang S, Asami T, Chen JG. Loss-of-function mutations in the Arabidopsis heterotrimeric G-protein alpha subunit enhance the developmental defects of brassinosteroid signaling and biosynthesis mutants. Plant Cell Physiol. 49: 1013-1024 (2008).

Gao Y, Zeng Q, Guo J, Cheng J, Ellis BE, Chen JG. Genetic characterization reveals no role for the reported ABA receptor, GCR2, in ABA control of seed germination and early seedling development in Arabidopsis. Plant J. 52: 1001-1013 (2007).

Gao YP, Young L, Bonham-Smith P, Gusta LV. Characterization and expression of plasma and tonoplast membrane aquaporins in primed seed of Brassica napus during germination under stress conditions. Plant Mol. Biol. 40: 635-644 (1999).

Gao-Rubinelli F, Marzluf GA. Identification and characterization of a nitrate transporter gene in Neurospora crassa. Biochem. Genet. 42: 21-34 (2004).

Garcia D, Fitz Gerald JN, Berger F. Maternal control of integument cell elongation and zygotic control of endosperm growth are coordinated to determine seed size in Arabidopsis. Plant Cell 17: 52-60 (2005).

Garcia D, Saingery V, Chambrier P, Mayer U, Jurgens G, Berger F. Arabidopsis haiku mutants reveal new controls of seed size by endosperm. Plant Physiol. 131: 1661-1670 (2003).

Garcia EL, Mourad GS. A site-directed mutagenesis interrogation of the carboxy-terminal end of Arabidopsis thaliana threonine dehydratase/deaminase reveals a synergistic interaction between two effector-binding sites and contributes to the development of a novel selectable … Plant Mol. Biol. 55: 121-134 (2004).

Garcia I, Rodgers M, Pepin R, Hsieh TF, Matringe M. Characterization and subcellular compartmentation of recombinant 4-hydroxyphenylpyruvate dioxygenase from Arabidopsis in transgenic tobacco. Plant Physiol. 119: 1507-1516 (1999).

Garcia M, Myouga F, Takechi K, Sato H, Nabeshima K, Nagata N, Takio S, Shinozaki K, Takano H. An Arabidopsis homolog of the bacterial peptidoglycan synthesis enzyme MurE has an essential role in chloroplast development. Plant J. 53: 924-934 (2008).

Garcia ME, Lynch T, Peeters J, Snowden C, Finkelstein R. A small plant-specific protein family of ABI five binding proteins (AFPs) regulates stress response in germinating Arabidopsis seeds and seedlings. Plant Mol. Biol. 67: 643-658 (2008).

Garcia V, Bruchet H, Camescasse D, Granier F, Bouchez D, Tissier A. AtATM is essential for meiosis and the somatic response to DNA damage in plants. Plant Cell 15: 119-132 (2003).

Garcia-Cerdan JG, Sveshnikov D, Dewez D, Jansson S, Funk C, Schroder WP. Antisense inhibition of the PsbX protein affects PSII integrity in the higher plant Arabidopsis thaliana. Plant Cell Physiol. 50: 191-202 (2009).

Garcia-Hernandez M, Murphy A, Taiz L. Metallothioneins 1 and 2 have distinct but overlapping expression patterns in Arabidopsis. Plant Physiol. 118: 387-397 (1998).

Garcia-Mata C, Gay R, Sokolovski S, Hills A, Lamattina L, Blatt MR. Nitric oxide regulates K+ and Cl- channels in guard cells through a subset of abscisic acid-evoked signaling pathways. Proc. Natl. Acad. Sci. U.S.A. 100: 11116-11121 (2003).

Garcia-Ortiz MV, Ariza RR, Hoffman PD, Hays JB, Roldan-Arjona T. Arabidopsis thaliana AtPOLK encodes a DinB-like DNA polymerase that extends mispaired primer termini and is highly expressed in a variety of tissues. Plant J. 39: 84-97 (2004).

Garcia-Ortiz MV, Ariza RR, Roldan-Arjona T. An OGG1 orthologue encoding a functional 8-oxoguanine DNA glycosylase/lyase in Arabidopsis thaliana. Plant Mol. Biol. 47: 795-804 (2001).

Garciadeblas B, Barrero-Gil J, Benito B, Rodríguez-Navarro A. Potassium transport systems in the moss Physcomitrella patens: pphak1 plants reveal the complexity of potassium uptake. Plant J. 52: 1080-1093 (2007).

Garciadeblas B, Haro R, Benito B. Cloning of two SOS1 transporters from the seagrass Cymodocea nodosa. SOS1 transporters from Cymodocea and Arabidopsis mediate potassium uptake in bacteria. Plant Mol. Biol. 63: 479-490 (2007).

Garciarrubio A, Legaria JP, Covarrubias AA. Abscisic acid inhibits germination of mature Arabidopsis seeds by limiting the availability of energy and nutrients. Planta 203: 182-187 (1997).

Garcion C, Guilleminot J, Kroj T, Parcy F, Giraudat J, Devic M. AKRP and EMB506 are two ankyrin repeat proteins essential for plastid differentiation and plant development in Arabidopsis. Plant J. 48: 895-906 (2006).

Gardiner JC, Harper JD, Weerakoon ND, Collings DA, Ritchie S, Gilroy S, Cyr RJ, Marc J. A 90-kD phospholipase D from tobacco binds to microtubules and the plasma membrane. Plant Cell 13: 2143-2158 (2001).

Gardiner JC, Taylor NG, Turner SR. Control of cellulose synthase complex localization in developing xylem. Plant Cell 15: 1740-1748 (2003).

Garg AK, Sawers RJ, Wang H, Kim JK, Walker JM, Brutnell TP, Parthasarathy MV, Vierstra RD, Wu RJ. Light-regulated overexpression of an Arabidopsis phytochrome A gene in rice alters plant architecture and increases grain yield. Planta 223: 627-636 (2006).

Gargantini PR, Giammaria V, Grandellis C, Feingold SE, Maldonado S, Ulloa RM. Genomic and functional characterization of StCDPK1. Plant Mol. Biol. 70: 153-172 (2009).

Garlick AP, Moore C, Kruger NJ. Monitoring flux through the oxidative pentose phosphate pathway using [1-(14)C]gluconate. Planta 216: 265-272 (2002).

Garmier M, Carroll AJ, Delannoy E, Vallet C, Day DA, Small ID, Millar AH. Complex I dysfunction redirects cellular and mitochondrial metabolism in Arabidopsis. Plant Physiol. 148: 1324-1341 (2008).

Garton S, Knight H, Warren GJ, Knight MR, Thorlby GJ. crinkled leaves 8 - a mutation in the large subunit of ribonucleotide reductase - leads to defects in leaf development and chloroplast division in Arabidopsis thaliana. Plant J. 50: 118-127 (2007).

Garwe D, Thomson JA, Mundree SG. Molecular characterization of XVSAP1, a stress-responsive gene from the resurrection plant Xerophyta viscosa Baker. J. Exp. Bot. 54: 191-201 (2003).

Garzon M, Eifler K, Faust A, Scheel H, Hofmann K, Koncz C, Yephremov A, Bachmair A. PRT6/At5g02310 encodes an Arabidopsis ubiquitin ligase of the N-end rule pathway with arginine specificity and is not the CER3 locus. FEBS Lett. 581: 3189-3196 (2007).

Gas E, Flores-Perez U, Sauret-Gueto S, Rodriguez-Concepcion M. Hunting for plant nitric oxide synthase provides new evidence of a central role for plastids in nitric oxide metabolism. Plant Cell 21: 18-23 (2009).

Gasic K, Korban SS. Transgenic Indian mustard (Brassica juncea) plants expressing an Arabidopsis phytochelatin synthase (AtPCS1) exhibit enhanced As and Cd tolerance. Plant Mol. Biol. 64: 361-369 (2007).

Gasic K, Korban SS. Expression of Arabidopsis phytochelatin synthase in Indian mustard (Brassica juncea) plants enhances tolerance for Cd and Zn. Planta 225: 1277-1285 (2007).

Gaspar M, Sissoeff I, Bousser A, Roche O, Mahe A, Hoarau J. Transient variations of water transfer induced by HgCl2 in excised roots of young maize plants: new data on the inhibition process. Aust. J. Plant Physiol. 28: 1175-1186 (2001).

Gaspar YM, Nam J, Schultz CJ, Lee LY, Gilson PR, Gelvin SB, Bacic A. Characterization of the Arabidopsis lysine-rich arabinogalactan-protein AtAGP17 mutant (rat1) that results in a decreased efficiency of Agrobacterium transformation. Plant Physiol. 135: 2162-2171 (2004).

Gattolin S, Alandete-Saez M, Elliott K, Gonzalez-Carranza Z, Naomab E, Powell C, Roberts JA. Spatial and temporal expression of the response regulators ARR22 and ARR24 in Arabidopsis thaliana. J. Exp. Bot. 57: 4225-4233 (2006).

Gatzek S, Wheeler GL, Smirnoff N. Antisense suppression of l-galactose dehydrogenase in Arabidopsis thaliana provides evidence for its role in ascorbate synthesis and reveals light modulated l-galactose synthesis. Plant J. 30: 541-553 (2002).

Gaubier P, Wu HJ, Laudie M, Delseny M, Grellet F. A chlorophyll synthetase gene from Arabidopsis thaliana. Mol. Gen. Genet. 249: 58-64 (1995).

Gaude N, Brehelin C, Tischendorf G, Kessler F, Dormann P. Nitrogen deficiency in Arabidopsis affects galactolipid composition and gene expression and results in accumulation of fatty acid phytyl esters. Plant J. 49: 729-739 (2007).

Gaude N, Nakamura Y, Scheible WR, Ohta H, Dörmann P. Phospholipase C5 (NPC5) is involved in galactolipid accumulation during phosphate limitation in leaves of Arabidopsis. Plant J. 56: 28-39 (2008).

Gaulin E, Drame N, Lafitte C, Torto-Alalibo T, Martinez Y, Ameline-Torregrosa C, Khatib M, Mazarguil H, Villalba-Mateos F, Kamoun S, Mazars C, Dumas B, Bottin A, Esquerre-Tugaye MT, Rickauer M. Cellulose binding domains of a Phytophthora cell wall protein are novel pathogen-associated molecular patterns. Plant Cell 18: 1766-1777 (2006).

Gavidia I, Perez-Bermudez P, Seitz HU. Cloning and expression of two novel aldo-keto reductases from Digitalis purpurea leaves. Eur. J. Biochem. 269: 2842-2850 (2002).

Gayet L, Picault N, Cazale AC, Beyly A, Lucas P, Jacquet H, Suso HP, Vavasseur A, Peltier G, Forestier C. Transport of antimony salts by Arabidopsis thaliana protoplasts over-expressing the human multidrug resistance-associated protein 1 (MRP1/ABCC1). FEBS Lett. 580: 6891-6897 (2006).

Gaymard F, Boucherez J, Briat JF. Characterization of a ferritin mRNA from Arabidopsis thaliana accumulated in response to iron through an oxidative pathway independent of abscisic acid. Biochem. J. 318: 67-73 (1996).

Gaymard F, Pilot G, Lacombe B, Bouchez D, Bruneau D, Boucherez J, Michaux-Ferriere N, Thibaud JB, Sentenac H. Identification and disruption of a plant shaker-like outward channel involved in K+ release into the xylem sap. Cell 94: 647-655 (1998).

Gazzani S, Gendall AR, Lister C, Dean C. Analysis of the molecular basis of flowering time variation in Arabidopsis accessions. Plant Physiol. 132: 1107-1114 (2003).

Gazzani S, Lawrenson T, Woodward C, Headon D, Sablowski R. A link between mRNA turnover and RNA interference in Arabidopsis. Science 306: 1046-1048 (2004).

Gazzarrini S, Lejay L, Gojon A, Ninnemann O, Frommer WB, von Wiren N. Three functional transporters for constitutive, diurnally regulated, and starvation-induced uptake of ammonium into Arabidopsis roots. Plant Cell 11: 937-948 (1999).

Gazzarrini S, McCourt P. Cross-talk in plant hormone signalling: what Arabidopsis mutants are telling us. Ann. Bot. (Lond.) 91: 605-612 (2003).

Ge C, Cui X, Wang Y, Hu Y, Fu Z, Zhang D, Cheng Z, Li J. BUD2, encoding an S-adenosylmethionine decarboxylase, is required for Arabidopsis growth and development. Cell. Res. 16: 446-456 (2006).

Ge L, Chen H, Jiang JF, Zhao Y, Xu ML, Xu YY, Tan KH, Xu ZH, Chong K. Overexpression of OsRAA1 causes pleiotropic phenotypes in transgenic rice plants, including altered leaf, flower, and root development and root response to gravity. Plant Physiol. 135: 1502-1513 (2004).

Ge X, Wang H, Cao K. Transformation by T-DNA integration causes highly sterile phenotype independent of transgenes in Arabidopsis thaliana. Plant Cell Rep. 27: 1341-1348 (2008).

Gebbie LK, Burn JE, Hocart CH, Williamson RE. Genes encoding ADP-ribosylation factors in Arabidopsis thaliana L. Heyn.; genome analysis and antisense suppression. J. Exp. Bot. 56: 1079-1091 (2005).

Gebert M, Dresselhaus T, Sprunck S. F-actin organization and pollen tube tip growth in Arabidopsis are dependent on the gametophyte-specific armadillo repeat protein ARO1. Plant Cell 20: 2798-2814 (2008).

Gebhardt C, Walkemeier B, Henselewski H, Barakat A, Delseny M, Stuber K. Comparative mapping between potato (Solanum tuberosum) and Arabidopsis thaliana reveals structurally conserved domains and ancient duplications in the potato genome. Plant J. 34: 529-541 (2003).

Geelen D, Lurin C, Bouchez D, Frachisse JM, Lelievre F, Courtial B, Barbier-Brygoo H, Maurel C. Disruption of putative anion channel gene AtCLC-a in Arabidopsis suggests a role in the regulation of nitrate content. Plant J. 21: 259-267 (2000).

Geiger D, Becker D, Vosloh D, Gambale F, Palme K, Rehers M, Anschuetz U, Dreyer I, Kudla J, Hedrich R. Heteromeric AtKC1.AKT1 channels in Arabidopsis roots facilitate growth under K+-limiting conditions. J. Biol. Chem. 284: 21288-21295 (2009).

Geisler M, Blakeslee JJ, Bouchard R, Lee OR, Vincenzetti V, Bandyopadhyay A, Titapiwatanakun B, Peer WA, Bailly A, Richards EL, Ejendal KF, Smith AP, Baroux C, Grossniklaus U, Muller A, Hrycyna CA, Dudler R, Murphy AS, Martinoia E. Cellular efflux of auxin catalyzed by the Arabidopsis MDR/PGP transporter AtPGP1. Plant J. 44: 179-194 (2005).

Geisler M, Frangne N, Gomes E, Martinoia E, Palmgren MG. The ACA4 gene of Arabidopsis encodes a vacuolar membrane calcium pump that improves salt tolerance in yeast. Plant Physiol. 124: 1814-1827 (2000).

Geisler M, Jablonska B, Springer PS. Enhancer trap expression patterns provide a novel teaching resource. Plant Physiol. 130: 1747-1753 (2002).

Geisler M, Kleczkowski LA, Karpinski S. A universal algorithm for genome-wide in silicio identification of biologically significant gene promoter putative cis-regulatory-elements; identification of new elements for reactive oxygen species and sucrose signaling in Arabidopsis. Plant J. 45: 384-398 (2006).

Geisler M, Murphy AS. The ABC of auxin transport: the role of P-glycoproteins in plant development. FEBS Lett. 580: 1094-1102 (2006).

Geisler M, Wilczynska M, Karpinski S, Kleczkowski LA. Toward a blueprint for UDP-glucose pyrophosphorylase structure/function properties: homology-modeling analyses. Plant Mol. Biol. 56: 783-794 (2004).

Geisler MJ, Deppong DO, Nadeau JA, Sack FD. Stomatal neighbor cell polarity and division in Arabidopsis. Planta 216: 571-579 (2003).

Geisler-Lee J, Gallie DR. Aleurone cell identity is suppressed following connation in maize kernels. Plant Physiol. 139: 204-212 (2005).

Geisler-Lee J, Geisler M, Coutinho PM, Segerman B, Nishikubo N, Takahashi J, Aspeborg H, Djerbi S, Master E, Andersson-Gunneras S, Sundberg B, Karpinski S, Teeri TT, Kleczkowski LA, Henrissat B, Mellerowicz EJ. Poplar carbohydrate-active enzymes. Gene identification and expression analyses. Plant Physiol. 140: 946-962 (2006).

Geisler-Lee J, O'Toole N, Ammar R, Provart NJ, Millar AH, Geisler M. A predicted interactome for Arabidopsis. Plant Physiol. 145: 317-329 (2007).

Geldner N. The plant endosomal system-its structure and role in signal transduction and plant development. Planta 219: 547-560 (2004).

Geldner N, Denervaud-Tendon V, Hyman DL, Mayer U, Stierhof YD, Chory J. Rapid, combinatorial analysis of membrane compartments in intact plants with a multicolor marker set. Plant J. 59: 169-178 (2009).

Gendreau E, Orbovic V, Hofte H, Traas J. Gibberellin and ethylene control endoreduplication levels in the Arabidopsis thaliana hypocotyl. Planta 209: 513-516 (1999).

Gendreau E, Traas J, Desnos T, Grandjean O, Caboche M, Hofte H. Cellular basis of hypocotyl growth in Arabidopsis thaliana. Plant Physiol. 114: 295-305 (1997).

Gendrel AV, Colot V. Arabidopsis epigenetics: when RNA meets chromatin. Curr. Opin. Plant Biol. 8: 142-147 (2005).

Genger RK, Kovac KA, Dennis ES, Peacock WJ, Finnegan EJ. Multiple DNA methyltransferase genes in Arabidopsis thaliana. Plant Mol. Biol. 41: 269-278 (1999).

Genger RK, Peacock WJ, Dennis ES, Finnegan EJ. Opposing effects of reduced DNA methylation on flowering time in Arabidopsis thaliana. Planta 216: 461-466 (2003).

Gennidakis S, Rao S, Greenham K, Uhrig RG, O'Leary B, Snedden WA, Lu C, Plaxton WC. Bacterial- and plant-type phosphoenolpyruvate carboxylase polypeptides interact in the hetero-oligomeric class-2 PEPC complex of developing castor oil seeds. Plant J. 52: 839-849 (2007).

Genoud T, Buchala AJ, Chua NH, Metraux JP. Phytochrome signalling modulates the SA-perceptive pathway in Arabidopsis. Plant J. 31: 87-95 (2002).

Genoud T, Trevino Santa Cruz MB, Metraux JP. Numeric simulation of plant signaling networks. Plant Physiol. 126: 1430-1437 (2001).

Genovesi V, Fornale S, Fry SC, Ruel K, Ferrer P, Encina A, Sonbol FM, Bosch J, Puigdomenech P, Rigau J, Caparros-Ruiz D. ZmXTH1, a new xyloglucan endotransglucosylase/hydrolase in maize, affects cell wall structure and composition in Arabidopsis thaliana. J. Exp. Bot. 59: 875-889 (2008).

George TS, Richardson AE, Hadobas PA, Simpson RJ. Characterization of transgenic Trifolium subterraneum L. which expresses phyA and releases extracellular phytase: growth and P nutrition in laboratory media and soil. Plant Cell Environ. 27: 1351-1361 (2004).

Gepstein S, Sabehi G, Carp MJ, Hajouj T, Nesher MF, Yariv I, Dor C, Bassani M. Large-scale identification of leaf senescence-associated genes. Plant J. 36: 629-642 (2003).

Gerbeau P, Amodeo G, Henzler T, Santoni V, Ripoche P, Maurel C. The water permeability of Arabidopsis plasma membrane is regulated by divalent cations and pH. Plant J. 30: 71-81 (2002).

Germain V, Rylott EL, Larson TR, Sherson SM, Bechtold N, Carde JP, Bryce JH, Graham IA, Smith SM. Requirement for 3-ketoacyl-CoA thiolase-2 in peroxisome development, fatty acid beta-oxidation and breakdown of triacylglycerol in lipid bodies of Arabidopsis seedlings. Plant J. 28: 1-12 (2001).

Germann S, Juul-Jensen T, Letarnec B, Gaudin V. DamID, a new tool for studying plant chromatin profiling in vivo, and its use to identify putative LHP1 target loci. Plant J. 48: 153-163 (2006).

Gershater M, Sharples K, Edwards R. Carboxylesterase activities toward pesticide esters in crops and weeds. Phytochemistry 67: 2561-2567 (2006).

Geuting V, Kobbe D, Hartung F, Dürr J, Focke M, Puchta H. Two distinct MUS81-EME1 complexes from Arabidopsis process Holliday junctions. Plant Physiol. 150: 1062-1071 (2009).

Ghandilyan A, Ilk N, Hanhart C, Mbengue M, Barboza L, Schat H, Koornneef M, El-Lithy M, Vreugdenhil D, Reymond M, Aarts MG. A strong effect of growth medium and organ type on the identification of QTLs for phytate and mineral concentrations in three Arabidopsis thaliana RIL populations. J. Exp. Bot. 60: 1409-1425 (2009).

Ghanevati M, Jaworski JG. Engineering and mechanistic studies of the Arabidopsis FAE1 beta-ketoacyl-CoA synthase, FAE1 KCS. Eur. J. Biochem. 269: 3531-3539 (2002).

Gharbi I, Ricard B, Rolin D, Maucourt M, Andrieu MH, Bizid E, Smiti S, Brouquisse R. Effect of hexokinase activity on tomato root metabolism during prolonged hypoxia. Plant Cell Environ. 30: 508-517 (2007).

Ghassemian M, Lutes J, Chang HS, Lange I, Chen W, Zhu T, Wang X, Lange BM. Abscisic acid-induced modulation of metabolic and redox control pathways in Arabidopsis thaliana. Phytochemistry 69: 2899-2911 (2008).

Ghassemian M, Nambara E, Cutler S, Kawaide H, Kamiya Y, McCourt P. Regulation of abscisic acid signaling by the ethylene response pathway in Arabidopsis. Plant Cell 12: 1117-1126 (2000).

Ghelis T, Bolbach G, Clodic G, Habricot Y, Miginiac E, Sotta B, Jeannette E. Protein tyrosine kinases and protein tyrosine phosphatases are involved in ABA-dependent processes in Arabidopsis thaliana seeds and suspension cells. Plant Physiol. 148: 1668-1680 (2008).

Ghislain M, Frankard V, Vandenbossche D, Matthews BF, Jacobs M. Molecular analysis of the aspartate kinase-homoserine dehydrogenase gene from Arabidopsis thaliana. Plant Mol. Biol. 24: 835-851 (1994).

Giacomelli L, Masi A, Ripoll DR, Lee MJ, van Wijk KJ. Arabidopsis thaliana deficient in two chloroplast ascorbate peroxidases shows accelerated light-induced necrosis when levels of cellular ascorbate are low. Plant Mol. Biol. 65: 627-644 (2007).

Giacomelli L, Rudella A, van Wijk KJ. High light response of the thylakoid proteome in Arabidopsis wild type and the ascorbate-deficient mutant vtc2-2. A comparative proteomics study. Plant Physiol. 141: 685-701 (2006).

Giakountis A, Coupland G. Phloem transport of flowering signals. Curr. Opin. Plant Biol. 11: 687-694 (2008).

Gibala M, Kicia M, Sakamoto W, Gola EM, Kubrakiewicz J, Smakowska E, Janska H. The lack of mitochondrial AtFtsH4 protease alters Arabidopsis leaf morphology at the late stage of rosette development under short day photoperiod. Plant J. 59: 685-699 (2009).

Gibeaut DM, Hulett J, Cramer GR, Seemann JR. Maximal biomass of Arabidopsis thaliana using a simple, low-maintenance hydroponic method and favorable environmental conditions. Plant Physiol. 115: 317-319 (1997).

Gibon Y, Blaesing OE, Hannemann J, Carillo P, Hohne M, Hendriks JH, Palacios N, Cross J, Selbig J, Stitt M. A robot-based platform to measure multiple enzyme activities in Arabidopsis using a set of cycling assays: comparison of changes of enzyme activities and transcript levels during diurnal cycles and in prolonged darkness. Plant Cell 16: 3304-3325 (2004).

Gibon Y, Pyl ET, Sulpice R, Lunn JE, Höhne M, Gunther M, Stitt M. Adjustment of growth, starch turnover, protein content and central metabolism to a decrease of the carbon supply when Arabidopsis is grown in very short photoperiods. Plant Cell Environ. 32: 859-874 (2009).

Gibon Y, Vigeolas H, Tiessen A, Geigenberger P, Stitt M. Sensitive and high throughput metabolite assays for inorganic pyrophosphate, ADPGlc, nucleotide phosphates, and glycolytic intermediates based on a novel enzymic cycling system. Plant J. 30: 221-235 (2002).

Gibson LC, Marrison JL, Leech RM, Jensen PE, Bassham DC, Gibson M, Hunter CN. A putative Mg chelatase subunit from Arabidopsis thaliana cv C24. Sequence and transcript analysis of the gene, import of the protein into chloroplasts, and in situ localization of the transcript and protein. Plant Physiol. 111: 61-71 (1996).

Gibson S, Arondel V, Iba K, Somerville C. Cloning of a temperature-regulated gene encoding a chloroplast omega-3 desaturase from Arabidopsis thaliana. Plant Physiol. 106: 1615-1621 (1994).

Gibson SI. Control of plant development and gene expression by sugar signaling. Curr. Opin. Plant Biol. 8: 93-102 (2005).

Gibson SI. Sugar and phytohormone response pathways: navigating a signalling network. J. Exp. Bot. 55: 253-264 (2004).

Gidoni D, Fuss E, Burbidge A, Speckmann GJ, James S, Nijkamp D, Mett A, Feiler J, Smoker M, de Vroomen MJ, Leader D, Liharska T, Groenendijk J, Coppoolse E, Smit JJ, Levin I, de Both M, Schuch W, Jones JD, Taylor IB, Theres K, van Haaren MJ. Multi-functional T-DNA/Ds tomato lines designed for gene cloning and molecular and physical dissection of the tomato genome. Plant Mol. Biol. 51: 83-98 (2003).

Giege P, Heazlewood JL, Roessner-Tunali U, Millar AH, Fernie AR, Leaver CJ, Sweetlove LJ. Enzymes of glycolysis are functionally associated with the mitochondrion in Arabidopsis cells. Plant Cell 15: 2140-2151 (2003).

Giege P, Sweetlove LJ, Cognat V, Leaver CJ. Coordination of nuclear and mitochondrial genome expression during mitochondrial biogenesis in Arabidopsis. Plant Cell 17: 1497-1512 (2005).

Giermann N, Schroder M, Ritter T, Zrenner R. Molecular analysis of de novo pyrimidine synthesis in solanaceous species. Plant Mol. Biol. 50: 393-403 (2002).

Gierth M, Maser P, Schroeder JI. The potassium transporter AtHAK5 functions in K(+) deprivation-induced high-affinity K(+) uptake and AKT1 K(+) channel contribution to K(+) uptake kinetics in Arabidopsis roots. Plant Physiol. 137: 1105-1114 (2005).

Gifford ML, Robertson FC, Soares DC, Ingram GC. ARABIDOPSIS CRINKLY4 function, internalization, and turnover are dependent on the extracellular crinkly repeat domain. Plant Cell 17: 1154-1166 (2005).

Giglione C, Serero A, Pierre M, Boisson B, Meinnel T. Identification of eukaryotic peptide deformylases reveals universality of N-terminal protein processing mechanisms. EMBO J. 19: 5916-5929 (2000).

Gigolashvili T, Berger B, Mock HP, Müller C, Weisshaar B, Flugge UI. The transcription factor HIG1/MYB51 regulates indolic glucosinolate biosynthesis in Arabidopsis thaliana. Plant J. 50: 886-901 (2007).

Gigolashvili T, Yatusevich R, Berger B, Muller C, Flugge UI. The R2R3-MYB transcription factor HAG1/MYB28 is a regulator of methionine-derived glucosinolate biosynthesis in Arabidopsis thaliana. Plant J. 51: 247-261 (2007).

Gigon A, Matos AR, Laffray D, Zuily-Fodil Y, Pham-Thi AT. Affect of drought stress on lipid metabolism in the leaves of Arabidopsis thaliana (ecotype Columbia). Ann. Bot. (Lond.) 94: 345-351 (2004).

Gil MJ, Coego A, Mauch-Mani B, Jorda L, Vera P. The Arabidopsis csb3 mutant reveals a regulatory link between salicylic acid-mediated disease resistance and the methyl-erythritol 4-phosphate pathway. Plant J. 44: 155-166 (2005).

Gil P, Liu Y, Orbovic V, Verkamp E, Poff KL, Green PJ. Characterization of the auxin-inducible SAUR-AC1 gene for use as a molecular genetic tool in Arabidopsis. Plant Physiol. 104: 777-784 (1994).

Gil-Mascarell R, Lopez-Coronado JM, Belles JM, Serrano R, Rodriguez PL. The Arabidopsis HAL2-like gene family includes a novel sodium-sensitive phosphatase. Plant J. 17: 373-383 (1999).

Giliberto L, Perrotta G, Pallara P, Weller JL, Fraser PD, Bramley PM, Fiore A, Tavazza M, Giuliano G. Manipulation of the blue light photoreceptor cryptochrome 2 in tomato affects vegetative development, flowering time, and fruit antioxidant content. Plant Physiol. 137: 199-208 (2005).

Gillespie J, Rogers SW, Deery M, Dupree P, Rogers JC. A unique family of proteins associated with internalized membranes in protein storage vacuoles of the Brassicaceae. Plant J. 41: 429-441 (2005).

Gilliland LU, Kandasamy MK, Pawloski LC, Meagher RB. Both vegetative and reproductive actin isovariants complement the stunted root hair phenotype of the Arabidopsis act2-1 mutation. Plant Physiol. 130: 2199-2209 (2002).

Gilliland LU, Magallanes-Lundback M, Hemming C, Supplee A, Koornneef M, Bentsink L, DellaPenna D. Genetic basis for natural variation in seed vitamin E levels in Arabidopsis thaliana. Proc. Natl. Acad. Sci. U.S.A. 103: 18834-18841 (2006).

Gilliland LU, Pawloski LC, Kandasamy MK, Meagher RB. Arabidopsis actin gene ACT7 plays an essential role in germination and root growth. Plant J. 33: 319-328 (2003).

Gillissen B, Burkle L, Andre B, Kuhn C, Rentsch D, Brandl B, Frommer WB. A new family of high-affinity transporters for adenine, cytosine, and purine derivatives in Arabidopsis. Plant Cell 12: 291-300 (2000).

Gillmor CS, Lukowitz W, Brininstool G, Sedbrook JC, Hamann T, Poindexter P, Somerville C. Glycosylphosphatidylinositol-anchored proteins are required for cell wall synthesis and morphogenesis in Arabidopsis. Plant Cell 17: 1128-1140 (2005).

Gillon AD, Saska I, Jennings CV, Guarino RF, Craik DJ, Anderson MA. Biosynthesis of circular proteins in plants. Plant J. 53: 505-515 (2008).

Gilmour SJ, Fowler SG, Thomashow MF. Arabidopsis transcriptional activators CBF1, CBF2, and CBF3 have matching functional activities. Plant Mol. Biol. 54: 767-781 (2004).

Gilmour SJ, Lin C, Thomashow MF. Purification and properties of Arabidopsis thaliana COR (cold-regulated) gene polypeptides COR15am and COR6.6 expressed in Escherichia coli. Plant Physiol. 111: 293-299 (1996).

Gilmour SJ, Sebolt AM, Salazar MP, Everard JD, Thomashow MF. Overexpression of the Arabidopsis CBF3 transcriptional activator mimics multiple biochemical changes associated with cold acclimation. Plant Physiol. 124: 1854-1865 (2000).

Gilmour SJ, Thomashow MF. Cold acclimation and cold-regulated gene expression in ABA mutants of Arabidopsis thaliana. Plant Mol. Biol. 17: 1233-1240 (1991).

Gilmour SJ, Zarka DG, Stockinger EJ, Salazar MP, Houghton JM, Thomashow MF. Low temperature regulation of the Arabidopsis CBF family of AP2 transcriptional activators as an early step in cold-induced COR gene expression. Plant J. 16: 433-442 (1998).

Gilson PR, Vergara CE, Kjer-Nielsen L, Teasdale RD, Bacic A, Gleeson PA. Identification of a Golgi-localised GRIP domain protein from Arabidopsis thaliana. Planta 219: 1050-1056 (2004).

Ginzberg I, Stein H, Kapulnik Y, Szabados L, Strizhov N, Schell J, Koncz C, Zilberstein A. Isolation and characterization of two different cDNAs of delta1-pyrroline-5-carboxylate synthase in alfalfa, transcriptionally induced upon salt stress. Plant Mol. Biol. 38: 755-764 (1998).

Giordano CV, Mori T, Sala OE, Scopel AL, Caldwell MM, Ballare CL. Functional acclimation to solar UV-B radiation in Gunnera magellanica, a native plant species of southernmost Patagonia. Plant Cell Environ. 26: 2027-2036 (2003).

Giovannoni J. Molecular biology of fruit maturation and ripening. Annu. Rev. Plant Physiol. Plant Mol. Biol. 52: 725-749 (2001).

Giraudat J. Abscisic acid signaling. Curr. Opin. Cell Biol. 7: 232-238 (1995).

Girin T, Lejay L, Wirth J, Widiez T, Palenchar PM, Nazoa P, Touraine B, Gojon A, Lepetit M. Identification of a 150 bp cis-acting element of the AtNRT2.1 promoter involved in the regulation of gene expression by the N and C status of the plant. Plant Cell Environ. 30: 1366-1380 (2007).

Girin T, Sorefan K, Ostergaard L. Meristematic sculpting in fruit development. J. Exp. Bot. 60: 1493-1502 (2009).

Girke T, Todd J, Ruuska S, White J, Benning C, Ohlrogge J. Microarray analysis of developing Arabidopsis seeds. Plant Physiol. 124: 1570-1581 (2000).

Girling RD, Madison R, Hassall M, Poppy GM, Turner JG. Investigations into plant biochemical wound-response pathways involved in the production of aphid-induced plant volatiles. J. Exp. Bot. 59: 3077-3085 (2008).

Giromini L, Paina A, Cerana R, Colombo R. Putrescine channels in the plasma membrane of Arabidopsis thaliana. Plant Physiol. 105: 921-926 (1994).

Gissot L, Polge C, Jossier M, Girin T, Bouly JP, Kreis M, Thomas M. AKINbetagamma contributes to SnRK1 heterotrimeric complexes and interacts with two proteins implicated in plant pathogen resistance through its KIS/GBD sequence. Plant Physiol. 142: 931-944 (2006).

Glaring MA, Zygadlo A, Thorneycroft D, Schulz A, Smith SM, Blennow A, Baunsgaard L. An extra-plastidial alpha-glucan, water dikinase from Arabidopsis phosphorylates amylopectin in vitro and is not necessary for transient starch degradation. J. Exp. Bot. 58: 3949-3960 (2007).

Glass AD, Britto DT, Kaiser BN, Kinghorn JR, Kronzucker HJ, Kumar A, Okamoto M, Rawat S, Siddiqi MY, Unkles SE, Vidmar JJ. The regulation of nitrate and ammonium transport systems in plants. J. Exp. Bot. 53: 855-864 (2002).

Glass ADM, Brito DT, Kaiser BN, Kronzucker HJ, Kumar A, Okamoto M, Rawat SR, Siddiqi MY, Silim SM, Vidmar JJ, Zhuo D. Nitrogen transport in plants, with an emphasis on the regulation of fluxes to match plant demand. J. Plant Nutr. Soil. Sci. 164: 199-207 (2001).

Glassbrook G, Beecher C, Ryals J. Metabolic profiling on the right path. Nat. Biotechnol. 18: 1142-1143 (2000).

Glassbrook N, Ryals J. A systematic approach to biochemical profiling. Curr. Opin. Plant Biol. 4: 186-190 (2001).

Glazebrook J. Genes controlling expression of defense responses in Arabidopsis--2001 status. Curr. Opin. Plant Biol. 4: 301-308 (2001).

Glazebrook J. Genes controlling expression of defense responses in Arabidopsis. Curr. Opin. Plant Biol. 2: 280-286 (1999).

Glazebrook J, Rogers EE, Ausubel FM. Use of Arabidopsis for genetic dissection of plant defense responses. Annu. Rev. Genet. 31: 547-569 (1997).

Glazov E, Phillips K, Budziszewski GJ, Meins F, Levin JZ. A gene encoding an RNase D exonuclease-like protein is required for post-transcriptional silencing in Arabidopsis. Plant J. 35: 342-349 (2003).

Glinski M, Weckwerth W. The role of mass spectrometry in plant systems biology. Mass Spectrom. Rev. 25: 173-214 (2006).

Glover BJ. Differentiation in plant epidermal cells. J. Exp. Bot. 51: 497-505 (2000).

Glynn JM, Yang Y, Vitha S, Schmitz AJ, Hemmes M, Miyagishima SY, Osteryoung KW. PARC6, a novel chloroplast division factor, influences FtsZ assembly and is required for recruitment of PDV1 during chloroplast division in Arabidopsis. Plant J. 59: 700-711 (2009).

Gnanasambandam A, Polkinghorne IG, Birch RG. Heterologous signals allow efficient targeting of a nuclear-encoded fusion protein to plastids and endoplasmic reticulum in diverse plant species. Plant Biotechnol. J. 5: 290-296 (2007).

Gobert A, Park G, Amtmann A, Sanders D, Maathuis FJ. Arabidopsis thaliana cyclic nucleotide gated channel 3 forms a non-selective ion transporter involved in germination and cation transport. J. Exp. Bot. 57: 791-800 (2006).

Gocal GF, Sheldon CC, Gubler F, Moritz T, Bagnall DJ, MacMillan CP, Li SF, Parish RW, Dennis ES, Weigel D, King RW. GAMYB-like genes, flowering, and gibberellin signaling in Arabidopsis. Plant Physiol. 127: 1682-1693 (2001).

Goda H, Sasaki E, Akiyama K, Maruyama-Nakashita A, Nakabayashi K, Li W, Ogawa M, Yamauchi Y, Preston J, Aoki K, Kiba T, Takatsuto S, Fujioka S, Asami T, Nakano T, Kato H, Mizuno T, Sakakibara H, Yamaguchi S, Nambara E, Kamiya Y, Takahashi H, et al. The AtGenExpress hormone- and chemical-treatment data set: experimental design, data evaluation, model data analysis, and data access. Plant J. 55: 526-542 (2008).

Goda H, Sawa S, Asami T, Fujioka S, Shimada Y, Yoshida S. Comprehensive comparison of auxin-regulated and brassinosteroid-regulated genes in Arabidopsis. Plant Physiol. 134: 1555-1573 (2004).

Goda H, Shimada Y, Asami T, Fujioka S, Yoshida S. Microarray analysis of brassinosteroid-regulated genes in Arabidopsis. Plant Physiol. 130: 1319-1334 (2002).

Godard KA, Byun-McKay A, Levasseur C, Plant A, Seguin A, Bohlmann J. Testing of a heterologous, wound- and insect-inducible promoter for functional genomics studies in conifer defense. Plant Cell Rep. 26: 2083-2090 (2007).

Godard KA, White R, Bohlmann J. Monoterpene-induced molecular responses in Arabidopsis thaliana. Phytochemistry 69: 1838-1849 (2008).

Goddijn O, Smeekens S. Sensing trehalose biosynthesis in plants. Plant J. 14: 143-146 (1998).

Goddijn OJM, van Dun K. Trehalose metabolism in plants. Trends Plant Sci. 4: 315-319 (1999).

Goderis IJ, De Bolle MF, Francois IE, Wouters PF, Broekaert WF, Cammue BP. A set of modular plant transformation vectors allowing flexible insertion of up to six expression units. Plant Mol. Biol. 50: 17-27 (2002).

Godge MR, Kumar D, Kumar PP. Arabidopsis HOG1 gene and its petunia homolog PETCBP act as key regulators of yield parameters. Plant Cell Rep. 27: 1497-1507 (2008).

Godiard L, Sauviac L, Torii KU, Grenon O, Mangin B, Grimsley NH, Marco Y. ERECTA, an LRR receptor-like kinase protein controlling development pleiotropically affects resistance to bacterial wilt. Plant J. 36: 353-365 (2003).

Goepfert S, Vidoudez C, Rezzonico E, Hiltunen JK, Poirier Y. Molecular identification and characterization of the Arabidopsis delta(3,5),delta(2,4)-dienoyl-coenzyme A isomerase, a peroxisomal enzyme participating in the {beta}-oxidation cycle of unsaturated fatty acids. Plant Physiol. 138: 1947-1956 (2005).

Goepfert S, Vidoudez C, Tellgren-Roth C, Delessert S, Hiltunen JK, Poirier Y. Peroxisomal Delta(3),Delta(2)-enoyl-CoA isomerases and evolution of cytosolic paralogues in embryophytes. Plant J. 56: 728-742 (2008).

Goeres DC, Van Norman JM, Zhang W, Fauver NA, Spencer ML, Sieburth LE. Components of the Arabidopsis mRNA decapping complex are required for early seedling development. Plant Cell 19: 1549-1564 (2007).

Goetz M, Vivian-Smith A, Johnson SD, Koltunow AM. AUXIN RESPONSE FACTOR8 is a negative regulator of fruit initiation in Arabidopsis. Plant Cell 18: 1873-1886 (2006).

Goggin DE, Lipscombe R, Fedorova E, Millar AH, Mann A, Atkins CA, Smith PM. Dual intracellular localization and targeting of aminoimidazole ribonucleotide synthetase in cowpea. Plant Physiol. 131: 1033-1041 (2003).

Goh CH, Nam HG, Park YS. Stress memory in plants: a negative regulation of stomatal response and transient induction of rd22 gene to light in abscisic acid-entrained Arabidopsis plants. Plant J. 36: 240-255 (2003).

Golan A, Tepper M, Soudry E, Horwitz BA, Gepstein S. Cytokinin, acting through ethylene, restores gravitropism to Arabidopsis seedlings grown under red light. Plant Physiol. 112: 901-904 (1996).

Golan T, Muller-Moule P, Niyogi KK. Photoprotection mutants of Arabidopsis thaliana acclimate to high light by increasing photosynthesis and specific antioxidants. Plant Cell Environ. 29: 879-887 (2006).

Golden TA, Schauer SE, Lang JD, Pien S, Mushegian AR, Grossniklaus U, Meinke DW, Ray A. SHORT INTEGUMENTS1/SUSPENSOR1/CARPEL FACTORY, a Dicer homolog, is a maternal effect gene required for embryo development in Arabidopsis. Plant Physiol. 130: 808-822 (2002).

Golisz A, Sugano M, Fujii Y. Microarray expression profiling of Arabidopsis thaliana L. in response to allelochemicals identified in buckwheat. J. Exp. Bot. 59: 3099-3109 (2008).

Golovkin M, Reddy AS. Expression of U1 small nuclear ribonucleoprotein 70K antisense transcript using APETALA3 promoter suppresses the development of sepals and petals. Plant Physiol. 132: 1884-1891 (2003).

Golovko A, Sitbon F, Tillberg E, Nicander B. Identification of a tRNA isopentenyltransferase gene from Arabidopsis thaliana. Plant Mol. Biol. 49: 161-169 (2002).

Gomarasca S, Vannini C, Venegoni A, Talarico A, Marre MT, Soave C. A mutant of Arabidopsis thaliana with a reduced response to fusicoccin. Plant Physiol. 103: 165-170 (1993).

Gomes E, Jakobsen MK, Axelsen KB, Geisler M, Palmgren MG. Chilling tolerance in Arabidopsis involves ALA1, a member of a new family of putative aminophospholipid translocases. Plant Cell 12: 2441-2454 (2000).

Gomez LD, Baud S, Gilday A, Li Y, Graham IA. Delayed embryo development in the ARABIDOPSIS TREHALOSE-6-PHOSPHATE SYNTHASE 1 mutant is associated with altered cell wall structure, decreased cell division and starch accumulation. Plant J. 46: 69-84 (2006).

Gomez MD, Beltran JP, Canas LA. The pea END1 promoter drives anther-specific gene expression in different plant species. Planta 219: 967-981 (2004).

Gomez-Lim MA, Valdes-Lopez V, Cruz-Hernandez A, Saucedo-Arias LJ. Isolation and characterization of a gene involved in ethylene biosynthesis from Arabidopsis thaliana. Gene 134: 217-221 (1993).

Gomez-Maldonado J, Avila C, Barnestein P, Crespillo R, Canovas FM. Interaction of cis-acting elements in the expression of a gene encoding cytosolic glutamine synthetase in pine seedlings. Physiol. Plant. 121: 537-545 (2004).

Gomez-Maldonado J, Avila C, Torre F, Canas R, Canovas FM, Campbell MM. Functional interactions between a glutamine synthetase promoter and MYB proteins. Plant J. 39: 513-526 (2004).

Gomez-Mena C, Sablowski R. Arabidopsis thaliana HOMEOBOX GENE1 establishes the basal boundaries of shoot organs and controls stem growth. Plant Cell 20: 2059-2072 (2008).

Gomez-Porras JL, Riano-Pachon DM, Dreyer I, Mayer JE, Mueller-Roeber B. Genome-wide analysis of ABA-responsive elements ABRE and CE3 reveals divergent patterns in Arabidopsis and rice. BMC Genomics 8: 260 (2007).

Gomi K, Ogawa D, Katou S, Kamada H, Nakajima N, Saji H, Soyano T, Sasabe M, Machida Y, Mitsuhara I, Ohashi Y, Seo S. A mitogen-activated protein kinase NtMPK4 activated by SIPKK is required for jasmonic acid signaling and involved in ozone tolerance via stomatal movement in tobacco. Plant Cell Physiol. 46: 1902-1914 (2005).

Gong D, Gong Z, Guo Y, Zhu JK. Expression, activation, and biochemical properties of a novel Arabidopsis protein kinase. Plant Physiol. 129: 225-234 (2002).

Gong D, Guo Y, Jagendorf AT, Zhu JK. Biochemical characterization of the Arabidopsis protein kinase SOS2 that functions in salt tolerance. Plant Physiol. 130: 256-264 (2002).

Gong D, Guo Y, Schumaker KS, Zhu JK. The SOS3 family of calcium sensors and SOS2 family of protein kinases in Arabidopsis. Plant Physiol. 134: 919-926 (2004).

Gong H, Jiao Y, Hu WW, Pua EC. Expression of glutathione-S-transferase and its role in plant growth and development in vivo and shoot morphogenesis in vitro. Plant Mol. Biol. 57: 53-66 (2005).

Gong M, Chen SN, Song YQ, Li ZG. Effect of calcium and calmodulin on intrinsic heat tolerance in relation to antioxidant systems in maize seedlings. Aust. J. Plant Physiol. 24: 371-379 (1997).

Gong Q, Li P, Ma S, Indu Rupassara S, Bohnert HJ. Salinity stress adaptation competence in the extremophile Thellungiella halophila in comparison with its relative Arabidopsis thaliana. Plant J. 44: 826-839 (2005).

Gong W, Shen YP, Ma LG, Pan Y, Du YL, Wang DH, Yang JY, Hu LD, Liu XF, Dong CX, Ma L, Chen YH, Yang XY, Gao Y, Zhu D, Tan X, Mu JY, Zhang DB, Liu YL, Dinesh-Kumar SP, Li Y, Wang XP, Gu HY, Qu LJ, Bai SN, Lu YT, Li JY, Zhao JD, Zuo J, Huang H, et al. Genome-wide ORFeome cloning and analysis of Arabidopsis transcription factor genes. Plant Physiol. 135: 773-782 (2004).

Gong X, Bewley DJ. A GAMYB-like gene in tomato and its expression during seed germination. Planta 228: 563-572 (2008).

Gong Z, Dong CH, Lee H, Zhu J, Xiong L, Gong D, Stevenson B, Zhu JK. A DEAD box RNA helicase is essential for mRNA export and important for development and stress responses in Arabidopsis. Plant Cell 17: 256-267 (2005).

Gong Z, Koiwa H, Cushman MA, Ray A, Bufford D, Kore-eda S, Matsumoto TK, Zhu J, Cushman JC, Bressan RA, Hasegawa PM. Genes that are uniquely stress regulated in salt overly sensitive (sos) mutants. Plant Physiol. 126: 363-375 (2001).

Gonzalez A, Zhao M, Leavitt JM, Lloyd AM. Regulation of the anthocyanin biosynthetic pathway by the TTG1/bHLH/Myb transcriptional complex in Arabidopsis seedlings. Plant J. 53: 814-827 (2008).

Gonzalez DH, Welchen E, Attallah CV, Comelli RN, Mufarrege EF. Transcriptional coordination of the biogenesis of the oxidative phosphorylation machinery in plants. Plant J. 51: 105-116 (2007).

Gonzalez E, Danehower D, Daub ME. Vitamer levels, stress response, enzyme activity and gene regulation of Arabidopsis lines mutant in the pyridoxine/pyridoxamine 5'-phosphate oxidase (PDX3) and the pyridoxal kinase (SOS4) genes involved in the vitamin B6 salvage pathway. Plant Physiol. 145: 985-996 (2007).

Gonzalez E, Solano R, Rubio V, Leyva A, Paz-Ares J. PHOSPHATE TRANSPORTER TRAFFIC FACILITATOR1 is a plant-specific SEC12-related protein that enables the endoplasmic reticulum exit of a high-affinity phosphate transporter in Arabidopsis. Plant Cell 17: 3500-3512 (2005).

Gonzalez N, Beemster GT, Inze D. David and Goliath: what can the tiny weed Arabidopsis teach us to improve biomass production in crops? Curr. Opin. Plant Biol. 12: 157-164 (2009).

Gonzalez-Bayon R, Kinsman EA, Quesada V, Vera A, Robles P, Ponce MR, Pyke KA, Micol JL. Mutations in the RETICULATA gene dramatically alter internal architecture but have little effect on overall organ shape in Arabidopsis leaves. J. Exp. Bot. 57: 3019-3031 (2006).

Gonzalez-Carranza ZH, Elliott KA, Roberts JA. Expression of polygalacturonases and evidence to support their role during cell separation processes in Arabidopsis thaliana. J. Exp. Bot. 58: 3719-3730 (2007).

Gonzalez-Carranza ZH, Rompa U, Peters JL, Bhatt AM, Wagstaff C, Stead AD, Roberts JA. Hawaiian skirt: an F-box gene that regulates organ fusion and growth in Arabidopsis. Plant Physiol. 144: 1370-1382 (2007).

Gonzalez-Carranza ZH, Whitelaw CA, Swarup R, Roberts JA. Temporal and spatial expression of a polygalacturonase during leaf and flower abscission in oilseed rape and Arabidopsis. Plant Physiol. 128: 534-543 (2002).

Gonzalez-Garcia MP, Rodriguez D, Nicolas C, Rodriguez PL, Nicolas G, Lorenzo O. Negative regulation of abscisic acid signaling by the Fagus sylvatica FsPP2C1 plays a role in seed dormancy regulation and promotion of seed germination. Plant Physiol. 133: 135-144 (2003).

Gonzalez-Guzman M, Abia D, Salinas J, Serrano R, Rodriguez PL. Two new alleles of the abscisic aldehyde oxidase 3 gene reveal its role in abscisic acid biosynthesis in seeds. Plant Physiol. 135: 325-333 (2004).

Gonzalez-Lamothe R, Tsitsigiannis DI, Ludwig AA, Panicot M, Shirasu K, Jones JD. The U-box protein CMPG1 is required for efficient activation of defense mechanisms triggered by multiple resistance genes in tobacco and tomato. Plant Cell 18: 1067-1083 (2006).

Gonzali S, Novi G, Loreti E, Paolicchi F, Poggi A, Alpi A, Perata P. A turanose-insensitive mutant suggests a role for WOX5 in auxin homeostasis in Arabidopsis thaliana. Plant J. 44: 633-645 (2005).

Goo JH, Park AR, Park WJ, Park OK. Selection of Arabidopsis genes encoding secreted and plasma membrane proteins. Plant Mol. Biol. 41: 415-423 (1999).

Goodman HM, Ecker JR, Dean C. The genome of Arabidopsis thaliana. Proc. Natl. Acad. Sci. U.S.A. 92: 10831-10835 (1995).

Goosey L, Palecanda L, Sharrock RA. Differential patterns of expression of the Arabidopsis PHYB, PHYD, and PHYE phytochrome genes. Plant Physiol. 115: 959-969 (1997).

Goossens A, Dillen W, De Clercq J, Van Montagu M, Angenon G. The arcelin-5 gene of Phaseolus vulgaris directs high seed-specific expression in transgenic Phaseolus acutifolius and Arabidopsis plants. Plant Physiol. 120: 1095-1104 (1999).

Gorantla M, Babu PR, Lachagari VB, Reddy AM, Wusirika R, Bennetzen JL, Reddy AR. Identification of stress-responsive genes in an indica rice (Oryza sativa L.) using ESTs generated from drought-stressed seedlings. J. Exp. Bot. 58: 253-265 (2007).

Goslings D, Meskauskiene R, Kim C, Lee KP, Nater M, Apel K. Concurrent interactions of heme and FLU with Glu tRNA reductase (HEMA1), the target of metabolic feedback inhibition of tetrapyrrole biosynthesis, in dark- and light-grown Arabidopsis plants. Plant J. 40: 957-967 (2004).

Gosti F, Beaudoin N, Serizet C, Webb AA, Vartanian N, Giraudat J. ABI1 protein phosphatase 2C is a negative regulator of abscisic acid signaling. Plant Cell 11: 1897-1910 (1999).

Gosti F, Bertauche N, Vartanian N, Giraudat J. Abscisic acid-dependent and -independent regulation of gene expression by progressive drought in Arabidopsis thaliana. Mol. Gen. Genet. 246: 10-18 (1995).

Goto DB, Ogi M, Kijima F, Kumagai T, Werven FV, Onouchi H, Naito S. A single-nucleotide mutation in a gene encoding S-adenosylmethionine synthetase is associated with methionine over-accumulation phenotype in Arabidopsis thaliana. Genes Genet. Syst. 77: 89-95 (2002).

Goubet F, Misrahi A, Park SK, Zhang Z, Twell D, Dupree P. AtCSLA7, a cellulose synthase-like putative glycosyltransferase, is important for pollen tube growth and embryogenesis in Arabidopsis. Plant Physiol. 131: 547-557 (2003).

Gouget A, Senchou V, Govers F, Sanson A, Barre A, Rouge P, Pont-Lezica R, Canut H. Lectin receptor kinases participate in protein-protein interactions to mediate plasma membrane-cell wall adhesions in Arabidopsis. Plant Physiol. 140: 81-90 (2006).

Goujon T, Ferret V, Mila I, Pollet B, Ruel K, Burlat V, Joseleau JP, Barriere Y, Lapierre C, Jouanin L. Down-regulation of the AtCCR1 gene in Arabidopsis thaliana: effects on phenotype, lignins and cell wall degradability. Planta 217: 218-228 (2003).

Goujon T, Minic Z, El Amrani A, Lerouxel O, Aletti E, Lapierre C, Joseleau JP, Jouanin L. AtBXL1, a novel higher plant (Arabidopsis thaliana) putative beta-xylosidase gene, is involved in secondary cell wall metabolism and plant development. Plant J. 33: 677-690 (2003).

Goujon T, Sibout R, Pollet B, Maba B, Nussaume L, Bechtold N, Lu F, Ralph J, Mila I, Barriere Y, Lapierre C, Jouanin L. A new Arabidopsis thaliana mutant deficient in the expression of O-methyltransferase impacts lignins and sinapoyl esters. Plant Mol. Biol. 51: 973-989 (2003).

Goulas E, Schubert M, Kieselbach T, Kleczkowski LA, Gardestrom P, Schroder W, Hurry V. The chloroplast lumen and stromal proteomes of Arabidopsis thaliana show differential sensitivity to short- and long-term exposure to low temperature. Plant J. 47: 720-734 (2006).

Gould PD, Locke JC, Larue C, Southern MM, Davis SJ, Hanano S, Moyle R, Milich R, Putterill J, Millar AJ, Hall A. The molecular basis of temperature compensation in the Arabidopsis circadian clock. Plant Cell 18: 1177-1187 (2006).

Gousset-Dupont A, Lebouteiller B, Monreal J, Echevarria C, Pierre JN, Hodges M, Vidal J. Metabolite and post-translational control of phosphoenolpyruvate carboxylase from leaves and mesophyll cell protoplasts of Arabidopsis thaliana. Plant Sci. 169: 1096-1101 (2005).

Goverse A, de Engler JA, Verhees J, van der Krol S, Helder JH, Gheysen G. Cell cycle activation by plant parasitic nematodes. Plant Mol. Biol. 43: 747-761 (2000).

Goyer A, Collakova E, Diaz de la Garza R, Quinlivan EP, Williamson J, Gregory JF 3rd, Shachar-Hill Y, Hanson AD. 5-Formyltetrahydrofolate is an inhibitory but well tolerated metabolite in Arabidopsis leaves. J. Biol. Chem. 280: 26137-26142 (2005).

Goyer A, Collakova E, Shachar-Hill Y, Hanson AD. Functional characterization of a methionine gamma-lyase in Arabidopsis and its implication in an alternative to the reverse trans-sulfuration pathway. Plant Cell Physiol. 48: 232-242 (2007).

Goyer A, Haslekas C, Miginiac-Maslow M, Klein U, Le Marechal P, Jacquot JP, Decottignies P. Isolation and characterization of a thioredoxin-dependent peroxidase from Chlamydomonas reinhardtii. Eur. J. Biochem. 269: 272-282 (2002).

Goyer A, Illarionova V, Roje S, Fischer M, Bacher A, Hanson AD. Folate biosynthesis in higher plants. cDNA cloning, heterologous expression, and characterization of dihydroneopterin aldolases. Plant Physiol. 135: 103-111 (2004).

Goyer A, Johnson TL, Olsen LJ, Collakova E, Shachar-Hill Y, Rhodes D, Hanson AD. Characterization and metabolic function of a peroxisomal sarcosine and pipecolate oxidase from Arabidopsis. J. Biol. Chem. 279: 16947-16953 (2004).

Gradogna A, Scholz-Starke J, Gutla PV, Carpaneto A. Fluorescence combined with excised patch: measuring calcium currents in plant cation channels. Plant J. Dec 4 [Epub ahead of print] (2008).

Graham IA. Seed storage oil mobilization. Annu. Rev. Plant Biol. 59: 115-142 (2008).

Graham IA, Eastmond PJ. Pathways of straight and branched chain fatty acid catabolism in higher plants. Prog. Lipid Res. 41: 156-181 (2002).

Graham MA, Silverstein KA, Cannon SB, VandenBosch KA. Computational identification and characterization of novel genes from legumes. Plant Physiol. 135: 1179-1197 (2004).

Grallath S, Weimar T, Meyer A, Gumy C, Suter-Grotemeyer M, Neuhaus JM, Rentsch D. The AtProT family. Compatible solute transporters with similar substrate specificity but differential expression patterns. Plant Physiol. 137: 117-126 (2005).

Grandjean O, Vernoux T, Laufs P, Belcram K, Mizukami Y, Traas J. In vivo analysis of cell division, cell growth, and differentiation at the shoot apical meristem in Arabidopsis. Plant Cell 16: 74-87 (2004).

Granger CL, Cyr RJ. Characterization of the yeast copper-inducible promoter system in Arabidopsis thaliana. Plant Cell Rep. 20: 227-234 (2001).

Granier C, Massonnet C, Turc O, Muller B, Chenu K, Tardieu F. Individual leaf development in Arabidopsis thaliana: a stable thermal-time-based programme. Ann. Bot. (Lond.) 89: 595-604 (2002).

Granot D, Dai N. The 5' untranslated region of Arabidopsis thaliana calmodulin cDNA is an independent cDNA containing an open reading frame. Planta 198: 162-163 (1996).

Grant JJ, Yun BW, Loake GJ. Oxidative burst and cognate redox signalling reported by luciferase imaging: identification of a signal network that functions independently of ethylene, SA and Me-JA but is dependent on MAPKK activity. Plant J. 24: 569-582 (2000).

Grant M, Brown I, Adams S, Knight M, Ainslie A, Mansfield J. The RPM1 plant disease resistance gene facilitates a rapid and sustained increase in cytosolic calcium that is necessary for the oxidative burst and hypersensitive cell death. Plant J. 23: 441-450 (2000).

Grantz AA, Muller-Dieckmann HJ, Kim SH. Subcloning, crystallization and preliminary X-ray analysis of the signal receiver domain of ETR1, an ethylene receptor from Arabidopsis thaliana. Acta Crystallogr. D. Biol. Crystallogr. 54: 690-692 (1998).

Graser G, Oldham NJ, Brown PD, Temp U, Temp U, Gershenzon J. The biosynthesis of benzoic acid glucosinolate esters in Arabidopsis thaliana. Phytochemistry 57: 23-32 (2001).

Grata E, Boccard J, Glauser G, Carrupt PA, Farmer EE, Wolfender JL, Rudaz S. Development of a two-step screening ESI-TOF-MS method for rapid determination of significant stress-induced metabolome modifications in plant leaf extracts: the wound response in Arabidopsis thaliana as a case study. J. Sep. Sci. 30: 2268-2278 (2007).

Gravot A, Lieutaud A, Verret F, Auroy P, Vavasseur A, Richaud P. AtHMA3, a plant P1B-ATPase, functions as a Cd/Pb transporter in yeast. FEBS Lett. 561: 22-28 (2004).

Gray GR, Heath D. A global reorganization of the metabolome in Arabidopsis during cold acclimation is revealed by metabolic fingerprinting. Physiol. Plant. 124: 236-248 (2005).

Gray J. Guard cells: transcription factors regulate stomatal movements. Curr. Biol. 15: R593-R595 (2005).

Gray WM, Hellmann H, Dharmasiri S, Estelle M. Role of the Arabidopsis RING-H2 protein RBX1 in RUB modification and SCF function. Plant Cell 14: 2137-2144 (2002).

Gray WM, Muskett PR, Chuang HW, Parker JE. Arabidopsis SGT1b is required for SCF(TIR1)-mediated auxin response. Plant Cell 15: 1310-1319 (2003).

Gray-Mitsumune M, Matton DP. The Egg apparatus 1 gene from maize is a member of a large gene family found in both monocots and dicots. Planta 223: 618-625 (2006).

Gray-Mitsumune M, Mellerowicz EJ, Abe H, Schrader J, Winzell A, Sterky F, Blomqvist K, McQueen-Mason S, Teeri TT, Sundberg B. Expansins abundant in secondary xylem belong to subgroup a of the {alpha}-expansin gene family. Plant Physiol. 135: 1552-1564 (2004).

Greb T, Schmitz G, Theres K. Isolation and characterization of the Spindly homologue from tomato. J. Exp. Bot. 53: 1829-1830 (2002).

Grebenok RJ, Galbraith DW, Penna DD. Characterization of Zea mays endosperm C-24 sterol methyltransferase: one of two types of sterol methyltransferase in higher plants. Plant Mol. Biol. 34: 891-896 (1997).

Grebenok RJ, Ohnmeiss TE, Yamamoto A, Huntley ED, Galbraith DW, Della Penna D. Isolation and characterization of an Arabidopsis thaliana C-8,7 sterol isomerase: functional and structural similarities to mammalian C-8,7 sterol isomerase/emopamil-binding protein. Plant Mol. Biol. 38: 807-815 (1998).

Green KA, Prigge MJ, Katzman RB, Clark SE. CORONA, a member of the class III homeodomain leucine zipper gene family in Arabidopsis, regulates stem cell specification and organogenesis. Plant Cell 17: 691-704 (2005).

Green LS, Rogers EE. FRD3 controls iron localization in Arabidopsis. Plant Physiol. 136: 2523-2531 (2004).

Green RM, Tingay S, Wang ZY, Tobin EM. Circadian rhythms confer a higher level of fitness to Arabidopsis plants. Plant Physiol. 129: 576-584 (2002).

Greenboim-Wainberg Y, Maymon I, Borochov R, Alvarez J, Olszewski N, Ori N, Eshed Y, Weiss D. Cross talk between gibberellin and cytokinin: the Arabidopsis GA response inhibitor SPINDLY plays a positive role in cytokinin signaling. Plant Cell 17: 92-102 (2005).

Grefen C, Harter K. Plant two-component systems: principles, functions, complexity and cross talk. Planta 219: 733-742 (2004).

Gregis V, Sessa A, Colombo L, Kater MM. AGAMOUS-LIKE24 and SHORT VEGETATIVE PHASE determine floral meristem identity in Arabidopsis. Plant J. 56: 891-902 (2008).

Gregis V, Sessa A, Colombo L, Kater MM. AGL24, SHORT VEGETATIVE PHASE, and APETALA1 redundantly control AGAMOUS during early stages of flower development in Arabidopsis. Plant Cell 18: 1373-1382 (2006).

Grennan AK. Variations on a theme. Regulation of flowering time in Arabidopsis. Plant Physiol. 140: 399-400 (2006).

Grennan AK. An analysis of the Arabidopsis pollen transcriptome. Plant Physiol. 145: 3-4 (2007).

Grienenberger E, Besseau S, Geoffroy P, Debayle D, Heintz D, Lapierre C, Pollet B, Heitz T, Legrand M. A BAHD acyltransferase is expressed in tapetum of Arabidopsis anthers and is involved in the synthesis of hydroxycinnamoyl spermidines. Plant J. 58: 246-259 (2009).

Grierson CS, Roberts K, Feldmann KA, Dolan L. The COW1 locus of Arabidopsis acts after RHD2, and in parallel with RHD3 and TIP1, to determine the shape, rate of elongation, and number of root hairs produced from each site of hair formation. Plant Physiol. 115: 981-990 (1997).

Griesen D, Su D, Berczi A, Asard H. Localization of an ascorbate-reducible cytochrome b561 in the plant tonoplast. Plant Physiol. 134: 726-734 (2004).

Griffith M, Timonin M, Wong AC, Gray GR, Akhter SR, Saldanha M, Rogers MA, Weretilnyk EA, Moffatt B. Thellungiella: an Arabidopsis-related model plant adapted to cold temperatures. Plant Cell Environ. 30: 529-538 (2007).

Griffith ME, Mayer U, Capron A, Ngo QA, Surendrarao A, McClinton R, Jurgens G, Sundaresan V. The TORMOZ gene encodes a nucleolar protein required for regulated division planes and embryo development in Arabidopsis. Plant Cell 19: 2246-2263 (2007).

Griffiths S, Dunford RP, Coupland G, Laurie DA. The evolution of CONSTANS-like gene families in barley, rice, and Arabidopsis. Plant Physiol. 131: 1855-1867 (2003).

Gronlund JT, Stemmer C, Lichota J, Merkle T, Grasser KD. Functionality of the beta/six site-specific recombination system in tobacco and Arabidopsis: a novel tool for genetic engineering of plant genomes. Plant Mol. Biol. 63: 545-556 (2007).

Groover AT. What genes make a tree a tree? Trends Plant Sci. 10: 210-214 (2005).

Groover AT, Fontana JR, Arroyo JM, Yordan C, McCombie WR, Martienssen RA. Secretion trap tagging of secreted and membrane-spanning proteins using Arabidopsis gene traps. Plant Physiol. 132: 698-708 (2003).

Groover AT, Mansfield SD, Difazio SP, Dupper G, Fontana JR, Millar R, Wang Y. The Populus homeobox gene ARBORKNOX1 reveals overlapping mechanisms regulating the shoot apical meristem and the vascular cambium. Plant Mol. Biol. 61: 917-932 (2006).

Groover AT, Pattishall A, Jones AM. IAA8 expression during vascular cell differentiation. Plant Mol. Biol. 51: 427-435 (2003).

Gross J, Cho WK, Lezhneva L, Falk J, Krupinska K, Shinozaki K, Seki M, Herrmann RG, Meurer J. A plant locus essential for phylloquinone (vitamin K1) biosynthesis originated from a fusion of four eubacterial genes. J. Biol. Chem. 281: 17189-17196 (2006).

Groszmann M, Paicu T, Smyth DR. Functional domains of SPATULA, a bHLH transcription factor involved in carpel and fruit development in Arabidopsis. Plant J. 55: 40-52 (2008).

Grotz N, Guerinot ML. Limiting nutrients: an old problem with new solutions? Curr. Opin. Plant Biol. 5: 158-163 (2002).

Grsic-Rausch S, Kobelt P, Siemens JM, Bischoff M, Ludwig-Muller J. Expression and localization of nitrilase during symptom development of the clubroot disease in Arabidopsis. Plant Physiol. 122: 369-378 (2000).

Grubb CD, Abel S. Glucosinolate metabolism and its control. Trends Plant Sci. 11: 89-100 (2006).

Grubb CD, Gross HB, Chen DL, Abel S. Identification of Arabidopsis mutants with altered glucosinolate profiles based on isothiocyanate bioactivity. Plant Sci. 162: 143-152 (2002).

Grube RC, Brennan EB, Ryder EJ. Characterization and genetic analysis of a lettuce (Lactuca sativa L.) mutant, weary, that exhibits reduced gravitropic response in hypocotyls and inflorescence stems. J. Exp. Bot. 54: 1259-1268 (2003).

Gruber MY, Wang S, Ethier S, Holowachuk J, Bonham-Smith PC, Soroka J, Lloyd A. "HAIRY CANOLA" - Arabidopsis GL3 induces a dense covering of trichomes on Brassica napus seedlings. Plant Mol. Biol. 60: 679-698 (2006).

Gruis D, Schulze J, Jung R. Storage protein accumulation in the absence of the vacuolar processing enzyme family of cysteine proteases. Plant Cell 16: 270-290 (2004).

Gruis DF, Selinger DA, Curran JM, Jung R. Redundant proteolytic mechanisms process seed storage proteins in the absence of seed-type members of the vacuolar processing enzyme family of cysteine proteases. Plant Cell 14: 2863-2882 (2002).

Grula JW, Hudspeth RL, Hobbs SL, Anderson DM. Organization, inheritance and expression of acetohydroxyacid synthase genes in the cotton allotetraploid Gossypium hirsutum. Plant Mol. Biol. 28: 837-846 (1995).

Grun S, Lindermayr C, Sell S, Durner J. Nitric oxide and gene regulation in plants. J. Exp. Bot. 57: 507-516 (2006).

Grzam A, Martin MN, Hell R, Meyer AJ. gamma-Glutamyl transpeptidase GGT4 initiates vacuolar degradation of glutathione S-conjugates in Arabidopsis. FEBS Lett. 581: 3131-3138 (2007).

Gu X, Bar-Peled M. The biosynthesis of UDP-galacturonic acid in plants. Functional cloning and characterization of Arabidopsis UDP-D-glucuronic acid 4-epimerase. Plant Physiol. 136: 4256-4264 (2004).

Gu X, Jiang D, Wang Y, Bachmair A, He Y. Repression of the floral transition via histone H2B monoubiquitination. Plant J. 57: 522-533 (2009).

Gu Y, Li S, Lord EM, Yang Z. Members of a novel class of Arabidopsis Rho guanine nucleotide exchange factors control Rho GTPase-dependent polar growth. Plant Cell 18: 366-381 (2006).

Gu Y, Vernoud V, Fu Y, Yang Z. ROP GTPase regulation of pollen tube growth through the dynamics of tip-localized F-actin. J. Exp. Bot. 54: 93-101 (2003).

Gu ZM, Wang HF, Huang J, Zhang HS. Cloning and characterization of a novel rice gene family encoding putative dual-specificity protein kinases, involved in plant responses to abiotic and biotic stresses. Plant Sci. 169: 470-477 (2005).

Guan C, Rosen ES, Boonsirichai K, Poff KL, Masson PH. The ARG1-LIKE2 gene of Arabidopsis functions in a gravity signal transduction pathway that is genetically distinct from the PGM pathway. Plant Physiol. 133: 100-112 (2003).

Guan XY, Li QJ, Shan CM, Wang S, Mao YB, Wang LJ, Chen XY. The HD-Zip IV gene GaHOX1 from cotton is a functional homologue of the Arabidopsis GLABRA2. Physiol. Plant. 134: 174-182 (2008).

Guan Y, Nothnagel EA. Binding of arabinogalactan proteins by yariv phenylglycoside triggers wound-like responses in Arabidopsis cell cultures. Plant Physiol. 135: 1346-1366 (2004).

Guan Y, Rawsthorne S, Scofield G, Shaw P, Doonan J. Cloning and characterization of a dihydrolipoamide acetyltransferase (E2) subunit of the pyruvate dehydrogenase complex from Arabidopsis thaliana. J. Biol. Chem. 270: 5412-5417 (1995).

Gudesblat GE, Torres PS, Vojnov AA. Xanthomonas campestris overcomes Arabidopsis stomatal innate immunity through a DSF cell-cell signal-regulated virulence factor. Plant Physiol. 149: 1017-1027 (2009).

Guerineau F, Benjdia M, Zhou DX. A jasmonate-responsive element within the A. thaliana vsp1 promoter. J. Exp. Bot. 54: 1153-1162 (2003).

Guerineau F, Sorensen AM, Fenby N, Scott RJ. Temperature sensitive diphtheria toxin confers conditional male-sterility in Arabidopsis thaliana. Plant Biotechnology Journal 1: 33-42 (2003).

Guerinot ML, Eide D. Zeroing in on zinc uptake in yeast and plants. Curr. Opin. Plant Biol. 2: 244-249 (1999).

Guermonprez H, Smertenko A, Crosnier MT, Durandet M, Vrielynck N, Guerche P, Hussey PJ, Satiat-Jeunemaitre B, Bonhomme S. The POK/AtVPS52 protein localizes to several distinct post-Golgi compartments in sporophytic and gametophytic cells. J. Exp. Bot. 59: 3087-3098 (2008).

Guevara-Garcia A, San Roman C, Arroyo A, Cortes ME, de la Luz Gutierrez-Nava M, Leon P. Characterization of the Arabidopsis clb6 mutant illustrates the importance of posttranscriptional regulation of the methyl-D-erythritol 4-phosphate pathway. Plant Cell 17: 628-643 (2005).

Guimaraes RL, Stotz HU. Oxalate production by Sclerotinia sclerotiorum deregulates guard cells during infection. Plant Physiol. 136: 3703-3711 (2004).

Guimil S, Dunand C. Cell growth and differentiation in Arabidopsis epidermal cells. J. Exp. Bot. 58: 3829-3840 (2007).

Guimil S, Dunand C. Patterning of Arabidopsis epidermal cells: epigenetic factors regulate the complex epidermal cell fate pathway. Trends Plant Sci. 11: 601-609 (2006).

Guo D, Gao X, Li H, Zhang T, Chen G, Huang P, An L, Li N. EGY1 plays a role in regulation of endodermal plastid size and number that are involved in ethylene-dependent gravitropism of light-grown Arabidopsis hypocotyls. Plant Mol. Biol. 66: 345-360 (2008).

Guo FQ, Crawford NM. Arabidopsis nitric oxide synthase1 is targeted to mitochondria and protects against oxidative damage and dark-induced senescence. Plant Cell 17: 3436-3450 (2005).

Guo FQ, Okamoto M, Crawford NM. Identification of a plant nitric oxide synthase gene involved in hormonal signaling. Science 302: 100-103 (2003).

Guo FQ, Wang R, Chen M, Crawford NM. The Arabidopsis dual-affinity nitrate transporter gene AtNRT1.1 (CHL1) is activated and functions in nascent organ development during vegetative and reproductive growth. Plant Cell 13: 1761-1777 (2001).

Guo FQ, Wang R, Crawford NM. The Arabidopsis dual-affinity nitrate transporter gene AtNRT1.1 (CHL1) is regulated by auxin in both shoots and roots. J. Exp. Bot. 53: 835-844 (2002).

Guo FQ, Young J, Crawford NM. The nitrate transporter AtNRT1.1 (CHL1) functions in stomatal opening and contributes to drought susceptibility in Arabidopsis. Plant Cell 15: 107-117 (2003).

Guo H, Ecker JR. The ethylene signaling pathway: new insights. Curr. Opin. Plant Biol. 7: 40-49 (2004).

Guo H, Mockler T, Duong H, Lin C. SUB1, an Arabidopsis Ca2+-binding protein involved in cryptochrome and phytochrome coaction. Science 291: 487-490 (2001).

Guo HS, Fei JF, Xie Q, Chua NH. A chemical-regulated inducible RNAi system in plants. Plant J. 34: 383-392 (2003).

Guo HS, Xie Q, Fei JF, Chua NH. MicroRNA directs mRNA cleavage of the transcription factor NAC1 to downregulate auxin signals for Arabidopsis lateral root development. Plant Cell 17: 1376-1386 (2005).

Guo J, Song J, Wang F, Zhang XS. Genome-wide identification and expression analysis of rice cell cycle genes. Plant Mol. Biol. 64: 349-360 (2007).

Guo J, Zhang Z, Bi Y, Yang W, Xu Y, Zhang L. Decreased stability of photosystem I in dgd1 mutant of Arabidopsis thaliana. FEBS Lett. 579: 3619-3624 (2005).

Guo KM, Babourina O, Christopher DA, Borsics T, Rengel Z. The cyclic nucleotide-gated channel, AtCNGC10, influences salt tolerance in Arabidopsis. Physiol. Plant. 134: 499-507 (2008).

Guo L, Chen S, Liu K, Liu Y, Ni L, Zhang K, Zhang L. Isolation of heat shock factor HsfA1a-binding sites in vivo revealed variations of heat shock elements in Arabidopsis thaliana. Plant Cell Physiol. 49: 1306-1315 (2008).

Guo L, Ho CM, Kong Z, Lee YR, Qian Q, Liu B. Evaluating the microtubule cytoskeleton and its interacting proteins in monocots by mining the rice genome. Ann. Bot. (Lond.) 103: 387-402 (2009).

Guo L, Zhou J, Elling AA, Charron JB, Deng XW. Histone modifications and expression of light regulated genes in Arabidopsis are cooperatively influenced by changing light conditions. Plant Physiol. 147: 2070-2083 (2008).

Guo S, Yin H, Zhang X, Zhao F, Li P, Chen S, Zhao Y, Zhang H. Molecular cloning and characterization of a vacuolar H+ -pyrophosphatase gene, SsVP, from the halophyte Suaeda salsa and its overexpression increases salt and drought tolerance of Arabidopsis. Plant Mol. Biol. 60: 41-50 (2006).

Guo WJ, Ho TH. An ABA-induced protein HVA22 inhibits GA-mediated programmed cell death in cereal aleurone cells. Plant Physiol. 147: 1710-1722 (2008).

Guo Y, Cai Z, Gan S. Transcriptome of Arabidopsis leaf senescence. Plant Cell Environ. 27: 521-549 (2004).

Guo Y, Gan S. AtNAP, a NAC family transcription factor, has an important role in leaf senescence. Plant J. 46: 601-612 (2006).

Guo Y, Halfter U, Ishitani M, Zhu JK. Molecular characterization of functional domains in the protein kinase sos2 that is required for plant salt tolerance. Plant Cell 13: 1383-1400 (2001).

Guo Y, Mietkiewska E, Francis T, Katavic V, Brost JM, Giblin M, Barton DL, Taylor DC. Increase in nervonic acid content in transformed yeast and transgenic plants by introduction of a Lunaria annua L. 3-ketoacyl-CoA synthase (KCS) gene. Plant Mol. Biol. 69: 565-575 (2009).

Guo Y, Qiu QS, Quintero FJ, Pardo JM, Ohta M, Zhang C, Schumaker KS, Zhu JK. Transgenic evaluation of activated mutant alleles of SOS2 reveals a critical requirement for its kinase activity and C-terminal regulatory domain for salt tolerance in Arabidopsis thaliana. Plant Cell 16: 435-449 (2004).

Guo YF, Chen FJ, Zhang FS, Mi GH. Auxin transport from shoot to root is involved in the response of lateral root growth to localized supply of nitrate in maize. Plant Sci. 169: 894-900 (2005).

Gupta KJ, Stoimenova M, Kaiser WM. In higher plants, only root mitochondria, but not leaf mitochondria reduce nitrite to NO, in vitro and in situ. J. Exp. Bot. 56: 2601-2609 (2005).

Gupta R, Ting JT, Sokolov LN, Johnson SA, Luan S. A tumor suppressor homolog, AtPTEN1, is essential for pollen development in Arabidopsis. Plant Cell 14: 2495-2507 (2002).

Gusmaroli G, Feng S, Deng XW. The Arabidopsis CSN5A and CSN5B subunits are present in distinct COP9 signalosome complexes, and mutations in their JAMM domains exhibit differential dominant negative effects on development. Plant Cell 16: 2984-3001 (2004).

Gusmaroli G, Figueroa P, Serino G, Deng XW. Role of the MPN subunits in COP9 signalosome assembly and activity, and their regulatory interaction with Arabidopsis Cullin3-based E3 ligases. Plant Cell 19: 564-581 (2007).

Gustavsson N, Kokke BP, Harndahl U, Silow M, Bechtold U, Poghosyan Z, Murphy D, Boelens WC, Sundby C. A peptide methionine sulfoxide reductase highly expressed in photosynthetic tissue in Arabidopsis thaliana can protect the chaperone-like activity of a chloroplast-localized small heat shock protein. Plant J. 29: 545-553 (2002).

Gustin JL, Loureiro ME, Kim D, Na G, Tikhonova M, Salt DE. MTP1-dependent Zn sequestration into shoot vacuoles suggests dual roles in Zn tolerance and accumulation in Zn-hyperaccumulating plants. Plant J. 57: 1116-1127 (2009).

Gutha LR, Reddy AR. Rice DREB1B promoter shows distinct stress-specific responses, and the overexpression of cDNA in tobacco confers improved abiotic and biotic stress tolerance. Plant Mol. Biol. 68: 533-555 (2008).

Gutierrez L, Conejero G, Castelain M, Guenin S, Verdeil JL, Thomasset B, Van Wuytswinkel O. Identification of new gene expression regulators specifically expressed during plant seed maturation. J. Exp. Bot. 57: 1919-1932 (2006).

Gutierrez L, Van Wuytswinkel O, Castelain M, Bellini C. Combined networks regulating seed maturation. Trends Plant Sci. 12: 294-300 (2007).

Gutierrez RA, Gifford ML, Poultney C, Wang R, Shasha DE, Coruzzi GM, Crawford NM. Insights into the genomic nitrate response using genetics and the Sungear Software System. J. Exp. Bot. 58: 2359-2367 (2007).

Gutierrez RA, Larson MD, Wilkerson C. The plant-specific database. Classification of Arabidopsis proteins based on their phylogenetic profile. Plant Physiol. 135: 1888-1892 (2004).

Gutierrez RA, Stokes TL, Thum K, Xu X, Obertello M, Katari MS, Tanurdzic M, Dean A, Nero DC, McClung CR, Coruzzi GM. Systems approach identifies an organic nitrogen-responsive gene network that is regulated by the master clock control gene CCA1. Proc. Natl. Acad. Sci. U.S.A. 105: 4939-4944 (2008).

Gutierrez-Alcala G, Calo L, Gros F, Caissard JC, Gotor C, Romero LC. A versatile promoter for the expression of proteins in glandular and non-glandular trichomes from a variety of plants. J. Exp. Bot. 56: 2487-2494 (2005).

Gutierrez-Marcos JF, Dal Pra M, Giulini A, Costa LM, Gavazzi G, Cordelier S, Sellam O, Tatout C, Paul W, Perez P, Dickinson HG, Consonni G. empty pericarp4 encodes a mitochondrion-targeted pentatricopeptide repeat protein necessary for seed development and plant growth in maize. Plant Cell 19: 196-210 (2007).

Gutierrez-Marcos JF, Roberts MA, Campbell EI, Wray JL. Three members of a novel small gene-family from Arabidopsis thaliana able to complement functionally an Escherichia coli mutant defective in PAPS reductase activity encode proteins with a thioredoxin-like domain and "APS reductase" activity. Proc. Natl. Acad. Sci. U.S.A. 93: 13377-13382 (1996).

Gutierrez-Nava Md Mde L, Gillmor CS, Jimenez LF, Guevara-Garcia A, Leon P. CHLOROPLAST BIOGENESIS genes act cell and noncell autonomously in early chloroplast development. Plant Physiol. 135: 471-482 (2004).

Gutman BL, Niyogi KK. Chlamydomonas and Arabidopsis. A dynamic duo. Plant Physiol. 135: 607-610 (2004).

Gutterson N, Reuber TL. Regulation of disease resistance pathways by AP2/ERF transcription factors. Curr. Opin. Plant Biol. 7: 465-471 (2004).

Gutterson N, Zhang JZ. Genomics applications to biotech traits: a revolution in progress? Curr. Opin. Plant Biol. 7: 226-230 (2004).

Guy RD, Vanlerberghe GC. Partitioning of respiratory electrons in the dark in leaves of transgenic tobacco with modified levels of alternative oxidase. Physiol. Plant. 125: 171-180 (2005).

Guyer D, Patton D, Ward E. Evidence for cross-pathway regulation of metabolic gene expression in plants. Proc. Natl. Acad. Sci. U.S.A. 92: 4997-5000 (1995).

Guyomarc'h S, Benhamed M, Lemonnier G, Renou JP, Zhou DX, Delarue M. MGOUN3: evidence for chromatin-mediated regulation of FLC expression. J. Exp. Bot. 57: 2111-2119 (2006).

Guyomarc'h S, Vernoux T, Traas J, Zhou DX, Delarue M. MGOUN3, an Arabidopsis gene with TetratricoPeptide-Repeat-related motifs, regulates meristem cellular organization. J. Exp. Bot. 55: 673-684 (2004).

Guyot R, Cheng X, Su Y, Cheng Z, Schlagenhauf E, Keller B, Ling HQ. Complex organization and evolution of the tomato pericentromeric region at the FER gene locus. Plant Physiol. 138: 1205-1215 (2005).

Guzzo F, Portaluppi P, Grisi R, Barone S, Zampieri S, Franssen H, Levi M. Reduction of cell size induced by enod40 in Arabidopsis thaliana. J. Exp. Bot. 56: 507-513 (2005).

Ha SB, Lee SB, Lee Y, Yang K, Lee N, Jang SM, Chung JS, Jung S, Kim YS, Wi SG, Back K. The plastidic Arabidopsis protoporphyrinogen IX oxidase gene, with or without the transit sequence, confers resistance to the diphenyl ether herbicide in rice. Plant Cell Environ. 27: 79-88 (2004).

Ha SB, Smith AP, Howden R, Dietrich WM, Bugg S, O'Connell MJ, Goldsbrough PB, Cobbett CS. Phytochelatin synthase genes from Arabidopsis and the yeast Schizosaccharomyces pombe. Plant Cell 11: 1153-1164 (1999).

Haake V, Cook D, Riechmann JL, Pineda O, Thomashow MF, Zhang JZ. Transcription factor CBF4 is a regulator of drought adaptation in Arabidopsis. Plant Physiol. 130: 639-648 (2002).

Haas FH, Heeg C, Queiroz R, Bauer A, Wirtz M, Hell R. Mitochondrial serine acetyltransferase functions as pacemaker of cysteine synthesis in plant cells. Plant Physiol. 148: 1055-1067 (2008).

Haas TJ, Sliwinski MK, Martínez DE, Preuss M, Ebine K, Ueda T, Nielsen E, Odorizzi G, Otegui MS. The Arabidopsis AAA ATPase SKD1 is involved in multivesicular endosome function and interacts with its positive regulator LYST-INTERACTING PROTEIN5. Plant Cell 19: 1295-1312 (2007).

Haberer G, Hindemitt T, Meyers BC, Mayer KF. Transcriptional similarities, dissimilarities, and conservation of cis-elements in duplicated genes of Arabidopsis. Plant Physiol. 136: 3009-3022 (2004).

Haberer G, Mader MT, Kosarev P, Spannagl M, Yang L, Mayer KF. Large-scale cis-element detection by analysis of correlated expression and sequence conservation between Arabidopsis and Brassica oleracea. Plant Physiol. 142: 1589-1602 (2006).

Haberer G, Young S, Bharti AK, Gundlach H, Raymond C, Fuks G, Butler E, Wing RA, Rounsley S, Birren B, Nusbaum C, Mayer KF, Messing J. Structure and architecture of the maize genome. Plant Physiol. 139: 1612-1624 (2005).

Hacham Y, Avraham T, Amir R. The N-terminal region of Arabidopsis cystathionine gamma-synthase plays an important regulatory role in methionine metabolism. Plant Physiol. 128: 454-462 (2002).

Hacham Y, Matityahu I, Schuster G, Amir R. Overexpression of mutated forms of aspartate kinase and cystathionine gamma-synthase in tobacco leaves resulted in the high accumulation of methionine and threonine. Plant J. 54: 260-271 (2008).

Hacham Y, Schuster G, Amir R. An in vivo internal deletion in the N-terminus region of Arabidopsis cystathionine gamma-synthase results in CGS expression that is insensitive to methionine. Plant J. 45: 955-967 (2006).

Hacham Y, Song L, Schuster G, Amir R. Lysine enhances methionine content by modulating the expression of S-adenosylmethionine synthase. Plant J. 51: 850-861 (2007).

Hackett RM, Ho CW, Lin Z, Foote HC, Fray RG, Grierson D. Antisense inhibition of the Nr gene restores normal ripening to the tomato Never-ripe mutant, consistent with the ethylene receptor- inhibition model. Plant Physiol. 124: 1079-1086 (2000).

Hada H, Hidema J, Maekawa M, Kumagai T. Higher amounts of anthocyanins and UV-absorbing compounds effectively lowered CPD photorepair in purple rice (Oryza sativa L.). Plant Cell Environ. 26: 1691-1701 (2003).

Hadiarto T, Nanmori T, Matsuoka D, Iwasaki T, Sato KI, Fukami Y, Azuma T, Yasuda T. Activation of Arabidopsis MAPK kinase kinase (AtMEKK1) and induction of AtMEKK1-AtMEK1 pathway by wounding. Planta 223: 708-713 (2006).

Haerizadeh F, Wong CE, Singh MB, Bhalla PL. Genome-wide analysis of gene expression in soybean shoot apical meristem. Plant Mol. Biol. 69: 711-727 (2009).

Haga K, Takano M, Neumann R, Iino M. The rice COLEOPTILE PHOTOTROPISM1 gene encoding an ortholog of Arabidopsis NPH3 is required for phototropism of coleoptiles and lateral translocation of auxin. Plant Cell 17: 103-115 (2005).

Hagenbeek D, Quatrano RS, Rock CD. Trivalent ions activate abscisic acid-inducible promoters through an ABI1-dependent pathway in rice protoplasts. Plant Physiol. 123: 1553-1560 (2000).

Hajduch M, Casteel JE, Hurrelmeyer KE, Song Z, Agrawal GK, Thelen JJ. Proteomic analysis of seed filling in Brassica napus. Developmental characterization of metabolic isozymes using high-resolution two-dimensional gel electrophoresis. Plant Physiol. 141: 32-46 (2006).

Hajek T, Honys D, Witters E, Capkova V. Identification of stress-induced mitochondrial proteins in cultured tobacco cells. Physiol. Plant. 124: 12-24 (2005).

Haldrup A, Naver H, Scheller HV. The interaction between plastocyanin and photosystem I is inefficient in transgenic Arabidopsis plants lacking the PSI-N subunit of photosystem I. Plant J. 17: 689-698 (1999).

Halim VA, Altmann S, Ellinger D, Eschen-Lippold L, Miersch O, Scheel D, Rosahl S. PAMP-induced defense responses in potato require both salicylic acid and jasmonic acid. Plant J. 57: 230-242 (2009).

Halkier BA, Gershenzon J. Biology and biochemistry of glucosinolates. Annu. Rev. Plant Biol. 57: 303-333 (2006).

Hall A, Bastow RM, Davis SJ, Hanano S, McWatters HG, Hibberd V, Doyle MR, Sung S, Halliday KJ, Amasino RM, Millar AJ. The TIME FOR COFFEE gene maintains the amplitude and timing of Arabidopsis circadian clocks. Plant Cell 15: 2719-2729 (2003).

Hall A, Kozma-Bognar L, Toth R, Nagy F, Millar AJ. Conditional circadian regulation of PHYTOCHROME A gene expression. Plant Physiol. 127: 1808-1818 (2001).

Hall AE, Bleecker AB. Analysis of combinatorial loss-of-function mutants in the Arabidopsis ethylene receptors reveals that the ers1 etr1 double mutant has severe developmental defects that are EIN2 dependent. Plant Cell 15: 2032-2041 (2003).

Hall AE, Fiebig A, Preuss D. Beyond the Arabidopsis genome: opportunities for comparative genomics. Plant Physiol. 129: 1439-1447 (2002).

Hall AE, Findell JL, Schaller GE, Sisler EC, Bleecker AB. Ethylene perception by the ERS1 protein in Arabidopsis. Plant Physiol. 123: 1449-1458 (2000).

Hall AE, Grace Chen Q, Findell JL, Eric Schaller G, Bleecker AB. The relationship between ethylene binding and dominant insensitivity conferred by mutant forms of the ETR1 ethylene receptor. Plant Physiol. 121: 291-300 (1999).

Hall D, Evans AR, Newbury HJ, Pritchard J. Functional analysis of CHX21: a putative sodium transporter in Arabidopsis. J. Exp. Bot. 57: 1201-1210 (2006).

Hall Q, Cannon MC. The cell wall hydroxyproline-rich glycoprotein RSH is essential for normal embryo development in Arabidopsis. Plant Cell 14: 1161-1172 (2002).

Halliday KJ, Bolle C, Chua NH, Whitelam GC. Overexpression of rice phytochrome A partially complements phytochrome B deficiency in Arabidopsis. Planta 207: 401-409 (1999).

Halliday KJ, Salter MG, Thingnaes E, Whitelam GC. Phytochrome control of flowering is temperature sensitive and correlates with expression of the floral integrator FT. Plant J. 33: 875-885 (2003).

Hallouin M, Ghelis T, Brault M, Bardat F, Cornel D, Miginiac E, Rona JP, Sotta B, Jeannette E. Plasmalemma abscisic acid perception leads to RAB18 expression via phospholipase D activation in Arabidopsis suspension cells. Plant Physiol. 130: 265-272 (2002).

Halperin SJ, Gilroy S, Lynch JP. Sodium chloride reduces growth and cytosolic calcium, but does not affect cytosolic pH, in root hairs of Arabidopsis thaliana L. J. Exp. Bot. 54: 1269-1280 (2003).

Ham JH, Kim MG, Lee SY, Mackey D. Layered basal defenses underlie non-host resistance of Arabidopsis to Pseudomonas syringae pv. phaseolicola. Plant J. 51: 604-616 (2007).

Hamada A, Hibino T, Nakamura T, Takabe T. Na(+)/H(+) antiporter from Synechocystis species PCC 6803, homologous to SOS1, contains an aspartic residue and long C-terminal tail important for the carrier activity. Plant Physiol. 125: 437-446 (2001).

Hamada A, Shono M, Xia T, Ohta M, Hayashi Y, Tanaka A, Hayakawa T. Isolation and characterization of a Na+/H+ antiporter gene from the halophyte Atriplex gmelini. Plant Mol. Biol. 46: 35-42 (2001).

Hamann T, Bennett M, Mansfield J, Somerville C. Identification of cell wall stress as a hexose-dependent and osmosensitive regulator of plant responses. Plant J. 57: 1015-1026 (2009).

Hamant O, Ma H, Cande WZ. Genetics of meiotic prophase I in plants. Annu. Rev. Plant Biol. 57: 267-302 (2006).

Hamant O, Nogue F, Belles-Boix E, Jublot D, Grandjean O, Traas J, Pautot V. The KNAT2 homeodomain protein interacts with ethylene and cytokinin signaling. Plant Physiol. 130: 657-665 (2002).

Hamazato F, Shinomura T, Hanzawa H, Chory J, Furuya M. Fluence and wavelength requirements for Arabidopsis CAB gene induction by different phytochromes. Plant Physiol. 115: 1533-1540 (1997).

Hamburger D, Rezzonico E, MacDonald-Comber Petetot J, Somerville C, Poirier Y. Identification and characterization of the Arabidopsis PHO1 gene involved in phosphate loading to the xylem. Plant Cell 14: 889-902 (2002).

Hamel LP, Nicole MC, Sritubtim S, Morency MJ, Ellis M, Ehlting J, Beaudoin N, Barbazuk B, Klessig D, Lee J, Martin G, Mundy J, Ohashi Y, Scheel D, Sheen J, Xing T, Zhang S, Seguin A, Ellis BE. Ancient signals: comparative genomics of plant MAPK and MAPKK gene families. Trends Plant Sci. 11: 192-198 (2006).

Hammargren J, Rosenquist S, Jansson C, Knorpp C. A novel connection between nucleotide and carbohydrate metabolism in mitochondria: sugar regulation of the Arabidopsis nucleoside diphosphate kinase 3a gene. Plant Cell Rep. 27: 529-534 (2008).

Hammes UZ, Nielsen E, Honaas LA, Taylor CG, Schachtman DP. AtCAT6, a sink-tissue-localized transporter for essential amino acids in Arabidopsis. Plant J. 48: 414-426 (2006).

Hammond JP, Bennett MJ, Bowen HC, Broadley MR, Eastwood DC, May ST, Rahn C, Swarup R, Woolaway KE, White PJ. Changes in gene expression in Arabidopsis shoots during phosphate starvation and the potential for developing smart plants. Plant Physiol. 132: 578-596 (2003).

Hampton CR, Bowen HC, Broadley MR, Hammond JP, Mead A, Payne KA, Pritchard J, White PJ. Cesium toxicity in Arabidopsis. Plant Physiol. 136: 3824-3837 (2004).

Han IS, Tseng TS, Eisinger W, Briggs WR. Phytochrome A regulates the intracellular distribution of phototropin 1-green fluorescent protein in Arabidopsis thaliana. Plant Cell 20: 2835-2847 (2008).

Han L, Mason M, Risseeuw EP, Crosby WL, Somers DE. Formation of an SCF complex is required for proper regulation of circadian timing. Plant J. 40: 291-301 (2004).

Han P, García-Ponce B, Fonseca-Salazar G, Alvarez-Buylla ER, Yu H. AGAMOUS-LIKE 17, a novel flowering promoter, acts in a FT-independent photoperiod pathway. Plant J. 55: 253-265 (2008).

Han P, Li Q, Zhu YX. Mutation of Arabidopsis BARD1 causes meristem defects by failing to confine WUSCHEL expression to the organizing center. Plant Cell 20: 1482-1493 (2008).

Han S, Green L, Schnell DJ. The signal peptide peptidase is required for pollen function in Arabidopsis. Plant Physiol. 149: 1289-1301 (2009).

Han SY, Kitahata N, Sekimata K, Saito T, Kobayashi M, Nakashima K, Yamaguchi-Shinozaki K, Shinozaki K, Yoshida S, Asami T. A novel inhibitor of 9-cis-epoxycarotenoid dioxygenase in abscisic acid biosynthesis in higher plants. Plant Physiol. 135: 1574-1582 (2004).

Han Y, Jiang JF, Liu HL, Ma QB, Xu WZ, Xu YY, Xu ZH, Chong K. Overexpression of OsSIN, encoding a novel small protein, causes short internodes in Oryza sativa. Plant Sci. 169: 487-495 (2005).

Han Y, Korban SS. An overview of the apple genome through BAC end sequence analysis. Plant Mol. Biol. 67: 581-588 (2008).

Hanada K, Zou C, Lehti-Shiu MD, Shinozaki K, Shiu SH. Importance of lineage-specific expansion of plant tandem duplicates in the adaptive response to environmental stimuli. Plant Physiol. 148: 993-1003 (2008).

Hanaoka H, Noda T, Shirano Y, Kato T, Hayashi H, Shibata D, Tabata S, Ohsumi Y. Leaf senescence and starvation-induced chlorosis are accelerated by the disruption of an Arabidopsis autophagy gene. Plant Physiol. 129: 1181-1193 (2002).

Handford MG, Baldwin TC, Goubet F, Prime TA, Miles J, Yu X, Dupree P. Localisation and characterisation of cell wall mannan polysaccharides in Arabidopsis thaliana. Planta 218: 27-36 (2003).

Hanfrey C, Sommer S, Mayer MJ, Burtin D, Michael AJ. Arabidopsis polyamine biosynthesis: absence of ornithine decarboxylase and the mechanism of arginine decarboxylase activity. Plant J. 27: 551-560 (2001).

Hanikenne M, Motte P, Wu MCS, Wang T, Loppes R, Matagne RF. A mitochondrial half-size ABC transporter is involved in cadmium tolerance in Chlamydomonas reinhardtii. Plant Cell Environ. 28: 863-873 (2005).

Hanin M, Paszkowski J. Plant genome modification by homologous recombination. Curr. Opin. Plant Biol. 6: 157-162 (2003).

Hanitzsch M, Schnitzer D, Seidel T, Golldack D, Dietz KJ. Transcript level regulation of the vacuolar H(+)-ATPase subunit isoforms VHA-a, VHA-E and VHA-G in Arabidopsis thaliana. Mol. Membr. Biol. 24: 507-518 (2007).

Hanke GT, Endo T, Satoh F, Hase T. Altered photosynthetic electron channelling into cyclic electron flow and nitrite assimilation in a mutant of ferredoxin:NADP(H) reductase. Plant Cell Environ. 31: 1017-1028 (2008).

Hanke GT, Kimata-Ariga Y, Taniguchi I, Hase T. A post genomic characterization of Arabidopsis ferredoxins. Plant Physiol. 134: 255-264 (2004).

Hanke GT, Okutani S, Satomi Y, Takao T, Suzuki A, Hase T. Multiple iso-proteins of FNR in Arabidopsis: evidence for different contributions to chloroplast function and nitrogen assimilation. Plant Cell Environ. 28: 1146-1157 (2005).

Hannah MA, Wiese D, Freund S, Fiehn O, Heyer AG, Hincha DK. Natural genetic variation of freezing tolerance in Arabidopsis. Plant Physiol. 142: 98-112 (2006).

Hannemann J, Poorter H, Usadel B, Blasing OE, Finck A, Tardieu F, Atkin OK, Pons T, Stitt M, Gibon Y. Xeml Lab: a tool that supports the design of experiments at a graphical interface and generates computer-readable metadata files, which capture information about genotypes, growth conditions, environmental perturbations and sampling strategy. Plant Cell Environ. 32: 1185-1200 (2009).

Hannoufa A, Negruk V, Eisner G, Lemieux B. The CER3 gene of Arabidopsis thaliana is expressed in leaves, stems, roots, flowers and apical meristems. Plant J. 10: 459-467 (1996).

Hansch R, Kurz T, Schulze J, Mendel RR, Cerff R, Hehl R. Anaerobic induction of the maize GapC4 promoter in poplar leaves requires light and high CO2. Planta 218: 79-86 (2003).

Hansch R, Lang C, Riebeseel E, Lindigkeit R, Gessler A, Rennenberg H, Mendel RR. Plant sulfite oxidase as novel producer of H2O2: combination of enzyme catalysis with a subsequent non-enzymatic reaction step. J. Biol. Chem. 281: 6884-6888 (2006).

Hansch R, Mendel RR, Cerff R, Hehl R. Light-dependent anaerobic induction of the maize glyceraldehyde-3-phosphate dehydrogenase 4 (GapC4) promoter in Arabidopsis thaliana and Nicotiana tabacum. Ann. Bot. (Lond.) 91: 149-154 (2003).

Hansen BG, Halkier BA. New insight into the biosynthesis and regulation of indole compounds in Arabidopsis thaliana. Planta 221: 603-606 (2005).

Hansen BG, Kerwin RE, Ober JA, Lambrix VM, Mitchell-Olds T, Gershenzon J, Halkier BA, Kliebenstein DJ. A novel 2-oxoacid-dependent dioxygenase involved in the formation of the goiterogenic 2-hydroxybut-3-enyl glucosinolate and generalist insect resistance in Arabidopsis thaliana. Plant Physiol. 148: 2096-2108 (2008).

Hansen BG, Kliebenstein DJ, Halkier BA. Identification of a flavin-monooxygenase as the S-oxygenating enzyme in aliphatic glucosinolate biosynthesis in Arabidopsis. Plant J. 50: 902-910 (2007).

Hansen CH, Du L, Naur P, Olsen CE, Axelsen KB, Hick AJ, Pickett JA, Halkier BA. CYP83b1 is the oxime-metabolizing enzyme in the glucosinolate pathway in Arabidopsis. J. Biol. Chem. 276: 24790-24796 (2001).

Hansen CH, Wittstock U, Olsen CE, Hick AJ, Pickett JA, Halkier BA. Cytochrome P450 CYP79F1 from Arabidopsis catalyzes the conversion of dihomomethionine and trihomomethionine to the corresponding aldoximes in the biosynthesis of aliphatic glucosinolates. J. Biol. Chem. 276: 11078-11085 (2001).

Hansen EH, Osmani SA, Kristensen C, Moller BL, Hansen J. Substrate specificities of family 1 UGTs gained by domain swapping. Phytochemistry 70: 473-482 (2009).

Hansen JD, Pyee J, Xia Y, Wen TJ, Robertson DS, Kolattukudy PE, Nikolau BJ, Schnable PS. The glossy1 locus of maize and an epidermis-specific cDNA from Kleinia odora define a class of receptor-like proteins required for the normal accumulation of cuticular waxes. Plant Physiol. 113: 1091-1100 (1997).

Hanson AD, Gregory JF 3rd. Synthesis and turnover of folates in plants. Curr. Opin. Plant Biol. 5: 244-249 (2002).

Hanson J, Hanssen M, Wiese A, Hendriks MM, Smeekens S. The sucrose regulated transcription factor bZIP11 affects amino acid metabolism by regulating the expression of ASPARAGINE SYNTHETASE1 and PROLINE DEHYDROGENASE2. Plant J. 53: 935-949 (2008).

Hanson J, Johannesson H, Engstrom P. Sugar-dependent alterations in cotyledon and leaf development in transgenic plants expressing the HDZhdip gene ATHB13. Plant Mol. Biol. 45: 247-262 (2001).

Hansson A, Jensen PE. Chlorophyll limitation in plants remodels and balances the photosynthetic apparatus by changing the accumulation of photosystems I and II through two different approaches. Physiol. Plant. 135: 214-228 (2009).

Hanton SL, Chatre L, Matheson LA, Rossi M, Held MA, Brandizzi F. Plant Sar1 isoforms with near-identical protein sequences exhibit different localisations and effects on secretion. Plant Mol. Biol. 67: 283-294 (2008).

Hanton SL, Matheson LA, Chatre L, Brandizzi F. Dynamic organisation of COPII coat proteins at endoplasmic reticulum export sites in plant cells. Plant J. 57: 963-974 (2009).

Hanumappa M, Choi G, Ryu S, Choi G. Modulation of flower colour by rationally designed dominant-negative chalcone synthase. J. Exp. Bot. 58: 2471-2478 (2007).

Hanzawa Y, Imai A, Michael A, Komeda Y, Takahashi T. Characterization of the spermidine synthase-related gene family in Arabidopsis thaliana. FEBS Lett. 527: 176 (2002).

Hanzawa Y, Imai A, Michael AJ, Komeda Y, Takahashi T. Characterization of the spermidine synthase-related gene family in Arabidopsis thaliana. FEBS Lett. 527: 176-180 (2002).

Hanzawa Y, Takahashi T, Michael AJ, Burtin D, Long D, Pineiro M, Coupland G, Komeda Y. ACAULIS5, an Arabidopsis gene required for stem elongation, encodes a spermine synthase. EMBO J. 19: 4248-4256 (2000).

Happel N, Honing S, Neuhaus JM, Paris N, Robinson DG, Holstein SE. Arabidopsis mu A-adaptin interacts with the tyrosine motif of the vacuolar sorting receptor VSR-PS1. Plant J. 37: 678-693 (2004).

Hara-Nishimura I, Matsushima R. A wound-inducible organelle derived from endoplasmic reticulum: a plant strategy against environmental stresses? Curr. Opin. Plant Biol. 6: 583-588 (2003).

Harada A, Shimazaki K. Measurement of changes in cytosolic Ca2+ in Arabidopsis guard cells and mesophyll cells in response to blue light. Plant Cell Physiol. 50: 360-373 (2009).

Harada E, Kusano T, Sano H. Differential expression of genes encoding enzymes involved in sulfur assimilation pathways in response to wounding and jasmonate in Arabidopsis thaliana. J. Plant Physiol. 156: 272-276 (2000).

Harada H, Kuromori T, Hirayama T, Shinozaki K, Leigh RA. Quantitative trait loci analysis of nitrate storage in Arabidopsis leading to an investigation of the contribution of the anion channel gene, AtCLC-c, to variation in nitrate levels. J. Exp. Bot. 55: 2005-2014 (2004).

Harada H, Leigh RA. Genetic mapping of natural variation in potassium concentrations in shoots of Arabidopsis thaliana. J. Exp. Bot. 57: 953-960 (2006).

Haraguchi Y, Kadokura Y, Nakamoto M, Onouchi H, Naito S. Ribosome stacking defines CGS1 mRNA degradation sites during nascent peptide-mediated translation arrest. Plant Cell Physiol. 49: 314-323 (2008).

Haralampidis K, Milioni D, Rigas S, Hatzopoulos P. Combinatorial interaction of cis elements specifies the expression of the Arabidopsis AtHsp90-1 gene. Plant Physiol. 129: 1138-1149 (2002).

Haran S, Logendra S, Seskar M, Bratanova M, Raskin I. Characterization of Arabidopsis acid phosphatase promoter and regulation of acid phosphatase expression. Plant Physiol. 124: 615-626 (2000).

Harari-Steinberg O, Ohad I, Chamovitz DA. Dissection of the light signal transduction pathways regulating the two early light-induced protein genes in Arabidopsis. Plant Physiol. 127: 986-997 (2001).

Harashima H, Shinmyo A, Sekine M. Phosphorylation of threonine 161 in plant cyclin-dependent kinase A is required for cell division by activation of its associated kinase. Plant J. 52: 435-448 (2007).

Harder PA, Silverstein RA, Meier I. Conservation of matrix attachment region-binding filament-like protein 1 among higher plants. Plant Physiol. 122: 225-234 (2000).

Hardie DG. Plant protein serine/threonine kinases: classification and functions. Annu. Rev. Plant Physiol. Plant Mol. Biol. 50: 97-131 (1999).

Hardtke CS. Root development - branching into novel spheres. Curr. Opin. Plant Biol. 9: 66-71 (2006).

Hare PD, Cress WA. Metabolic implications of stress-induced proline accumulation in plants. Plant Growth Regulation 21: 79-102 (1997).

Hare PD, Cress WA, van Staden J. Proline synthesis and degradation: a model system for elucidating stress-related signal transduction. J. Exp. Bot. 50: 413-434 (1999).

Hare PD, Cress WA, Van Staden J. Dissecting the roles of osmolyte accumulation during stress. Plant Cell Environ. 21: 535-553 (1998).

Hare PD, Moller SG, Huang LF, Chua NH. LAF3, a novel factor required for normal phytochrome A signaling. Plant Physiol. 133: 1592-1604 (2003).

Harholt J, Jensen JK, Sorensen SO, Orfila C, Pauly M, Scheller HV. ARABINAN DEFICIENT 1 is a putative arabinosyltransferase involved in biosynthesis of pectic arabinan in Arabidopsis. Plant Physiol. 140: 49-58 (2006).

Haritatos E, Ayre BG, Turgeon R. Identification of phloem involved in assimilate loading in leaves by the activity of the galactinol synthase promoter. Plant Physiol. 123: 929-938 (2000).

Haritatos E, Medville R, Turgeon R. Minor vein structure and sugar transport in Arabidopsis thaliana. Planta 211: 105-111 (2000).

Harlow GR, Jenkins ME, Pittalwala TS, Mount DW. Isolation of uvh1, an Arabidopsis mutant hypersensitive to ultraviolet light and ionizing radiation. Plant Cell 6: 227-235 (1994).

Harmer SL, Hogenesch JB, Straume M, Chang HS, Han B, Zhu T, Wang X, Kreps JA, Kay SA. Orchestrated transcription of key pathways in Arabidopsis by the circadian clock. Science 290: 2110-2113 (2000).

Harmer SL, Kay SA. Positive and negative factors confer phase-specific circadian regulation of transcription in Arabidopsis. Plant Cell 17: 1926-1940 (2005).

Harmon F, Imaizumi T, Gray WM. CUL1 regulates TOC1 protein stability in the Arabidopsis circadian clock. Plant J. 55: 568-579 (2008).

Harms K, von Ballmoos P, Brunold C, Hofgen R, Hesse H. Expression of a bacterial serine acetyltransferase in transgenic potato plants leads to increased levels of cysteine and glutathione. Plant J. 22: 335-343 (2000).

Harper AD, Bar-Peled M. Biosynthesis of UDP-xylose. Cloning and characterization of a novel Arabidopsis gene family, UXS, encoding soluble and putative membrane-bound UDP-glucuronic acid decarboxylase isoforms. Plant Physiol. 130: 2188-2198 (2002).

Harper JF, Breton G, Harmon A. Decoding Ca2+ signals through plant protein kinases. Annu. Rev. Plant Biol. 55: 263-288 (2004).

Harper RM, Stowe-Evans EL, Luesse DR, Muto H, Tatematsu K, Watahiki MK, Yamamoto K, Liscum E. The NPH4 locus encodes the auxin response factor ARF7, a conditional regulator of differential growth in aerial Arabidopsis tissue. Plant Cell 12: 757-770 (2000).

Harrar Y, Bellec Y, Bellini C, Faure JD. Hormonal control of cell proliferation requires PASTICCINO genes. Plant Physiol. 132: 1217-1227 (2003).

Harris DM, Myrick TL, Rundle SJ. The Arabidopsis homolog of yeast TAP42 and mammalian alpha4 binds to the catalytic subunit of protein phosphatase 2A and is induced by chilling. Plant Physiol. 121: 609-618 (1999).

Harrison PW, Kruger NJ. Validation of the design of feeding experiments involving [(14)C]substrates used to monitor metabolic flux in higher plants. Phytochemistry 69: 2920-2927 (2008).

Hartel H, Lokstein H, Dormann P, Grimm B, Benning C. Changes in the composition of the photosynthetic apparatus in the galactolipid-deficient dgd1 mutant of Arabidopsis thaliana. Plant Physiol. 115: 1175-1184 (1997).

Harthill JE, Meek SE, Morrice N, Peggie MW, Borch J, Wong BH, Mackintosh C. Phosphorylation and 14-3-3 binding of Arabidopsis trehalose-phosphate synthase 5 in response to 2-deoxyglucose. Plant J. 47: 211-223 (2006).

Hartig K, Beck E. Assessment of lovastatin application as tool in probing cytokinin-mediated cell cycle regulation. Physiol. Plant. 125: 260-267 (2005).

Hartje S, Zimmermann S, Klonus D, Mueller-Roeber B. Functional characterisation of LKT1, a K+ uptake channel from tomato root hairs, and comparison with the closely related potato inwardly rectifying K+ channel SKT1 after expression in Xenopus oocytes. Planta 210: 723-731 (2000).

Hartmann TN, Fricker MD, Rennenberg H, Meyer AJ. Cell-specific measurement of cytosolic glutathione in poplar leaves. Plant Cell Environ. 26: 965-975 (2003).

Hartmann U, Sagasser M, Mehrtens F, Stracke R, Weisshaar B. Differential combinatorial interactions of cis-acting elements recognized by R2R3-MYB, BZIP, and BHLH factors control light-responsive and tissue-specific activation of phenylpropanoid biosynthesis genes. Plant Mol. Biol. 57: 155-171 (2005).

Hartmann U, Valentine WJ, Christie JM, Hays J, Jenkins GI, Weisshaar B. Identification of UV/blue light-response elements in the Arabidopsis thaliana chalcone synthase promoter using a homologous protoplast transient expression system. Plant Mol. Biol. 36: 741-754 (1998).

Hartweck LM, Genger RK, Grey WM, Olszewski NE. SECRET AGENT and SPINDLY have overlapping roles in the development of Arabidopsis thaliana L. Heyn. J. Exp. Bot. 57: 865-875 (2006).

Harvaux M, Kloppstech K. The protective functions of carotenoid and flavonoid pigments against excess visible radiation at chilling temperature investigated in Arabidopsis npq and tt mutants. Planta 213: 953-966 (2001).

Hasan M, Friedt W, Pons-Kuhnemann J, Freitag NM, Link K, Snowdon RJ. Association of gene-linked SSR markers to seed glucosinolate content in oilseed rape (Brassica napus ssp. napus). Theor. Appl. Genet. 10: 3070-3081 (2008).

Hase Y, Fujioka S, Yoshida S, Sun G, Umeda M, Tanaka A. Ectopic endoreduplication caused by sterol alteration results in serrated petals in Arabidopsis. J. Exp. Bot. 56: 1263-1268 (2005).

Hase Y, Trung KH, Matsunaga T, Tanaka A. A mutation in the uvi4 gene promotes progression of endo-reduplication and confers increased tolerance towards ultraviolet B light. Plant J. 46: 317-326 (2006).

Hasegawa PM, Bressan RA, Zhu JK, Bohnert HJ. Plant cellular and molecular responses to high salinity. Annu. Rev. Plant Physiol. Plant Mol. Biol. 51: 463-499 (2000).

Hashida SN, Takahashi H, Kawai-Yamada M, Uchimiya H. Arabidopsis thaliana nicotinate/nicotinamide mononucleotide adenyltransferase (AtNMNAT) is required for pollen tube growth. Plant J. 49: 694-703 (2007).

Hashimoto K, Igarashi H, Mano S, Takenaka C, Shiina T, Yamaguchi M, Demura T, Nishimura M, Shimmen T, Yokota E. An isoform of Arabidopsis myosin XI interacts with small GTPases in its C-terminal tail region. J. Exp. Bot. 59: 3523-3531 (2008).

Hashimoto M, Endo T, Peltier G, Tasaka M, Shikanai T. A nucleus-encoded factor, CRR2, is essential for the expression of chloroplast ndhB in Arabidopsis. Plant J. 36: 541-549 (2003).

Hashimoto M, Negi J, Young J, Israelsson M, Schroeder JI, Iba K. Arabidopsis HT1 kinase controls stomatal movements in response to CO2. Nat. Cell Biol. 8: 391-397 (2006).

Hashimoto T, Tamaki K, Suzuki K, Yamada Y. Molecular cloning of plant spermidine synthases. Plant Cell Physiol. 39: 73-79 (1998).

Haslekas C, Grini PE, Nordgard SH, Thorstensen T, Viken MK, Nygaard V, Aalen RB. ABI3 mediates expression of the peroxiredoxin antioxidant AtPER1 gene and induction by oxidative stress. Plant Mol. Biol. 53: 313-326 (2003).

Haslekas C, Stacy RA, Nygaard V, Culianez-Macia FA, Aalen RB. The expression of a peroxiredoxin antioxidant gene, AtPer1, in Arabidopsis thaliana is seed-specific and related to dormancy. Plant Mol. Biol. 36: 833-845 (1998).

Haslekas C, Viken MK, Grini PE, Nygaard V, Nordgard SH, Meza TJ, Aalen RB. Seed 1-cysteine peroxiredoxin antioxidants are not involved in dormancy, but contribute to inhibition of germination during stress. Plant Physiol. 133: 1148-1157 (2003).

Hass C, Lohrmann J, Albrecht V, Sweere U, Hummel F, Yoo SD, Hwang I, Zhu T, Schafer E, Kudla J, Harter K. The response regulator 2 mediates ethylene signalling and hormone signal integration in Arabidopsis. EMBO J. 23: 3290-3302 (2004).

Hassidim M, Yakir E, Fradkin D, Hilman D, Kron I, Keren N, Harir Y, Yerushalmi S, Green RM. Mutations in CHLOROPLAST RNA BINDING provide evidence for the involvement of the chloroplast in the regulation of the circadian clock in Arabidopsis. Plant J. 51: 551-562 (2007).

Hassinen VH, Tervahauta AI, Halimaa P, Plessl M, Peraniemi S, Schat H, Aarts MG, Servomaa K, Karenlampi SO. Isolation of Zn-responsive genes from two accessions of the hyperaccumulator plant Thlaspi caerulescens. Planta 225: 977-989 (2007).

Hassinen VH, Tuomainen M, Peraniemi S, Schat H, Karenlampi SO, Tervahauta AI. Metallothioneins 2 and 3 contribute to the metal-adapted phenotype but are not directly linked to Zn accumulation in the metal hyperaccumulator, Thlaspi caerulescens. J. Exp. Bot. 60: 187-196 (2009).

Hattori J, Rutledge R, Labbe H, Brown D, Sunohara G, Miki B. Multiple resistance to sulfonylureas and imidazolinones conferred by an acetohydroxyacid synthase gene with separate mutations for selective resistance. Mol. Gen. Genet. 232: 167-173 (1992).

Hatzfeld Y, Cathala N, Grignon C, Davidian JC. Effect of ATP sulfurylase overexpression in bright yellow 2 tobacco cells. Regulation of ATP sulfurylase and SO4(2-) transport activities. Plant Physiol. 116: 1307-1313 (1998).

Hatzfeld Y, Lee S, Lee M, Leustek T, Saito K. Functional characterization of a gene encoding a fourth ATP sulfurylase isoform from Arabidopsis thaliana. Gene 248: 51-58 (2000).

Hatzfeld Y, Maruyama A, Schmidt A, Noji M, Ishizawa K, Saito K. beta-Cyanoalanine synthase is a mitochondrial cysteine synthase-like protein in spinach and Arabidopsis. Plant Physiol. 123: 1163-1172 (2000).

Haughn G, Chaudhury A. Genetic analysis of seed coat development in Arabidopsis. Trends Plant Sci. 10: 472-477 (2005).

Hause B, Meyer K, Viitanen PV, Chapple C, Strack D. Immunolocalization of 1-O-sinapoylglucose:malate sinapoyltransferase in Arabidopsis thaliana. Planta 215: 26-32 (2002).

Hauser BA, Sun K, Oppenheimer DG, Sage TL. Changes in mitochondrial membrane potential and accumulation of reactive oxygen species precede ultrastructural changes during ovule abortion. Planta 223: 492-499 (2006).

Hausler RE, Blackwell RD, Lea PJ, Leegood RC. Control of photosynthesis in barley leaves with reduced activities of glutamine synthetase or glutamate synthase. 1. Plant characteristics and changes in nitrate, ammonium and amino acids. Planta 194: 406-417 (1994).

Hausler RE, Geimer S, Kunz HH, Schmitz J, Dormann P, Bell K, Hetfeld S, Guballa A, Flugge UI. Chlororespiration and grana hyperstacking - how an Arabidopsis thaliana double mutant can survive, which is defective in both starch biosynthesis and daily carbon export from chloroplasts (adg1-1/tpt-1). Plant Physiol. 149: 515-533 (2009).

Havaux M, Bonfils JP, Lutz C, Niyogi KK. Photodamage of the photosynthetic apparatus and its dependence on the leaf developmental stage in the npq1 Arabidopsis mutant deficient in the xanthophyll cycle enzyme violaxanthin de-epoxidase. Plant Physiol. 124: 273-284 (2000).

Havaux M, Eymery F, Porfirova S, Rey P, Dormann P. Vitamin E protects against photoinhibition and photooxidative stress in Arabidopsis thaliana. Plant Cell 17: 3451-3469 (2005).

Hawker NP, Bowman JL. Roles for class III HD-Zip and KANADI genes in Arabidopsis root development. Plant Physiol. 135: 2261-2270 (2004).

Hay A, Jackson D, Ori N, Hake S. Analysis of the competence to respond to KNOTTED1 activity in Arabidopsis leaves using a steroid induction system. Plant Physiol. 131: 1671-1680 (2003).

Hay FR, Mead A, Manger K, Wilson FJ. One-step analysis of seed storage data and the longevity of Arabidopsis thaliana seeds. J. Exp. Bot. 54: 993-1011 (2003).

Hayama R, Coupland G. The molecular basis of diversity in the photoperiodic flowering responses of Arabidopsis and rice. Plant Physiol. 135: 677-684 (2004).

Hayashi F, Ichino T, Osanai M, Wada K. Oscillation and regulation of proline content by P5CS and ProDH gene expressions in the light/dark cycles in Arabidopsis thaliana L. Plant Cell Physiol. 41: 1096-1101 (2000).

Hayashi H, Alia, Mustardy L, Deshnium P, Ida M, Murata N. Transformation of Arabidopsis thaliana with the codA gene for choline oxidase; accumulation of glycinebetaine and enhanced tolerance to salt and cold stress. Plant J. 12: 133-142 (1997).

Hayashi H, Alia, Sakamoto A, Nonaka H, Chen THH, Murata N. Enhanced germination under high-salt conditions of seeds of transgenic Arabidopsis with a bacterial gene (codA) for choline oxidase. J. Plant Res. 111: 357-362 (1998).

Hayashi H, De Bellis L, Hayashi Y, Nito K, Kato A, Hayashi M, Hara-Nishimura I, Nishimura M. Molecular characterization of an Arabidopsis acyl-coenzyme A synthetase localized on glyoxysomal membranes. Plant Physiol. 130: 2019-2026 (2002).

Hayashi K, Kamio S, Oono Y, Townsend LB, Nozaki H. Toyocamycin specifically inhibits auxin signaling mediated by SCFTIR1 pathway. Phytochemistry 70: 190-197 (2009).

Hayashi M, Nishimura M. Entering a new era of research on plant peroxisomes. Curr. Opin. Plant Biol. 6: 577-582 (2003).

Hayashi M, Nito K, Takei-Hoshi R, Yagi M, Kondo M, Suenaga A, Yamaya T, Nishimura M. Ped3p is a peroxisomal ATP-binding cassette transporter that might supply substrates for fatty acid beta-oxidation. Plant Cell Physiol. 43: 1-11 (2002).

Hayashi M, Toriyama K, Kondo M, Nishimura M. 2,4-Dichlorophenoxybutyric acid-resistant mutants of Arabidopsis have defects in glyoxysomal fatty acid beta-oxidation. Plant Cell 10: 183-195 (1998).

Hayashi S, Ishii T, Matsunaga T, Tominaga R, Kuromori T, Wada T, Shinozaki K, Hirayama T. The glycerophosphoryl diester phosphodiesterase-like proteins SHV3 and its homologs play important roles in cell wall organization. Plant Cell Physiol. 49: 1522-1535 (2008).

Haydon MJ, Cobbett CS. A novel major facilitator superfamily protein at the tonoplast influences zinc tolerance and accumulation in Arabidopsis. Plant Physiol. 143: 1705-1719 (2007).

Hayes DE, Smith FA, Walker NA. High-affinity potassium transport into wheat roots involves sodium - a role for HKT1?. Aust. J. Plant Physiol. 28: 643-652 (2001).

Haywood V, Yu TS, Huang NC, Lucas WJ. Phloem long-distance trafficking of GIBBERELLIC ACID-INSENSITIVE RNA regulates leaf development. Plant J. 42: 49-68 (2005).

Hazen SP, Borevitz JO, Harmon FG, Pruneda-Paz JL, Schultz TF, Yanovsky MJ, Liljegren SJ, Ecker JR, Kay SA. Rapid array mapping of circadian clock and developmental mutations in Arabidopsis. Plant Physiol. 138: 990-997 (2005).

Hazen SP, Kay SA. Gene arrays are not just for measuring gene expression. Trends Plant Sci. 8: 413-416 (2003).

He C, Saedler H. Hormonal control of the inflated calyx syndrome, a morphological novelty, in Physalis. Plant J. 49: 935-946 (2007).

He C, Yan J, Shen G, Fu L, Holaday AS, Auld D, Blumwald E, Zhang H. Expression of an Arabidopsis vacuolar sodium/proton antiporter gene in cotton improves photosynthetic performance under salt conditions and increases fiber yield in the field. Plant Cell Physiol. 46: 1848-1854 (2005).

He G, Tarui Y, Iino M. A novel receptor kinase involved in jasmonate-mediated wound and phytochrome signaling in maize coleoptiles. Plant Cell Physiol. 46: 870-883 (2005).

He JX, Fujioka S, Li TC, Kang SG, Seto H, Takatsuto S, Yoshida S, Jang JC. Sterols regulate development and gene expression in Arabidopsis. Plant Physiol. 131: 1258-1269 (2003).

He P, Chintamanani S, Chen Z, Zhu L, Kunkel BN, Alfano JR, Tang X, Zhou JM. Activation of a COI1-dependent pathway in Arabidopsis by Pseudomonas syringae type III effectors and coronatine. Plant J. 37: 589-602 (2004).

He XJ, Mu RL, Cao WH, Zhang ZG, Zhang JS, Chen SY. AtNAC2, a transcription factor downstream of ethylene and auxin signaling pathways, is involved in salt stress response and lateral root development. Plant J. 44: 903-916 (2005).

He XZ, Dixon RA. Genetic manipulation of isoflavone 7-O-methyltransferase enhances biosynthesis of 4'-O-methylated isoflavonoid phytoalexins and disease resistance in alfalfa. Plant Cell 12: 1689-1702 (2000).

He Y, Fukushige H, Hildebrand DF, Gan S. Evidence supporting a role of jasmonic acid in Arabidopsis leaf senescence. Plant Physiol. 128: 876-884 (2002).

He Y, Gan S. A gene encoding an acyl hydrolase is involved in leaf senescence in Arabidopsis. Plant Cell 14: 805-815 (2002).

He Y, Gan S. Identical promoter elements are involved in regulation of the OPR1 gene by senescence and jasmonic acid in Arabidopsis. Plant Mol. Biol. 47: 595-605 (2001).

He Y, Gan S. A novel zinc-finger protein with a proline-rich domain mediates ABA-regulated seed dormancy in Arabidopsis. Plant Mol. Biol. 54: 1-9 (2004).

He Y, Li J. Differential expression of triplicate phosphoribosylanthranilate isomerase isogenes in the tryptophan biosynthetic pathway of Arabidopsis thaliana (L.) Heynh. Planta 212: 641-647 (2001).

He Y, Michaels SD, Amasino RM. Regulation of flowering time by histone acetylation in Arabidopsis. Science 302: 1751-1754 (2003).

He Y, Tang W, Swain JD, Green AL, Jack TP, Gan S. Networking senescence-regulating pathways by using Arabidopsis enhancer trap lines. Plant Physiol. 126: 707-716 (2001).

He YL, Liu XZ, Huang BR. Protein changes in response to heat stress in acclimated and nonacclimated creeping bentgrass. J. Am. Soc. Hortic. Sci. 130: 521-526 (2005).

He YW, Loh CS. Induction of early bolting in Arabidopsis thaliana by triacontanol, cerium and lanthanum is correlated with increased endogenous concentration of isopentenyl adenosine (iPAdos). J. Exp. Bot. 53: 505-512 (2002).

He Z, Li L, Luan S. Immunophilins and parvulins. Superfamily of peptidyl prolyl isomerases in Arabidopsis. Plant Physiol. 134: 1248-1267 (2004).

Heazlewood JL, Tonti-Filippini J, Verboom RE, Millar AH. Combining experimental and predicted datasets for determination of the subcellular location of proteins in Arabidopsis. Plant Physiol. 139: 598-609 (2005).

Heazlewood JL, Tonti-Filippini JS, Gout AM, Day DA, Whelan J, Millar AH. Experimental analysis of the Arabidopsis mitochondrial proteome highlights signaling and regulatory components, provides assessment of targeting prediction programs, and indicates plant-specific mitochondrial proteins. Plant Cell 16: 241-256 (2004).

Hecht V, Foucher F, Ferrandiz C, Macknight R, Navarro C, Morin J, Vardy ME, Ellis N, Beltran JP, Rameau C, Weller JL. Conservation of Arabidopsis flowering genes in model legumes. Plant Physiol. 137: 1420-1434 (2005).

Hecht V, Knowles CL, Vander Schoor JK, Liew LC, Jones SE, Lambert MJ, Weller JL. Pea LATE BLOOMER1 is a GIGANTEA ortholog with roles in photoperiodic flowering, deetiolation, and transcriptional regulation of circadian clock gene homologs. Plant Physiol. 144: 648-661 (2007).

Hecht V, Vielle-Calzada JP, Hartog MV, Schmidt ED, Boutilier K, Grossniklaus U, de Vries SC. The Arabidopsis SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 gene is expressed in developing ovules and embryos and enhances embryogenic competence in culture. Plant Physiol. 127: 803-816 (2001).

Heck S, Grau T, Buchala A, Metraux JP, Nawrath C. Genetic evidence that expression of NahG modifies defence pathways independent of salicylic acid biosynthesis in the Arabidopsis-Pseudomonas syringae pv. tomato interaction. Plant J. 36: 342-352 (2003).

Heckmann AB, Hebelstrup KH, Larsen K, Micaelo NM, Jensen EO. A single hemoglobin gene in Myrica gale retains both symbiotic and non-symbiotic specificity. Plant Mol. Biol. 61: 769-779 (2006).

Heddad M, Noren H, Reiser V, Dunaeva M, Andersson B, Adamska I. Differential expression and localization of early light-induced proteins in Arabidopsis thaliana. Plant Physiol. 142: 75-87 (2006).

Hefner E, Preuss SB, Britt AB. Arabidopsis mutants sensitive to gamma radiation include the homologue of the human repair gene ERCC1. J. Exp. Bot. 54: 669-680 (2003).

Hegedus D, Yu M, Baldwin D, Gruber M, Sharpe A, Parkin I, Whitwill S, Lydiate D. Molecular characterization of Brassica napus NAC domain transcriptional activators induced in response to biotic and abiotic stress. Plant Mol. Biol. 53: 383-397 (2003).

Hegeman CE, Hayes ML, Hanson MR. Substrate and cofactor requirements for RNA editing of chloroplast transcripts in Arabidopsis in vitro. Plant J. 42: 124-132 (2005).

Heiber I, Stroher E, Raatz B, Busse I, Kahmann U, Bevan MW, Dietz KJ, Baier M. The redox imbalanced mutants of Arabidopsis differentiate signaling pathways for redox regulation of chloroplast antioxidant enzymes. Plant Physiol. 143: 1774-1788 (2007).

Heilmann I, Mekhedov S, King B, Browse J, Shanklin J. Identification of the Arabidopsis palmitoyl-monogalactosyldiacylglycerol delta7-desaturase gene FAD5, and effects of plastidial retargeting of Arabidopsis desaturases on the fad5 mutant phenotype. Plant Physiol. 136: 4237-4245 (2004).

Heilmann I, Pidkowich MS, Girke T, Shanklin J. Switching desaturase enzyme specificity by alternate subcellular targeting. Proc. Natl. Acad. Sci. U.S.A. 101: 10266-10271 (2004).

Heimer YM, Brusslan JA, Kenigsbuch D, Tobin EM. A chimeric Lhcb::Nia gene: an inducible counter selection system for mutants in the phytochrome signal transduction pathway. Plant Mol. Biol. 27: 129-136 (1995).

Hein P, Stockel J, Bennewitz S, Oelmuller R. A protein related to prokaryotic UMP kinases is involved in psaA/B transcript accumulation in Arabidopsis. Plant Mol. Biol. 69: 517-528 (2009).

Heinemeyer J, Eubel H, Wehmhoner D, Jansch L, Braun HP. Proteomic approach to characterize the supramolecular organization of photosystems in higher plants. Phytochemistry 65: 1683-1692 (2004).

Heiss S, Wachter A, Bogs J, Cobbett C, Rausch T. Phytochelatin synthase (PCS) protein is induced in Brassica juncea leaves after prolonged Cd exposure. J. Exp. Bot. 54: 1833-1839 (2003).

Heitzeberg F, Chen IP, Hartung F, Orel N, Angelis KJ, Puchta H. The Rad17 homologue of Arabidopsis is involved in the regulation of DNA damage repair and homologous recombination. Plant J. 38: 954-968 (2004).

Helfer A, Clement B, Michler P, Otten L. The Agrobacterium oncogene AB-6b causes a graft-transmissible enation syndrome in tobacco. Plant Mol. Biol. 52: 483-493 (2003).

Hell R. Molecular physiology of plant sulfur metabolism. Planta 202: 138-148 (1997).

Hell R, Bork C, Bogdanova N, Frolov I, Hauschild R. Isolation and characterization of two cDNAs encoding for compartment specific isoforms of O-acetylserine (thiol) lyase from Arabidopsis thaliana. FEBS Lett. 351: 257-262 (1994).

Helliwell CA, Poole A, Peacock WJ, Dennis ES. Arabidopsis ent-kaurene oxidase catalyzes three steps of gibberellin biosynthesis. Plant Physiol. 119: 507-510 (1999).

Helliwell CA, Wood CC, Robertson M, James Peacock W, Dennis ES. The Arabidopsis FLC protein interacts directly in vivo with SOC1 and FT chromatin and is part of a high-molecular-weight protein complex. Plant J. 46: 183-192 (2006).

Hellmann H, Funck D, Rentsch D, Frommer WB. Hypersensitivity of an Arabidopsis sugar signaling mutant toward exogenous proline application. Plant Physiol. 122: 357-368 (2000).

Hellmann H, Funck D, Rentsch D, Frommer WB. Hypersensitivity of an Arabidopsis sugar signaling mutant toward exogenous proline application. Plant Physiol. 123: 779-790 (2000).

Hemm MR, Herrmann KM, Chapple C. AtMYB4: a transcription factor general in the battle against UV. Trends Plant Sci. 6: 135-136 (2001).

Hemm MR, Rider SD, Ogas J, Murry DJ, Chapple C. Light induces phenylpropanoid metabolism in Arabidopsis roots. Plant J. 38: 765-778 (2004).

Hemm MR, Ruegger MO, Chapple C. The Arabidopsis ref2 mutant is defective in the gene encoding CYP83A1 and shows both phenylpropanoid and glucosinolate phenotypes. Plant Cell 15: 179-194 (2003).

Hemmerlin A, Tritsch D, Hartmann M, Pacaud K, Hoeffler JF, van Dorsselaer A, Rohmer M, Bach TJ. A cytosolic Arabidopsis thaliana D-xylulose kinase catalyzes the phosphorylation of 1-deoxy-D-xylulose into a precursor of the plastidial isoprenoid pathway. Plant Physiol. 142: 441-457 (2006).

Hemsley PA, Kemp AC, Grierson CS. The TIP GROWTH DEFECTIVE1 S-acyl transferase regulates plant cell growth in Arabidopsis. Plant Cell 17: 2554-2563 (2005).

Henderson JT, Li HC, Rider SD, Mordhorst AP, Romero-Severson J, Cheng JC, Robey J, Sung ZR, de Vries SC, Ogas J. PICKLE acts throughout the plant to repress expression of embryonic traits and may play a role in gibberellin-dependent responses. Plant Physiol. 134: 995-1005 (2004).

Hendriks JH, Kolbe A, Gibon Y, Stitt M, Geigenberger P. ADP-glucose pyrophosphorylase is activated by posttranslational redox-modification in response to light and to sugars in leaves of Arabidopsis and other plant species. Plant Physiol. 133: 838-849 (2003).

Henikoff S, Till BJ, Comai L. TILLING. Traditional mutagenesis meets functional genomics. Plant Physiol. 135: 630-636 (2004).

Hennig L, Buche C, Eichenberg K, Schafer E. Dynamic properties of endogenous phytochrome A in Arabidopsis seedlings. Plant Physiol. 121: 571-578 (1999).

Hennig L, Gruissem W, Grossniklaus U, Kohler C. Transcriptional programs of early reproductive stages in Arabidopsis. Plant Physiol. 135: 1765-1775 (2004).

Hennig L, Menges M, Murray JA, Gruissem W. Arabidopsis transcript profiling on Affymetrix GeneChip arrays. Plant Mol. Biol. 53: 457-465 (2003).

Hennig L, Poppe C, Unger S, Schafer E. Control of hypocotyl elongation in Arabidopsis thaliana by photoreceptor interaction. Planta 208: 257-263 (1999).

Hennig L, Stoddart WM, Dieterle M, Whitelam GC, Schafer E. Phytochrome E controls light-induced germination of Arabidopsis. Plant Physiol. 128: 194-200 (2002).

Henquet M, Lehle L, Schreuder M, Rouwendal G, Molthoff J, Helsper J, van der Krol S, Bosch D. Identification of the gene encoding the alpha1,3-mannosyltransferase (ALG3) in Arabidopsis and characterization of downstream N-glycan processing. Plant Cell 20: 1652-1664 (2008).

Henriksson E, Henriksson KN. Salt-stress signalling and the role of calcium in the regulation of the Arabidopsis ATHB7 gene. Plant Cell Environ. 28: 202-210 (2005).

Henriksson E, Olsson AS, Johannesson H, Johansson H, Hanson J, Engstrom P, Soderman E. Homeodomain leucine zipper class I genes in Arabidopsis. Expression patterns and phylogenetic relationships. Plant Physiol. 139: 509-518 (2005).

Henriksson KN, Trewavas AJ. The effect of short-term low-temperature treatments on gene expression in Arabidopsis correlates with changes in intracellular Ca2+ levels. Plant Cell Environ. 26: 485-496 (2003).

Henrique R, Jasik J, Klein M, Martinoia E, Feller U, Schell J, Pais MS, Koncz C. Knock-out of Arabidopsis metal transporter gene IRT1 results in iron deficiency accompanied by cell differentiation defects. Plant Mol. Biol. 50: 587-597 (2002).

Henrissat B, Coutinho PM, Davies GJ. A census of carbohydrate-active enzymes in the genome of Arabidopsis thaliana. Plant Mol. Biol. 47: 55-72 (2001).

Henry IM, Dilkes BP, Comai L. Molecular karyotyping and aneuploidy detection in Arabidopsis thaliana using quantitative fluorescent polymerase chain reaction. Plant J. 48: 307-319 (2006).

Henry Y, Bedhomme M, Blanc G. History, protohistory and prehistory of the Arabidopsis thaliana chromosome complement. Trends Plant Sci. 11: 267-273 (2006).

Hensel LL, Nelson MA, Richmond TA, Bleecker AB. The fate of inflorescence meristems is controlled by developing fruits in Arabidopsis. Plant Physiol. 106: 863-876 (1994).

Henz SR, Cumbie JS, Kasschau KD, Lohmann JU, Carrington JC, Weigel D, Schmid M. Distinct expression patterns of natural antisense transcripts in Arabidopsis. Plant Physiol. 144: 1247-1255 (2007).

Hepworth SR, Klenz JE, Haughn GW. UFO in the Arabidopsis inflorescence apex is required for floral-meristem identity and bract suppression. Planta 223: 769-778 (2006).

Hepworth SR, Zhang Y, McKim S, Li X, Haughn GW. BLADE-ON-PETIOLE-dependent signaling controls leaf and floral patterning in Arabidopsis. Plant Cell 17: 1434-1448 (2005).

Herald VL, Heazlewood JL, Day DA, Millar AH. Proteomic identification of divalent metal cation binding proteins in plant mitochondria. FEBS Lett. 537: 96-100 (2003).

Heras B, Drobak BK. PARF-1: an Arabidopsis thaliana FYVE-domain protein displaying a novel eukaryotic domain structure and phosphoinositide affinity. J. Exp. Bot. 53: 565-567 (2002).

Heremans B, Jacobs M. A mutant of Arabidopsis thaliana (L.) Heynh. with modified control of aspartate kinase by threonine. Biochem. Genet. 35: 139-153 (1997).

Herman PL, Marks MD. Trichome development in Arabidopsis thaliana. II. Isolation and complementation of the GLABROUS1 gene. Plant Cell 1: 1051-1055 (1989).

Hermans C, Verbruggen N. Physiological characterization of Mg deficiency in Arabidopsis thaliana. J. Exp. Bot. 56: 2153-2161 (2005).

Hermon P, Srilunchang KO, Zou J, Dresselhaus T, Danilevskaya ON. Activation of the imprinted Polycomb Group Fie1 gene in maize endosperm requires demethylation of the maternal allele. Plant Mol. Biol. 64: 387-395 (2007).

Hernandez-Acosta P, Schmid DG, Jung G, Culianez-Macia FA, Kupke T. Molecular characterization of the Arabidopsis thaliana flavoprotein AtHAL3a reveals the general reaction mechanism of 4'-phosphopantothenoylcysteine decarboxylases. J. Biol. Chem. 277: 20490-20498 (2002).

Hernandez-Blanco C, Feng DX, Hu J, Sanchez-Vallet A, Deslandes L, Llorente F, Berrocal-Lobo M, Keller H, Barlet X, Sanchez-Rodriguez C, Anderson LK, Somerville S, Marco Y, Molina A. Impairment of cellulose synthases required for Arabidopsis secondary cell wall formation enhances disease resistance. Plant Cell 19: 890-903 (2007).

Hernandez-Pinzon I, Yelina NE, Schwach F, Studholme DJ, Baulcombe D, Dalmay T. SDE5, the putative homologue of a human mRNA export factor, is required for transgene silencing and accumulation of trans-acting endogenous siRNA. Plant J. 50: 140-148 (2007).

Herr AJ, Molnar A, Jones A, Baulcombe DC. Defective RNA processing enhances RNA silencing and influences flowering of Arabidopsis. Proc. Natl. Acad. Sci. U.S.A. 103: 14994-15001 (2006).

Hershey HP, Schwartz LJ, Gale JP, Abell LM. Cloning and functional expression of the small subunit of acetolactate synthase from Nicotiana plumbaginifolia. Plant Mol. Biol. 40: 795-806 (1999).

Hertel B, Horvath F, Wodala B, Hurst A, Moroni A, Thiel G. KAT1 inactivates at sub-millimolar concentrations of external potassium. J. Exp. Bot. 56: 3103-3110 (2005).

Hervieu F, Vaucheret H. A single amino acid change in acetolactate synthase confers resistance to valine in tobacco. Mol. Gen. Genet. 251: 220-224 (1996).

Heslop-Harrison JS, Murata M, Ogura Y, Schwarzacher T, Motoyoshi F. Polymorphisms and genomic organization of repetitive DNA from centromeric regions of Arabidopsis chromosomes. Plant Cell 11: 31-42 (1999).

Hesse H, Trachsel N, Suter M, Kopriva S, Von Ballmoos P, Rennenberg H, Brunold C. Effect of glucose on assimilatory sulphate reduction in Arabidopsis thaliana roots. J. Exp. Bot. 54: 1701-1709 (2003).

Hettinger JW, Mattozzi MP, Myers WR, Williams ME, Reeves A, Parsons RL, Haskell RC, Petersen DC, Wang R, Medford JI. Optical coherence microscopy. A technology for rapid, in vivo, non-destructive visualization of plants and plant cells. Plant Physiol. 123: 3-16 (2000).

Hetzl J, Foerster AM, Raidl G, Scheid OM. CyMATE: a new tool for methylation analysis of plant genomic DNA after bisulphite sequencing. Plant J. 51: 526-536 (2007).

Hewezi T, Howe P, Maier TR, Hussey RS, Mitchum MG, Davis EL, Baum TJ. Cellulose binding protein from the parasitic nematode Heterodera schachtii interacts with Arabidopsis pectin methylesterase: cooperative cell wall modification during parasitism. Plant Cell 20: 3080-3093 (2008).

Hewezi T, Petitprez M, Gentzbittel L. Primary metabolic pathways and signal transduction in sunflower (Helianthus annuus L.): comparison of transcriptional profiling in leaves and immature embryos using cDNA microarrays. Planta 223: 948-964 (2006).

Heyer AG, Raap M, Schroeer B, Marty B, Willmitzer L. Cell wall invertase expression at the apical meristem alters floral, architectural, and reproductive traits in Arabidopsis thaliana. Plant J. 39: 161-169 (2004).

Heyl A, Ramireddy E, Brenner WG, Riefler M, Allemeersch J, Schmulling T. The transcriptional repressor ARR1-SRDX suppresses pleiotropic cytokinin activities in Arabidopsis. Plant Physiol. 147: 1380-1395 (2008).

Heyl A, Schmulling T. Cytokinin signal perception and transduction. Curr. Opin. Plant Biol. 6: 480-488 (2003).

Hibara K, Karim MR, Takada S, Taoka KI, Furutani M, Aida M, Tasaka M. Arabidopsis CUP-SHAPED COTYLEDON3 regulates postembryonic shoot meristem and organ boundary formation. Plant Cell 18: 2946-2957 (2006).

Hibara K, Takada S, Tasaka M. CUC1 gene activates the expression of SAM-related genes to induce adventitious shoot formation. Plant J. 36: 687-696 (2003).

Hibberd JM, Jeschke WD. Solute flux into parasitic plants. J. Exp. Bot. 52: 2043-2049 (2001).

Hibi T, Kosugi S, Iwai T, Kawata M, Seo S, Mitsuhara I, Ohashi Y. Involvement of EIN3 homologues in basic PR gene expression and flower development in tobacco plants. J. Exp. Bot. 58: 3671-3678 (2007).

Hibino T, Waditee R, Araki E, Ishikawa H, Aoki K, Tanaka Y, Takabe T. Functional characterization of choline monooxygenase, an enzyme for betaine synthesis in plants. J. Biol. Chem. 277: 41352-41360 (2002).

Hicks GR, Rojo E, Hong S, Carter DG, Raikhel NV. Geminating pollen has tubular vacuoles, displays highly dynamic vacuole biogenesis, and requires VACUOLESS1 for proper function. Plant Physiol. 134: 1227-1239 (2004).

Hicks KA, Albertson TM, Wagner DR. Early flowering3 encodes a novel protein that regulates circadian clock function and flowering in Arabidopsis. Plant Cell 13: 1281-1292 (2001).

Hicks LM, Cahoon RE, Bonner ER, Rivard RS, Sheffield J, Jez JM. Thiol-based regulation of redox-active glutamate-cysteine ligase from Arabidopsis thaliana. Plant Cell 19: 2653-2661 (2007).

Hideg E, Nagy T, Oberschall A, Dudits D, Vass I. Detoxification function of aldose/aldehyde reductase during drought and ultraviolet-B (280-320 nm) stresses. Plant Cell Environ. 26: 513-522 (2003).

Hieber AD, Bugos RC, Verhoeven AS, Yamamoto HY. Overexpression of violaxanthin de-epoxidase: properties of C-terminal deletions on activity and pH-dependent lipid binding. Planta 214: 476-483 (2002).

Higashi Y, Hirai MY, Fujiwara T, Naito S, Noji M, Saito K. Proteomic and transcriptomic analysis of Arabidopsis seeds: molecular evidence for successive processing of seed proteins and its implication in the stress response to sulfur nutrition. Plant J. 48: 557-571 (2006).

Higgins JD, Buckling EF, Franklin FC, Jones GH. Expression and functional analysis of AtMUS81 in Arabidopsis meiosis reveals a role in the second pathway of crossing-over. Plant J. 54: 152-162 (2008).

Higgins JD, Vignard J, Mercier R, Pugh AG, Franklin FC, Jones GH. AtMSH5 partners AtMSH4 in the class I meiotic crossover pathway in Arabidopsis thaliana, but is not required for synapsis. Plant J. 55: 28-39 (2008).

Higginson T, Li SF, Parish RW. AtMYB103 regulates tapetum and trichome development in Arabidopsis thaliana. Plant J. 35: 177-192 (2003).

Hildebrandt U, Schmelzer E, Bothe H. Expression of nitrate transporter genes in tomato colonized by an arbuscular mycorrhizal fungus. Physiol. Plant. 115: 125-136 (2002).

Hillebrand H, Bartling D, Weiler EW. Structural analysis of the nit2/nit1/nit3 gene cluster encoding nitrilases, enzymes catalyzing the terminal activation step in indole-acetic acid biosynthesis in Arabidopsis thaliana. Plant Mol. Biol. 36: 89-99 (1998).

Hillebrand H, Tiemann B, Hell R, Bartling D, Weiler EW. Structure of the gene encoding nitrilase 1 from Arabidopsis thaliana. Gene 170: 197-200 (1996).

Hilson P, Small I, Kuiper MT. European consortia building integrated resources for Arabidopsis functional genomics. Curr. Opin. Plant Biol. 6: 426-429 (2003).

Hiltbrunner A, Grunig K, Alvarez-Huerta M, Infanger S, Bauer J, Kessler F. AtToc90, a new GTP-binding component of the Arabidopsis chloroplast protein import machinery. Plant Mol. Biol. 54: 427-440 (2004).

Hily JM, Liu Z. A simple and sensitive high-throughput GFP screening in woody and herbaceous plants. Plant Cell Rep. 28: 493-501 (2009).

Hily JM, Singer SD, Yang Y, Liu Z. A transformation booster sequence (TBS) from Petunia hybrida functions as an enhancer-blocking insulator in Arabidopsis thaliana. Plant Cell Rep. 28: 1095-1104 (2009).

Himanen K, Boucheron E, Vanneste S, De Almeida Engler J, Inze D, Beeckman T. Auxin-mediated cell cycle activation during early lateral root initiation. Plant Cell 14: 2339-2351 (2002).

Himanen K, Reuzeau C, Beeckman T, Melzer S, Grandjean O, Corben L, Inze D. The Arabidopsis locus RCB mediates upstream regulation of mitotic gene expression. Plant Physiol. 133: 1862-1872 (2003).

Himelblau E, Mira H, Lin SJ, Culotta VC, Penarrubia L, Amasino RM. Identification of a functional homolog of the yeast copper homeostasis gene ATX1 from Arabidopsis. Plant Physiol. 117: 1227-1234 (1998).

Himmelspach R, Williamson RE, Wasteneys GO. Cellulose microfibril alignment recovers from DCB-induced disruption despite microtubule disorganization. Plant J. 36: 565-575 (2003).

Hinderhofer K, Zentgraf U. Identification of a transcription factor specifically expressed at the onset of leaf senescence. Planta 213: 469-473 (2001).

Hinrichsen I, Bolle N, Paun L, Kempken F. RNA processing in plant mitochondria is independent of transcription. Plant Mol. Biol. 70: 663-668 (2009).

Hintz M, Bartholmes C, Nutt P, Ziermann J, Hameister S, Neuffer B, Theissen G. Catching a 'hopeful monster': shepherd's purse (Capsella bursa-pastoris) as a model system to study the evolution of flower development. J. Exp. Bot. 57: 3531-3542 (2006).

Hirai MY, Fujiwara T, Awazuhara M, Kimura T, Noji M, Saito K. Global expression profiling of sulfur-starved Arabidopsis by DNA macroarray reveals the role of O-acetyl-L-serine as a general regulator of gene expression in response to sulfur nutrition. Plant J. 33: 651-663 (2003).

Hirai MY, Saito K. Post-genomics approaches for the elucidation of plant adaptive mechanisms to sulphur deficiency. J. Exp. Bot. 55: 1871-1879 (2004).

Hirano H, Harashima H, Shinmyo A, Sekine M. Arabidopsis RETINOBLASTOMA-RELATED PROTEIN 1 is involved in G1 phase cell cycle arrest caused by sucrose starvation. Plant Mol. Biol. 66: 259-275 (2008).

Hirashima M, Tanaka R, Tanaka A. Light-independent cell death induced by accumulation of pheophorbide a in Arabidopsis thaliana. Plant Cell Physiol. 50: 719-729 (2009).

Hiratsu K, Matsui K, Koyama T, Ohme-Takagi M. Dominant repression of target genes by chimeric repressors that include the EAR motif, a repression domain, in Arabidopsis. Plant J. 34: 733-739 (2003).

Hirayama T, Kieber JJ, Hirayama N, Kogan M, Guzman P, Nourizadeh S, Alonso JM, Dailey WP, Dancis A, Ecker JR. RESPONSIVE-TO-ANTAGONIST1, a Menkes/Wilson disease-related copper transporter, is required for ethylene signaling in Arabidopsis. Cell 97: 383-393 (1999).

Hirayama T, Ohto C, Mizoguchi T, Shinozaki K. A gene encoding a phosphatidylinositol-specific phospholipase C is induced by dehydration and salt stress in Arabidopsis thaliana. Proc. Natl. Acad. Sci. U.S.A. 92: 3903-3907 (1995).

Hirner A, Ladwig F, Stransky H, Okumoto S, Keinath M, Harms A, Frommer WB, Koch W. Arabidopsis LHT1 is a high-affinity transporter for cellular amino acid uptake in both root epidermis and leaf mesophyll. Plant Cell 18: 1931-1946 (2006).

Hirose N, Takei K, Kuroha T, Kamada-Nobusada T, Hayashi H, Sakakibara H. Regulation of cytokinin biosynthesis, compartmentalization and translocation. J. Exp. Bot. 59: 75-83 (2008).

Hirsch J, Lefort V, Vankersschaver M, Boualem A, Lucas A, Thermes C, d'Aubenton-Carafa Y, Crespi M. Characterization of 43 non-protein-coding mRNA genes in Arabidopsis, including the MIR162a-derived transcripts. Plant Physiol. 140: 1192-1204 (2006).

Hirsch RE, Lewis BD, Spalding EP, Sussman MR. A role for the AKT1 potassium channel in plant nutrition. Science 280: 918-921 (1998).

Hirschi KD. Expression of Arabidopsis CAX1 in tobacco. Altered calcium homeostasis and increased stress sensitivity. Plant Cell 11: 2113-2122 (1999).

Hirschi KD. Insertional mutants: a foundation for assessing gene function. Trends Plant Sci. 8: 205-207 (2003).

Hirschi KD, Korenkov VD, Wilganowski NL, Wagner GJ. Expression of Arabidopsis CAX2 in tobacco. Altered metal accumulation and increased manganese tolerance. Plant Physiol. 124: 125-134 (2000).

Hirschi KD, Miranda ML, Wilganowski NL. Phenotypic changes in Arabidopsis caused by expression of a yeast vacuolar Ca2+/H+ antiporter. Plant Mol. Biol. 46: 57-65 (2001).

Hisamatsu T, King RW. The nature of floral signals in Arabidopsis. II. Roles for FLOWERING LOCUS T (FT) and gibberellin. J. Exp. Bot. 59: 3821-3829 (2008).

Hitz WD, Carlson TJ, Booth JR Jr, Kinney AJ, Stecca KL, Yadav NS. Cloning of a higher-plant plastid omega-6 fatty acid desaturase cDNA and its expression in a cyanobacterium. Plant Physiol. 105: 635-641 (1994).

Hiwatashi Y, Obara M, Sato Y, Fujita T, Murata T, Hasebe M. Kinesins are indispensable for interdigitation of phragmoplast microtubules in the moss Physcomitrella patens. Plant Cell 20: 3094-3106 (2008).

Hjellstrom M, Olsson ASB, Engstrom O, Soderman EM. Constitutive expression of the water deficit-inducible homeobox gene ATHB7 in transgenic Arabidopsis causes a suppression of stem elongation growth. Plant Cell Environ. 26: 1127-1136 (2003).

Hjorth E, Hadfi K, Zauner S, Maier UG. Unique genetic compartmentalization of the SUF system in cryptophytes and characterization of a SufD mutant in Arabidopsis thaliana. FEBS Lett. 579: 1129-1135 (2005).

Hmida-Sayari A, Gargouri-Bouzid R, Bidani A, Jaoua L, Savoure A, Jaoua S. Overexpression of Delta(1)-pyrroline-5-carboxylate synthetase increases proline production and confers salt tolerance in transgenic potato plants. Plant Sci. 169: 746-752 (2005).

Ho CL, Noji M, Saito K. Plastidic pathway of serine biosynthesis. Molecular cloning and expression of 3-phosphoserine phosphatase from Arabidopsis thaliana. J. Biol. Chem. 274: 11007-11012 (1999).

Ho CL, Noji M, Saito M, Saito K. Regulation of serine biosynthesis in Arabidopsis. Crucial role of plastidic 3-phosphoglycerate dehydrogenase in non-photosynthetic tissues. J. Biol. Chem. 274: 397-402 (1999).

Ho CL, Noji M, Saito M, Yamazaki M, Saito K. Molecular characterization of plastidic phosphoserine aminotransferase in serine biosynthesis from Arabidopsis. Plant J. 16: 443-452 (1998).

Ho CL, Saito K. Molecular biology of the plastidic phosphorylated serine biosynthetic pathway in Arabidopsis thaliana. Amino Acids 20: 243-259 (2001).

Ho LH, Giraud E, Lister R, Thirkettle-Watts D, Low J, Clifton R, Howell KA, Carrie C, Donald T, Whelan J. Characterization of the regulatory and expression context of an alternative oxidase gene provides insights into cyanide-insensitive respiration during growth and development. Plant Physiol. 143: 1519-1533 (2007).

Ho LH, Giraud E, Uggalla V, Lister R, Clifton R, Glen A, Thirkettle-Watts D, Van Aken O, Whelan J. Identification of regulatory pathways controlling gene expression of stress responsive mitochondrial proteins in Arabidopsis. Plant Physiol. 147: 1858-1873 (2008).

Hobbie LJ. Auxin and cell polarity: the emergence of AXR4. Trends Plant Sci. 11: 517-518 (2006).

Hobbs DH, Flintham JE, Hills MJ. Genetic control of storage oil synthesis in seeds of Arabidopsis. Plant Physiol. 136: 3341-3349 (2004).

Hochholdinger F, Guo L, Schnable PS. Cytoplasmic regulation of the accumulation of nuclear-encoded proteins in the mitochondrial proteome of maize. Plant J. 37: 199-208 (2004).

Hochholdinger F, Hoecker N. Towards the molecular basis of heterosis. Trends Plant Sci. 12: 427-432 (2007).

Hochholdinger F, Park WJ, Sauer M, Woll K. From weeds to crops: genetic analysis of root development in cereals. Trends Plant Sci. 9: 42-48 (2004).

Hoeberichts FA, ten Have A, Woltering EJ. A tomato metacaspase gene is upregulated during programmed cell death in Botrytis cinerea-infected leaves. Planta 217: 517-522 (2003).

Hoecker U, Toledo-Ortiz G, Bender J, Quail PH. The photomorphogenesis-related mutant red1 is defective in CYP83B1, a red light-induced gene encoding a cytochrome P450 required for normal auxin homeostasis. Planta 219: 195-200 (2004).

Hoecker U, Xu Y, Quail PH. SPA1: a new genetic locus involved in phytochrome A-specific signal transduction. Plant Cell 10: 19-33 (1998).

Hoefgen R, Nikiforova VJ. Metabolomics integrated with transcriptomics: assessing systems response to sulfur-deficiency stress. Physiol. Plant. 132: 190-198 (2008).

Hoekenga OA, Vision TJ, Shaff JE, Monforte AJ, Lee GP, Howell SH, Kochian LV. Identification and characterization of aluminum tolerance loci in Arabidopsis (Landsberg erecta x Columbia) by quantitative trait locus mapping. A physiologically simple but genetically complex trait. Plant Physiol. 132: 936-948 (2003).

Hofer J, Ellis N. Conservation and diversification of gene function in plant development. Curr. Opin. Plant Biol. 5: 56-61 (2002).

Hofer R, Briesen I, Beck M, Pinot F, Schreiber L, Franke R. The Arabidopsis cytochrome P450 CYP86A1 encodes a fatty acid omega-hydroxylase involved in suberin monomer biosynthesis. J. Exp. Bot. 59: 2347-2360 (2008).

Hoff T, Schnorr KM, Meyer C, Caboche M. Isolation of two Arabidopsis cDNAs involved in early steps of molybdenum cofactor biosynthesis by functional complementation of Escherichia coli mutants. J. Biol. Chem. 270: 6100-6107 (1995).

Hoffer PH, Christopher DA. Structure and blue-light-responsive transcription of a chloroplast psbD promoter from Arabidopsis thaliana. Plant Physiol. 115: 213-222 (1997).

Hoffmann L, Besseau S, Geoffroy P, Ritzenthaler C, Meyer D, Lapierre C, Pollet B, Legrand M. Silencing of hydroxycinnamoyl-coenzyme A shikimate/quinate hydroxycinnamoyltransferase affects phenylpropanoid biosynthesis. Plant Cell 16: 1446-1465 (2004).

Hoffmann M, Wagner M, Abbadi A, Fulda M, Feussner I. Metabolic engineering of omega 3-very long chain polyunsaturated fatty acid production by an exclusively acyl-CoA-dependent pathway. J. Biol. Chem. 283: 22352-22362 (2008).

Hofig KP, Moyle RL, Putterill J, Walter C. Expression analysis of four Pinus radiata male cone promoters in the heterologous host Arabidopsis. Planta 217: 858-867 (2003).

Hofius D, Hajirezaei MR, Geiger M, Tschiersch H, Melzer M, Sonnewald U. RNAi-mediated tocopherol deficiency impairs photoassimilate export in transgenic potato plants. Plant Physiol. 135: 1256-1268 (2004).

Hofius D, Sonnewald U. Vitamin E biosynthesis: biochemistry meets cell biology. Trends Plant Sci. 8: 6-8 (2003).

Hofmann C, Niehl A, Sambade A, Steinmetz A, Heinlein M. Inhibition of tobacco mosaic virus movement by expression of an actin-binding protein. Plant Physiol. 149: 1810-1823 (2009).

Hofmann E, Zerbe P, Schaller F. The crystal structure of Arabidopsis thaliana allene oxide cyclase: insights into the oxylipin cyclization reaction. Plant Cell 18: 3201-3217 (2006).

Holding DR, Springer PS. The Arabidopsis gene PROLIFERA is required for proper cytokinesis during seed development. Planta 214: 373-382 (2002).

Holk A, Rietz S, Zahn M, Quader H, Scherer GF. Molecular identification of cytosolic, patatin-related phospholipases A from Arabidopsis with potential functions in plant signal transduction. Plant Physiol. 130: 90-101 (2002).

Holland N, Holland D, Helentjaris T, Dhugga KS, Xoconostle-Cazares B, Delmer DP. A comparative analysis of the plant cellulose synthase (CesA) gene family. Plant Physiol. 123: 1313-1324 (2000).

Holm M, Deng XW. Structural organization and interactions of COP1, a light-regulated developmental switch. Plant Mol. Biol. 41: 151-158 (1999).

Holmes-Davis R, Li G, Jamieson AC, Rebar EJ, Liu Q, Kong Y, Case CC, Gregory PD. Gene regulation in planta by plant-derived engineered zinc finger protein transcription factors. Plant Mol. Biol. 57: 411-423 (2005).

Holmstrom KO, Somersalo S, Mandal A, Palva TE, Welin B. Improved tolerance to salinity and low temperature in transgenic tobacco producing glycine betaine. J. Exp. Bot. 51: 177-185 (2000).

Holmstrom KO, Welin B, Mandal A, Kristiansdottir I, Teeri TH, Lamark T, Strom AR, Palva ET. Production of the Escherichia coli betaine-aldehyde dehydrogenase, an enzyme required for the synthesis of the osmoprotectant glycine betaine, in transgenic plants. Plant J. 6: 749-758 (1994).

Holtorf S, Ludwig-Muller J, Apel K, Bohlmann H. High-level expression of a viscotoxin in Arabidopsis thaliana gives enhanced resistance against Plasmodiophora brassicae. Plant Mol. Biol. 36: 673-680 (1998).

Holub EB. Evolution of parasitic symbioses between plants and filamentous microorganisms. Curr. Opin. Plant Biol. 9: 397-405 (2006).

Holub EB, Cooper A. Matrix, reinvention in plants: how genetics is unveiling secrets of non-host disease resistance. Trends Plant Sci. 9: 211-214 (2004).

Holweg C, Nick P. Arabidopsis myosin XI mutant is defective in organelle movement and polar auxin transport. Proc. Natl. Acad. Sci. U.S.A. 101: 10488-10493 (2004).

Holzl G, Witt S, Gaude N, Melzer M, Schottler MA, Dormann P. The role of diglycosyl lipids in photosynthesis and membrane lipid homeostasis in Arabidopsis. Plant Physiol. 150: 1147-1159 (2009).

Honda I, Turuspekov Y, Komatsuda T, Watanabe Y. Morphological and physiological analysis of cleistogamy in barley (Hordeum vulgare). Physiol. Plant. 124: 524-531 (2005).

Honda M, Muramoto Y, Kuzuguchi T, Sawano S, Machida M, Koyama H. Determination of gene copy number and genotype of transgenic Arabidopsis thaliana by competitive PCR. J. Exp. Bot. 53: 1515-1520 (2002).

Hong B, Ichida A, Wang Y, Gens JS, Pickard BG, Harper JF. Identification of a calmodulin-regulated Ca2+-ATPase in the endoplasmic reticulum. Plant Physiol. 119: 1165-1176 (1999).

Hong JK, Choi DS, Kim SH, Yi SY, Kim YJ, Hwang BK. Distinct roles of the pepper pathogen-induced membrane protein gene CaPIMP1 in bacterial disease resistance and oomycete disease susceptibility. Planta 228: 485-497 (2008).

Hong JK, Hwang BK. Promoter activation of pepper class II basic chitinase gene, CAChi2, and enhanced bacterial disease resistance and osmotic stress tolerance in the CAChi2-overexpressing Arabidopsis. Planta 223: 433-448 (2006).

Hong JK, Hwang BK. Induction of enhanced disease resistance and oxidative stress tolerance by overexpression of pepper basic PR-1 gene in Arabidopsis. Physiol. Plant. 124: 267-277 (2005).

Hong JK, Hwang BK. The promoter of the pepper pathogen-induced membrane protein gene CaPIMP1 mediates environmental stress responses in plants. Planta 229: 249-259 (2009).

Hong JP, Kim WT. Isolation and functional characterization of the Ca-DREBLP1 gene encoding a dehydration-responsive element binding-factor-like protein 1 in hot pepper (Capsicum annuum L. cv. Pukang). Planta 220: 875-888 (2005).

Hong RL, Hamaguchi L, Busch MA, Weigel D. Regulatory elements of the floral homeotic gene AGAMOUS identified by phylogenetic footprinting and shadowing. Plant Cell 15: 1296-1309 (2003).

Hong SB, Peebles CA, Shanks JV, San KY, Gibson SI. Expression of the Arabidopsis feedback-insensitive anthranilate synthase holoenzyme and tryptophan decarboxylase genes in Catharanthus roseus hairy roots. J. Biotechnol. 122: 28-38 (2006).

Hong SH, Kim HJ, Ryu JS, Choi H, Jeong S, Shin J, Choi G, Nam HG. CRY1 inhibits COP1-mediated degradation of BIT1, a MYB transcription factor, to activate blue light-dependent gene expression in Arabidopsis. Plant J. 55: 361-371 (2008).

Hong SW, Jon JH, Kwak JM, Nam HG. Identification of a receptor-like protein kinase gene rapidly induced by abscisic acid, dehydration, high salt, and cold treatments in Arabidopsis thaliana. Plant Physiol. 113: 1203-1212 (1997).

Hong SW, Lee U, Vierling E. Arabidopsis hot mutants define multiple functions required for acclimation to high temperatures. Plant Physiol. 132: 757-767 (2003).

Hong SW, Vierling E. Hsp101 is necessary for heat tolerance but dispensable for development and germination in the absence of stress. Plant J. 27: 25-35 (2001).

Hong Y, Devaiah SP, Bahn SC, Thamasandra BN, Li M, Welti R, Wang X. Phospholipase D epsilon and phosphatidic acid enhance Arabidopsis nitrogen signaling and growth. Plant J. 58: 376-387 (2009).

Hong Z, Bednarek SY, Blumwald E, Hwang I, Jurgens G, Menzel D, Osteryoung KW, Raikhel NV, Shinozaki K, Tsutsumi N, Verma DP. A unified nomenclature for Arabidopsis dynamin-related large GTPases based on homology and possible functions. Plant Mol. Biol. 53: 261-265 (2003).

Hong Z, Geisler-Lee CJ, Zhang Z, Verma DP. Phragmoplastin dynamics: multiple forms, microtubule association and their roles in cell plate formation in plants. Plant Mol. Biol. 53: 297-312 (2003).

Hong Z, Jin H, Tzfira T, Li J. Multiple mechanism-mediated retention of a defective brassinosteroid receptor in the endoplasmic reticulum of Arabidopsis. Plant Cell 20: 3418-3429 (2008).

Hong Z, Ueguchi-Tanaka M, Fujioka S, Takatsuto S, Yoshida S, Hasegawa Y, Ashikari M, Kitano H, Matsuoka M. The rice brassinosteroid-deficient dwarf2 mutant, defective in the rice homolog of Arabidopsis DIMINUTO/DWARF1, is rescued by the endogenously accumulated alternative bioactive brassinosteroid, dolichosterone. Plant Cell 17: 2243-2254 (2005).

Honys D, Twell D. Comparative analysis of the Arabidopsis pollen transcriptome. Plant Physiol. 132: 640-652 (2003).

Hooker TS, Lam P, Zheng H, Kunst L. A core subunit of the RNA-processing/degrading exosome specifically influences cuticular wax biosynthesis in Arabidopsis. Plant Cell 19: 904-913 (2007).

Hooker TS, Millar AA, Kunst L. Significance of the expression of the CER6 condensing enzyme for cuticular wax production in Arabidopsis. Plant Physiol. 129: 1568-1580 (2002).

Hooks MA, Fleming Y, Larson TR, Graham IA. No induction of beta-oxidation in leaves of Arabidopsis that over-produce lauric acid. Planta 207: 385-392 (1999).

Hooley R. Plant hormone perception and action: a role for G-protein signal transduction? Philos. Trans. R. Soc. Lond. B. Biol. Sci. 353: 1425-1430 (1998).

Hopkins MT, Lampi Y, Wang TW, Liu Z, Thompson JE. eIF5A is involved in pathogen-induced cell death and development of disease symptoms in Arabidopsis thaliana. Plant Physiol. 148: 479-489 (2008).

Horan K, Lauricha J, Bailey-Serres J, Raikhel N, Girke T. Genome cluster database. A sequence family analysis platform for Arabidopsis and rice. Plant Physiol. 138: 47-54 (2005).

Hord CL, Chen C, Deyoung BJ, Clark SE, Ma H. The BAM1/BAM2 receptor-like kinases are important regulators of Arabidopsis early anther development. Plant Cell 18: 1667-1680 (2006).

Horemans N, Raeymaekers T, Van Beek K, Nowocin A, Blust R, Broos K, Cuypers A, Vangronsveld J, Guisez Y. Dehydroascorbate uptake is impaired in the early response of Arabidopsis plant cell cultures to cadmium. J. Exp. Bot. 58: 4307-4317 (2007).

Hori K, Watanabe Y. UPF3 suppresses aberrant spliced mRNA in Arabidopsis. Plant J. 43: 530-540 (2005).

Horigome A, Nagasawa N, Ikeda K, Ito M, Itoh J, Nagato Y. Rice open beak is a negative regulator of class 1 knox genes and a positive regulator of class B floral homeotic gene. Plant J. 58: 724-736 (2009).

Horiguchi G, Fujikura U, Ferjani A, Ishikawa N, Tsukaya H. Large-scale histological analysis of leaf mutants using two simple leaf observation methods: identification of novel genetic pathways governing the size and shape of leaves. Plant J. 48: 638-644 (2006).

Horiguchi G, Fuse T, Kawakami N, Kodama H, Iba K. Temperature-dependent translational regulation of the ER w-3 fatty acid desaturase gene in wheat root tips. Plant J. 24: 805-813 (2000).

Horiguchi G, Kim GT, Tsukaya H. The transcription factor AtGRF5 and the transcription coactivator AN3 regulate cell proliferation in leaf primordia of Arabidopsis thaliana. Plant J. 43: 68-78 (2005).

Horiguchi G, Kodama H, Iba K. Mutations in a gene for plastid ribosomal protein S6-like protein reveal a novel developmental process required for the correct organization of lateral root meristem in Arabidopsis. Plant J. 33: 521-529 (2003).

Horio T, Oakley BR. Expression of Arabidopsis gamma-tubulin in fission yeast reveals conserved and novel functions of gamma-tubulin. Plant Physiol. 133: 1926-1934 (2003).

Horiuchi J, Badri DV, Kimball BA, Negre F, Dudareva N, Paschke MW, Vivanco JM. The floral volatile, methyl benzoate, from snapdragon (Antirrhinum majus) triggers phytotoxic effects in Arabidopsis thaliana. Planta 226: 1-10 (2007).

Horling F, Lamkemeyer P, Konig J, Finkemeier I, Kandlbinder A, Baier M, Dietz KJ. Divergent light-, ascorbate-, and oxidative stress-dependent regulation of expression of the peroxiredoxin gene family in Arabidopsis. Plant Physiol. 131: 317-325 (2003).

Horst I, Welham T, Kelly S, Kaneko T, Sato S, Tabata S, Parniske M, Wang TL. TILLING mutants of Lotus japonicus reveal that nitrogen assimilation and fixation can occur in the absence of nodule-enhanced sucrose synthase. Plant Physiol. 144: 806-820 (2007).

Hortensteiner S, Chinner J, Matile P, Thomas H, Donnison IS. Chlorophyll breakdown in Chlorella protothecoides: characterization of degreening and cloning of degreening-related genes. Plant Mol. Biol. 42: 439-450 (2000).

Horvath DP, McLarney BK, Thomashow MF. Regulation of Arabidopsis thaliana L. (Heyn) cor78 in response to low temperature. Plant Physiol. 103: 1047-1053 (1993).

Horvath DP, Schaffer R, West M, Wisman E. Arabidopsis microarrays identify conserved and differentially expressed genes involved in shoot growth and development from distantly related plant species. Plant J. 34: 125-134 (2003).

Hossain MM, Sultana F, Kubota M, Koyama H, Hyakumachi M. The plant growth-promoting fungus Penicillium simplicissimum GP17-2 induces resistance in Arabidopsis thaliana by activation of multiple defense signals. Plant Cell Physiol. 48: 1724-1736 (2007).

Hoth S, Schneidereit A, Lauterbach C, Scholz-Starke J, Sauer N. Nematode infection triggers the de novo formation of unloading phloem that allows macromolecular trafficking of green fluorescent protein into syncytia. Plant Physiol. 138: 383-392 (2005).

Hothorn M, Wachter A, Gromes R, Stuwe T, Rausch T, Scheffzek K. Structural basis for the redox control of plant glutamate cysteine ligase. J. Biol. Chem. 281: 27557-27565 (2006).

Hothorn M, Wolf S, Aloy P, Greiner S, Scheffzek K. Structural insights into the target specificity of plant invertase and pectin methylesterase inhibitory proteins. Plant Cell 16: 3437-3447 (2004).

Hou A, Liu K, Catawatcharakul N, Tang X, Nguyen V, Keller WA, Tsang EW, Cui Y. Two naturally occurring deletion mutants of 12S seed storage proteins in Arabidopsis thaliana. Planta 222: 512-520 (2005).

Hou CX, Dirk LM, Pattanaik S, Das NC, Maiti IB, Houtz RL, Williams MA. Plant peptide deformylase: a novel selectable marker and herbicide target based on essential cotranslational chloroplast protein processing. Plant Biotechnol. J. 5: 275-281 (2007).

Hou G, Kramer VL, Wang YS, Chen R, Perbal G, Gilroy S, Blancaflor EB. The promotion of gravitropism in Arabidopsis roots upon actin disruption is coupled with the extended alkalinization of the columella cytoplasm and a persistent lateral auxin gradient. Plant J. 39: 113-125 (2004).

Hou X, Hu WW, Shen L, Lee LY, Tao Z, Han JH, Yu H. Global identification of DELLA target genes during Arabidopsis flower development. Plant Physiol. 147: 1126-1142 (2008).

Hou X, Tong H, Selby J, Dewitt J, Peng X, He ZH. Involvement of a cell wall-associated kinase, WAKL4, in Arabidopsis mineral responses. Plant Physiol. 139: 1704-1716 (2005).

Hou XL, Wu P, Jiao FC, Jia QJ, Chen HM, Yu J, Song XW, Yi KK. Regulation of the expression of OsIPS1 and OsIPS2 in rice via systemic and local Pi signalling and hormones. Plant Cell Environ. 28: 353-364 (2005).

Houben A, Demidov D, Gernand D, Meister A, Leach CR, Schubert I. Methylation of histone H3 in euchromatin of plant chromosomes depends on basic nuclear DNA content. Plant J. 33: 967-973 (2003).

Houmiel KL, Slater S, Broyles D, Casagrande L, Colburn S, Gonzalez K, Mitsky TA, Reiser SE, Shah D, Taylor NB, Tran M, Valentin HE, Gruys KJ. Poly(beta-hydroxybutyrate) production in oilseed leukoplasts of Brassica napus. Planta 209: 547-550 (1999).

Houston NL, Fan C, Xiang JQ, Schulze JM, Jung R, Boston RS. Phylogenetic analyses identify 10 classes of the protein disulfide isomerase family in plants, including single-domain protein disulfide isomerase-related proteins. Plant Physiol. 137: 762-778 (2005).

Howarth JR, Dominguez-Solis JR, Gutierrez-Alcala G, Wray JL, Romero LC, Gotor C. The serine acetyltransferase gene family in Arabidopsis thaliana and the regulation of its expression by cadmium. Plant Mol. Biol. 51: 589-598 (2003).

Howden AJ, Harrison CJ, Preston GM. A conserved mechanism for nitrile metabolism in bacteria and plants. Plant J. 57: 243-253 (2009).

Howden R, Andersen CR, Goldsbrough PB, Cobbett CS. A cadmium-sensitive, glutathione-deficient mutant of Arabidopsis thaliana. Plant Physiol. 107: 1067-1073 (1995).

Howden R, Goldsbrough PB, Andersen CR, Cobbett CS. Cadmium-sensitive, cad1 mutants of Arabidopsis thaliana are phytochelatin deficient. Plant Physiol. 107: 1059-1066 (1995).

Howell MD, Fahlgren N, Chapman EJ, Cumbie JS, Sullivan CM, Givan SA, Kasschau KD, Carrington JC. Genome-wide analysis of the RNA-DEPENDENT RNA POLYMERASE6/DICER-LIKE4 pathway in Arabidopsis reveals dependency on miRNA- and tasiRNA-directed targeting. Plant Cell 19: 926-942 (2007).

Howles PA, Birch RJ, Collings DA, Gebbie LK, Hurley UA, Hocart CH, Arioli T, Williamson RE. A mutation in an Arabidopsis ribose 5-phosphate isomerase reduces cellulose synthesis and is rescued by exogenous uridine. Plant J. 48: 606-618 (2006).

Hoyerova K, Gaudinova A, Malbeck J, Dobrev PI, Kocabek T, Solcova B, Travnickova A, Kaminek M. Efficiency of different methods of extraction and purification of cytokinins. Phytochemistry 67: 1151-1159 (2006).

Hoyos ME, Palmieri L, Wertin T, Arrigoni R, Polacco JC, Palmieri F. Identification of a mitochondrial transporter for basic amino acids in Arabidopsis thaliana by functional reconstitution into liposomes and complementation in yeast. Plant J. 33: 1027-1035 (2003).

Hoyos ME, Zhang S. Calcium-independent activation of salicylic acid-induced protein kinase and a 40-kilodalton protein kinase by hyperosmotic stress. Plant Physiol. 122: 1355-1364 (2000).

Hrabak EM, Chan CW, Gribskov M, Harper JF, Choi JH, Halford N, Kudla J, Luan S, Nimmo HG, Sussman MR, Thomas M, Walker-Simmons K, Zhu JK, Harmon AC. The Arabidopsis CDPK-SnRK superfamily of protein kinases. Plant Physiol. 132: 666-680 (2003).

Hricova A, Quesada V, Micol JL. The SCABRA3 nuclear gene encodes the plastid RpoTp RNA polymerase, which is required for chloroplast biogenesis and mesophyll cell proliferation in Arabidopsis. Plant Physiol. 141: 942-956 (2006).

Hruba P, Honys D, Twell D, Capkova V, Tupy J. Expression of beta-galactosidase and beta-xylosidase genes during microspore and pollen development. Planta 220: 931-940 (2005).

Hsiao P, Sanjaya, Su RC, Teixeira da Silva JA, Chan MT. Plant native tryptophan synthase beta 1 gene is a non-antibiotic selection marker for plant transformation. Planta 225: 897-906 (2007).

Hsiao YY, Tsai WC, Kuoh CS, Huang TH, Wang HC, Wu TS, Leu YL, Chen WH, Chen HH. Comparison of transcripts in Phalaenopsis bellina and Phalaenopsis equestris (Orchidaceae) flowers to deduce monoterpene biosynthesis pathway. BMC Plant Biol. 6: 14 (2006).

Hsieh K, Huang AH. Tapetosomes in Brassica tapetum accumulate endoplasmic reticulum-derived flavonoids and alkanes for delivery to the pollen surface. Plant Cell 19: 582-596 (2007).

Hsieh MH, Chang CY, Hsu SJ, Chen JJ. Chloroplast localization of methylerythritol 4-phosphate pathway enzymes and regulation of mitochondrial genes in ispD and ispE albino mutants in Arabidopsis. Plant Mol. Biol. 66: 663-673 (2008).

Hsieh MH, Goodman HM. A novel gene family in Arabidopsis encoding putative heptahelical transmembrane proteins homologous to human adiponectin receptors and progestin receptors. J. Exp. Bot. 56: 3137-3147 (2005).

Hsieh MH, Goodman HM. The Arabidopsis IspH homolog is involved in the plastid nonmevalonate pathway of isoprenoid biosynthesis. Plant Physiol. 138: 641-653 (2005).

Hsieh MH, Goodman HM. Functional evidence for the involvement of Arabidopsis IspF homolog in the nonmevalonate pathway of plastid isoprenoid biosynthesis. Planta 223: 779-784 (2006).

Hsieh MH, Goodman HM. Molecular characterization of a novel gene family encoding ACT domain repeat proteins in Arabidopsis. Plant Physiol. 130: 1797-1806 (2002).

Hsieh MH, Lam HM, van de Loo FJ, Coruzzi G. A PII-like protein in Arabidopsis: putative role in nitrogen sensing. Proc. Natl. Acad. Sci. U.S.A. 95: 13965-13970 (1998).

Hsieh TF, Hakim O, Ohad N, Fischer RL. From flour to flower: how Polycomb group proteins influence multiple aspects of plant development. Trends Plant Sci. 8: 439-445 (2003).

Hsieh TH, Lee JT, Charng YY, Chan MT. Tomato plants ectopically expressing Arabidopsis CBF1 show enhanced resistance to water deficit stress. Plant Physiol. 130: 618-626 (2002).

Hsieh TH, Lee JT, Yang PT, Chiu LH, Charng YY, Wang YC, Chan MT. Heterology expression of the Arabidopsis C-repeat/dehydration response element binding factor 1 gene confers elevated tolerance to chilling and oxidative stresses in transgenic tomato. Plant Physiol. 129: 1086-1094 (2002).

Hsu CY, Liu Y, Luthe DS, Yuceer C. Poplar FT2 shortens the juvenile phase and promotes seasonal flowering. Plant Cell 18: 1846-1861 (2006).

Hu W, Ma H. Characterization of a novel putative zinc finger gene MIF1: involvement in multiple hormonal regulation of Arabidopsis development. Plant J. 45: 399-422 (2006).

Hu W, Wang Y, Bowers C, Ma H. Isolation, sequence analysis, and expression studies of florally expressed cDNAs in Arabidopsis. Plant Mol. Biol. 53: 545-563 (2003).

Hu X, Neill SJ, Yang Y, Cai W. Fungal elicitor Pep-25 increases cytosolic calcium ions, H2O2 production and activates the octadecanoid pathway in Arabidopsis thaliana. Planta 229: 1201-1208 (2009).

Hu X, Reddy AS. Cloning and expression of a PR5-like protein from Arabidopsis: inhibition of fungal growth by bacterially expressed protein. Plant Mol. Biol. 34: 949-959 (1997).

Hu Y, Poh HM, Chua NH. The Arabidopsis ARGOS-LIKE gene regulates cell expansion during organ growth. Plant J. 47: 1-9 (2006).

Hu Y, Xie Q, Chua NH. The Arabidopsis auxin-inducible gene ARGOS controls lateral organ size. Plant Cell 15: 1951-1961 (2003).

Hu Y, Zhong R, Morrison WH 3rd, Ye ZH. The Arabidopsis RHD3 gene is required for cell wall biosynthesis and actin organization. Planta 217: 912-921 (2003).

Hua J, Meyerowitz EM. Ethylene responses are negatively regulated by a receptor gene family in Arabidopsis thaliana. Cell 94: 261-271 (1998).

Hua J, Sakai H, Nourizadeh S, Chen QG, Bleecker AB, Ecker JR, Meyerowitz EM. EIN4 and ERS2 are members of the putative ethylene receptor gene family in Arabidopsis. Plant Cell 10: 1321-1332 (1998).

Hua X, van de Cotte B, Van Montagu M, Verbruggen N. A 69 bp fragment in the pyrroline-5-carboxylate reductase promoter of Arabidopsis thaliana activates minimal CaMV 35S promoter in a tissue-specific manner. FEBS Lett. 458: 193-196 (1999).

Hua XJ, van de Cotte B, Van Montagu M, Verbruggen N. Developmental regulation of pyrroline-5-carboxylate reductase gene expression in Arabidopsis. Plant Physiol. 114: 1215-1224 (1997).

Hua XJ, Van De Cotte B, Van Montagu M, Verbruggen N. The 5' untranslated region of the At-P5R gene is involved in both transcriptional and post-transcriptional regulation. Plant J. 26: 157-169 (2001).

Hua ZM, Yang X, Fromm ME. Activation of the NaCl- and drought-induced RD29A and RD29B promoters by constitutively active Arabidopsis MAPKK or MAPK proteins. Plant Cell Environ. 29: 1761-1770 (2006).

Huai J, Wang M, He J, Zheng J, Dong Z, Lv H, Zhao J, Wang G. Cloning and characterization of the SnRK2 gene family from Zea mays. Plant Cell Rep. 27: 1861-1868 (2008).

Huala E, Dickerman AW, Garcia-Hernandez M, Weems D, Reiser L, LaFond F, Hanley D, Kiphart D, Zhuang M, Huang W, Mueller LA, Bhattacharyya D, Bhaya D, Sobral BW, Beavis W, Meinke DW, Town CD, Somerville C, Rhee SY. The Arabidopsis Information Resource (TAIR): a comprehensive database and web-based information retrieval, analysis, and visualization system for a model plant. Nucleic Acids Res. 29: 102-105 (2001).

Huang C, He W, Guo J, Chang X, Su P, Zhang L. Increased sensitivity to salt stress in an ascorbate-deficient Arabidopsis mutant. J. Exp. Bot. 56: 3041-3049 (2005).

Huang D, Jaradat MR, Wu W, Ambrose SJ, Ross AR, Abrams SR, Cutler AJ. Structural analogs of ABA reveal novel features of ABA perception and signaling in Arabidopsis. Plant J. 50: 414-428 (2007).

Huang D, Wu W, Abrams SR, Cutler AJ. The relationship of drought-related gene expression in Arabidopsis thaliana to hormonal and environmental factors. J. Exp. Bot. 59: 2991-3007 (2008).

Huang DJ, Chen HJ, Hou WC, Chen TE, Hsu WY, Lin YH. Expression and function of a cysteine proteinase cDNA from sweet potato (Ipomoea batatas [L.] Lam 'Tainong 57') storage roots. Plant Sci. 169: 423-431 (2005).

Huang G, Allen R, Davis EL, Baum TJ, Hussey RS. Engineering broad root-knot resistance in transgenic plants by RNAi silencing of a conserved and essential root-knot nematode parasitism gene. Proc. Natl. Acad. Sci. U.S.A. 103: 14302-14306 (2006).

Huang J, Hirji R, Adam L, Rozwadowski KL, Hammerlindl JK, Keller WA, Selvaraj G. Genetic engineering of glycinebetaine production toward enhancing stress tolerance in plants: metabolic limitations. Plant Physiol. 122: 747-756 (2000).

Huang J, Rozwadowski K, Bhinu VS, Schafer U, Hannoufa A. Manipulation of sinapine, choline and betaine accumulation in Arabidopsis seed: towards improving the nutritional value of the meal and enhancing the seedling performance under environmental stresses in oilseed crops. Plant Physiol. Biochem. 46: 647-654 (2008).

Huang J, Taylor JP, Chen JG, Uhrig JF, Schnell DJ, Nakagawa T, Korth KL, Jones AM. The plastid protein THYLAKOID FORMATION1 and the plasma membrane G-protein GPA1 interact in a novel sugar-signaling mechanism in Arabidopsis. Plant Cell 18: 1226-1238 (2006).

Huang J, Zhao L, Yang Q, Xue Y. AhSSK1, a novel SKP1-like protein that interacts with the S-locus F-box protein SLF. Plant J. 46: 780-793 (2006).

Huang JG, Yang M, Liu P, Yang GD, Wu CA, Zheng CC. GhDREB1 enhances abiotic stress tolerance, delays GA-mediated development and represses cytokinin signalling in transgenic Arabidopsis. Plant Cell Environ. Apr 22 [Epub ahead of print] (2009).

Huang NC, Chiang CS, Crawford NM, Tsay YF. CHL1 encodes a component of the low-affinity nitrate uptake system in Arabidopsis and shows cell type-specific expression in roots. Plant Cell 8: 2183-2191 (1996).

Huang NC, Liu KH, Lo HJ, Tsay YF. Cloning and functional characterization of an Arabidopsis nitrate transporter gene that encodes a constitutive component of low-affinity uptake. Plant Cell 11: 1381-1392 (1999).

Huang NC, Yu TS. The sequences of Arabidopsis GA-INSENSITIVE RNA constitute the motifs that are necessary and sufficient for RNA long-distance trafficking. Plant J. 59: 921-929 (2009).

Huang QS, Wang HY, Gao P, Wang GY, Xia GX. Cloning and characterization of a calcium dependent protein kinase gene associated with cotton fiber development. Plant Cell Rep. 27: 1869-1875 (2008).

Huang S, Cerny RE, Bhat DS, Brown SM. Cloning of an Arabidopsis patatin-like gene, STURDY, by activation T-DNA tagging. Plant Physiol. 125: 573-584 (2001).

Huang S, Cerny RE, Qi Y, Bhat D, Aydt CM, Hanson DD, Malloy KP, Ness LA. Transgenic studies on the involvement of cytokinin and gibberellin in male development. Plant Physiol. 131: 1270-1282 (2003).

Huang S, Colmer TD, Millar AH. Does anoxia tolerance involve altering the energy currency towards PPi? Trends Plant Sci. 13: 221-227 (2008).

Huang S, McDowell JM, Weise MJ, Meagher RB. The Arabidopsis profilin gene family. Evidence for an ancient split between constitutive and pollen-specific profilin genes. Plant Physiol. 111: 115-126 (1996).

Huang S, Raman AS, Ream JE, Fujiwara H, Cerny RE, Brown SM. Overexpression of 20-oxidase confers a gibberellin-overproduction phenotype in Arabidopsis. Plant Physiol. 118: 773-781 (1998).

Huang S, Robinson RC, Gao LY, Matsumoto T, Brunet A, Blanchoin L, Staiger CJ. Arabidopsis VILLIN1 generates actin filament cables that are resistant to depolymerization. Plant Cell 17: 486-501 (2005).

Huang S, Taylor NL, Narsai R, Eubel H, Whelan J, Millar AH. Experimental analysis of the rice mitochondrial proteome, its biogenesis and heterogeneity. Plant Physiol. 149: 719-734 (2009).

Huang T, Bohlenius H, Eriksson S, Parcy F, Nilsson O. The mRNA of the Arabidopsis gene FT moves from leaf to shoot apex and induces flowering. Science 309: 1694-1696 (2005).

Huang T, Nicodemus J, Zarka DG, Thomashow MF, Wisniewski M, Duman JG. Expression of an insect (Dendroides canadensis) antifreeze protein in Arabidopsis thaliana results in a decrease in plant freezing temperature. Plant Mol. Biol. 50: 333-344 (2002).

Huang W, Ma X, Wang Q, Gao Y, Xue Y, Niu X, Yu G, Liu Y. Significant improvement of stress tolerance in tobacco plants by overexpressing a stress-responsive aldehyde dehydrogenase gene from maize (Zea mays). Plant Mol. Biol. 68: 451-463 (2008).

Huang W, Pi L, Liang W, Xu B, Wang H, Cai R, Huang H. The proteolytic function of the Arabidopsis 26S proteasome is required for specifying leaf adaxial identity. Plant Cell 18: 2479-2492 (2006).

Huang X, Stettmaier K, Michel C, Hutzler P, Mueller MJ, Durner J. Nitric oxide is induced by wounding and influences jasmonic acid signaling in Arabidopsis thaliana. Planta 218: 938-946 (2004).

Huang X, Von Rad U, Durner J. Nitric oxide induces transcriptional activation of the nitric oxide-tolerant alternative oxidase in Arabidopsis suspension cells. Planta 215: 914-923 (2002).

Huang X, Zhu W, Dai S, Gai S, Zheng G, Zheng C. The involvement of mitochondrial phosphate transporter in accelerating bud dormancy release during chilling treatment of tree peony (Paeonia suffruticosa). Planta 228: 545-552 (2008).

Huang Y, Baxter R, Smith BS, Partch CL, Colbert CL, Deisenhofer J. Crystal structure of cryptochrome 3 from Arabidopsis thaliana and its implications for photolyase activity. Proc. Natl. Acad. Sci. U.S.A. 103: 17701-17706 (2006).

Huang Y, Li H, Gupta R, Morris PC, Luan S, Kieber JJ. ATMPK4, an Arabidopsis homolog of mitogen-activated protein kinase, is activated in vitro by AtMEK1 through threonine phosphorylation. Plant Physiol. 122: 1301-1310 (2000).

Huang Y, Li H, Hutchison CE, Laskey J, Kieber JJ. Biochemical and functional analysis of CTR1, a protein kinase that negatively regulates ethylene signaling in Arabidopsis. Plant J. 33: 221-233 (2003).

Huang YS, Li HM. Arabidopsis CHLI2 can substitute for CHLI1. Plant Physiol. 150: 636-645 (2009).

Huang Z, Yeakley JM, Garcia EW, Holdridge JD, Fan JB, Whitham SA. Salicylic acid-dependent expression of host genes in compatible Arabidopsis-virus interactions. Plant Physiol. 137: 1147-1159 (2005).

Hubert DA, Tornero P, Belkhadir Y, Krishna P, Takahashi A, Shirasu K, Dangl JL. Cytosolic HSP90 associates with and modulates the Arabidopsis RPM1 disease resistance protein. EMBO J. 22: 5679-5689 (2003).

Hudgins JW, Ralph SG, Franceschi VR, Bohlmann J. Ethylene in induced conifer defense: cDNA cloning, protein expression, and cellular and subcellular localization of 1-aminocyclopropane-1-carboxylate oxidase in resin duct and phenolic parenchyma cells. Planta 224: 865-877 (2006).

Hudson AO, Singh BK, Leustek T, Gilvarg C. An L,L-diaminopimelate aminotransferase defines a novel variant of the lysine biosynthesis pathway in plants. Plant Physiol. 140: 292-301 (2006).

Hudson ME, Lisch DR, Quail PH. The FHY3 and FAR1 genes encode transposase-related proteins involved in regulation of gene expression by the phytochrome A-signaling pathway. Plant J. 34: 453-471 (2003).

Hudson ME, Quail PH. Identification of promoter motifs involved in the network of phytochrome A-regulated gene expression by combined analysis of genomic sequence and microarray data. Plant Physiol. 133: 1605-1616 (2003).

Huege J, Sulpice R, Gibon Y, Lisec J, Koehl K, Kopka J. GC-EI-TOF-MS analysis of in vivo carbon-partitioning into soluble metabolite pools of higher plants by monitoring isotope dilution after (13)CO(2) labelling. Phytochemistry 68: 2258-2272 (2007).

Huesgen PF, Schuhmann H, Adamska I. The family of Deg proteases in cyanobacteria and chloroplasts of higher plants. Physiol. Plant. 123: 413-420 (2005).

Hughes CA, Beard HS, Matthews BF. Molecular cloning and expression of two cDNAs encoding asparagine synthetase in soybean. Plant Mol. Biol. 33: 301-311 (1997).

Hughes CA, Gebhardt JS, Reuss A, Matthews BF. Identification and expression of a cDNA encoding cystathionine gamma-synthase in soybean. Plant Sci. 146: 69-79 (1999).

Hughes EH, Hong SB, Gibson SI, Shanks JV, San KY. Expression of a feedback-resistant anthranilate synthase in Catharanthus roseus hairy roots provides evidence for tight regulation of terpenoid indole alkaloid levels. Biotechnol. Bioeng. 86: 718-727 (2004).

Hughes EH, Hong SB, Gibson SI, Shanks JV, San KY. Metabolic engineering of the indole pathway in Catharanthus roseus hairy roots and increased accumulation of tryptamine and serpentine. Metab. Eng. 6: 268-276 (2004).

Hugouvieux V, Murata Y, Young JJ, Kwak JM, Mackesy DZ, Schroeder JI. Localization, ion channel regulation, and genetic interactions during abscisic acid signaling of the nuclear mRNA cap-binding protein, ABH1. Plant Physiol. 130: 1276-1287 (2002).

Huijser C, Kortstee A, Pego J, Weisbeek P, Wisman E, Smeekens S. The Arabidopsis SUCROSE UNCOUPLED-6 gene is identical to ABSCISIC ACID INSENSITIVE-4: involvement of abscisic acid in sugar responses. Plant J. 23: 577-585 (2000).

Hulskamp M, Kopczak SD, Horejsi TF, Kihl BK, Pruitt RE. Identification of genes required for pollen-stigma recognition in Arabidopsis thaliana. Plant J. 8: 703-714 (1995).

Hulskamp M, Schneitz K, Pruitt RE. Genetic evidence for a long-range activity that directs pollen tube guidance in Arabidopsis. Plant Cell 7: 57-64 (1995).

Hulzink RJ, Weerdesteyn H, Croes AF, Gerats T, Van Herpen MM, Van Helden J. In silico identification of putative regulatory sequence elements in the 5'-untranslated region of genes that are expressed during male gametogenesis. Plant Physiol. 132: 75-83 (2003).

Hummel I, El-Amrani A, Gouesbet G, Hennion F, Couee I. Involvement of polyamines in the interacting effects of low temperature and mineral supply on Pringlea antiscorbutica (Kerguelen cabbage) seedlings. J. Exp. Bot. 55: 1125-1134 (2004).

Hummel M, Rahmani F, Smeekens S, Hanson J. Sucrose-mediated translational control. Ann. Bot. (Lond.) 104: 1-7 (2009).

Humphrey TV, Richman AS, Menassa R, Brandle JE. Spatial organisation of four enzymes from Stevia rebaudiana that are involved in steviol glycoside synthesis. Plant Mol. Biol. 61: 47-62 (2006).

Humphreys JM, Hemm MR, Chapple C. New routes for lignin biosynthesis defined by biochemical characterization of recombinant ferulate 5-hydroxylase, a multifunctional cytochrome P450-dependent monooxygenase. Proc. Natl. Acad. Sci. U.S.A. 96: 10045-10050 (1999).

Hung WF, Chen LJ, Boldt R, Sun CW, Li HM. Characterization of Arabidopsis glutamine phosphoribosyl pyrophosphate amidotransferase-deficient mutants. Plant Physiol. 135: 1314-1323 (2004).

Hunt L, Holdsworth MJ, Gray JE. Nicotinamidase activity is important for germination. Plant J. 51: 341-351 (2007).

Hunt MD, Delaney TP, Dietrich RA, Weymann KB, Dangl JL, Ryals JA. Salicylate-independent lesion formation in Arabidopsis lsd mutants. Mol. Plant Microbe Interact. 10: 531-536 (1997).

Hunt PW, Watts RA, Trevaskis B, Llewelyn DJ, Burnell J, Dennis ES, Peacock WJ. Expression and evolution of functionally distinct haemoglobin genes in plants. Plant Mol. Biol. 47: 677-692 (2001).

Hunter CA, Aukerman MJ, Sun H, Fokina M, Poethig RS. PAUSED encodes the Arabidopsis exportin-t ortholog. Plant Physiol. 132: 2135-2143 (2003).

Huq E, Al-Sady B, Quail PH. Nuclear translocation of the photoreceptor phytochrome B is necessary for its biological function in seedling photomorphogenesis. Plant J. 35: 660-664 (2003).

Hurry V, Strand A, Furbank R, Stitt M. The role of inorganic phosphate in the development of freezing tolerance and the acclimatization of photosynthesis to low temperature is revealed by the pho mutants of Arabidopsis thaliana. Plant J. 24: 383-396 (2000).

Hurst AC, Meckel T, Tayefeh S, Thiel G, Homann U. Trafficking of the plant potassium inward rectifier KAT1 in guard cell protoplasts of Vicia faba. Plant J. 37: 391-397 (2004).

Hurtado L, Farrona S, Reyes JC. The putative SWI/SNF complex subunit BRAHMA activates flower homeotic genes in Arabidopsis thaliana. Plant Mol. Biol. 62: 291-304 (2006).

Hurth MA, Suh SJ, Kretzschmar T, Geis T, Bregante M, Gambale F, Martinoia E, Neuhaus HE. Impaired pH homeostasis in Arabidopsis lacking the vacuolar dicarboxylate transporter and analysis of carboxylic acid transport across the tonoplast. Plant Physiol. 137: 901-910 (2005).

Husebye H, Chadchawan S, Winge P, Thangstad OP, Bones AM. Guard cell- and phloem idioblast-specific expression of thioglucoside glucohydrolase 1 (myrosinase) in Arabidopsis. Plant Physiol. 128: 1180-1188 (2002).

Hussain A, Cao D, Cheng H, Wen Z, Peng J. Identification of the conserved serine/threonine residues important for gibberellin-sensitivity of Arabidopsis RGL2 protein. Plant J. 44: 88-99 (2005).

Hussain A, Cao D, Peng J. Identification of conserved tyrosine residues important for gibberellin sensitivity of Arabidopsis RGL2 protein. Planta 226: 475-483 (2007).

Hussain D, Haydon MJ, Wang Y, Wong E, Sherson SM, Young J, Camakaris J, Harper JF, Cobbett CS. P-type ATPase heavy metal transporters with roles in essential zinc homeostasis in Arabidopsis. Plant Cell 16: 1327-1339 (2004).

Husselstein T, Schaller H, Gachotte D, Benveniste P. Delta7-sterol-C5-desaturase: molecular characterization and functional expression of wild-type and mutant alleles. Plant Mol. Biol. 39: 891-906 (1999).

Husselstein-Muller T, Schaller H, Benveniste P. Molecular cloning and expression in yeast of 2,3-oxidosqualene-triterpenoid cyclases from Arabidopsis thaliana. Plant Mol. Biol. 45: 75-92 (2001).

Hutchings H, Stahmann KP, Roels S, Espeso EA, Timberlake WE, Arst HN, Tilburn J. the multiply-regulated GABA gene encoding the GABA permease of Aspergillus nidulans: a score of exons. Mol. Microbiol. 32: 557-568 (1999).

Hutchison CE, Kieber JJ. Cytokinin signaling in Arabidopsis. Plant Cell 14 Suppl.: 47S-59S (2002).

Hutchison CE, Li J, Argueso C, Gonzalez M, Lee E, Lewis MW, Maxwell BB, Perdue TD, Schaller GE, Alonso JM, Ecker JR, Kieber JJ. The Arabidopsis histidine phosphotransfer proteins are redundant positive regulators of cytokinin signaling. Plant Cell 18: 3073-3087 (2006).

Huve K, Bichele I, Tobias M, Niinemets U. Heat sensitivity of photosynthetic electron transport varies during the day due to changes in sugars and osmotic potential. Plant Cell Environ. 29: 212-228 (2006).

Huynh le N, Vantoai T, Streeter J, Banowetz G. Regulation of flooding tolerance of SAG12:ipt Arabidopsis plants by cytokinin. J. Exp. Bot. 56: 1397-1407 (2005).

Hwang CF, Lin Y, D'Souza T, Cheng CL. Sequences necessary for nitrate-dependent transcription of Arabidopsis nitrate reductase genes. Plant Physiol. 113: 853-862 (1997).

Hwang HH, Gelvin SB. Plant proteins that interact with VirB2, the Agrobacterium tumefaciens pilin protein, mediate plant transformation. Plant Cell 16: 3148-3167 (2004).

Hwang I, Chen HC, Sheen J. Two-component signal transduction pathways in Arabidopsis. Plant Physiol. 129: 500-515 (2002).

Hwang I, Harper JF, Liang F, Sze H. Calmodulin activation of an endoplasmic reticulum-located calcium pump involves an interaction with the N-terminal autoinhibitory domain. Plant Physiol. 122: 157-168 (2000).

Hwang YS, Bethke PC, Cheong YH, Chang HS, Zhu T, Jones RL. A gibberellin-regulated calcineurin B in rice localizes to the tonoplast and is implicated in vacuole function. Plant Physiol. 138: 1347-1358 (2005).

Hyun Y, Lee I. KIDARI, encoding a non-DNA binding bHLH protein, represses light signal transduction in Arabidopsis thaliana. Plant Mol. Biol. 61: 283-296 (2006).

Ibdah M, Chen YT, Wilkerson CG, Pichersky E. An aldehyde oxidase in developing seeds of Arabidopsis converts benzaldehyde to benzoic acid. Plant Physiol. 150: 416-423 (2009).

Ibdah M, Krins A, Seidlitz HK, Heller W, Strack D, Vogt T. Spectral dependence of flavonol and betacyanin accumulation in Mesembryanthemum crystallinum under enhanced ultraviolet radiation. Plant Cell Environ. 25: 1145-1154 (2002).

Ichida AM, Pei ZM, Baizabal-Aguirre VM, Turner KJ, Schroeder JI. Expression of a Cs(+)-resistant guard cell K+ channel confers Cs(+)-resistant, light-induced stomatal opening in transgenic Arabidopsis. Plant Cell 9: 1843-1857 (1997).

Ichida AM, Schroeder JI. Increased resistance to extracellular cation block by mutation of the pore domain of the Arabidopsis inward-rectifying K+ channel KAT1. J. Membr. Biol. 151: 53-62 (1996).

Ichikawa T, Nakazawa M, Kawashima M, Muto S, Gohda K, Suzuki K, Ishikawa A, Kobayashi H, Yoshizumi T, Tsumoto Y, Tsuhara Y, Iizumi H, Goto Y, Matsui M. Sequence database of 1172 T-DNA insertion sites in Arabidopsis activation-tagging lines that showed phenotypes in T1 generation. Plant J. 36: 421-429 (2003).

Ichimura K, Casais C, Peck SC, Shinozaki K, Shirasu K. MEKK1 is requried for MPK4 activation and regulates tissue specific and temperature dependent cell death in Arabidopsis. J. Biol. Chem. 281: 36969-36976 (2006).

Ichimura K, Mizoguchi T, Yoshida R, Yuasa T, Shinozaki K. Various abiotic stresses rapidly activate Arabidopsis MAP kinases ATMPK4 and ATMPK6. Plant J. 24: 655-665 (2000).

Ide Y, Nagasaki N, Tomioka R, Suito M, Kamiya T, Maeshima M. Molecular properties of a novel, hydrophilic cation-binding protein associated with the plasma membrane. J. Exp. Bot. 58: 1173-1183 (2007).

Igarashi D, Izumi Y, Dokiya Y, Totsuka K, Fukusaki E, Ohsumi C. Reproductive organs regulate leaf nitrogen metabolism mediated by cytokinin signal. Planta 229: 633-644 (2009).

Igarashi D, Miwa T, Seki M, Kobayashi M, Kato T, Tabata S, Shinozaki K, Ohsumi C. Identification of photorespiratory glutamate:glyoxylate aminotransferase (GGAT) gene in Arabidopsis. Plant J. 33: 975-987 (2003).

Igarashi M, Demura T, Fukuda H. Expression of the Zinnia TED3 promoter in developing tracheary elements of transgenic Arabidopsis. Plant Mol. Biol. 36: 917-927 (1998).

Igarashi Y, Yoshiba Y, Sanada Y, Yamaguchi-Shinozaki K, Wada K, Shinozaki K. Characterization of the gene for delta1-pyrroline-5-carboxylate synthetase and correlation between the expression of the gene and salt tolerance in Oryza sativa L. Plant Mol. Biol. 33: 857-865 (1997).

Igarashi Y, Yoshiba Y, Takeshita T, Nomura S, Otomo J, Yamaguchi-Shinozaki K, Shinozaki K. Molecular cloning and characterization of a cDNA encoding proline transporter in rice. Plant Cell Physiol. 41: 750-756 (2000).

Igari K, Endo S, Hibara K, Aida M, Sakakibara H, Kawasaki T, Tasaka M. Constitutive activation of a CC-NB-LRR protein alters morphogenesis through the cytokinin pathway in Arabidopsis. Plant J. 55: 14-27 (2008).

Igasaki T, Watanabe Y, Nishiguchi M, Kotoda N. The FLOWERING LOCUS T/TERMINAL FLOWER 1 family in Lombardy poplar. Plant Cell Physiol. 49: 291-300 (2008).

Ihalainen JA, Klimmek F, Ganeteg U, van Stokkum IH, van Grondelle R, Jansson S, Dekker JP. Excitation energy trapping in photosystem I complexes depleted in Lhca1 and Lhca4. FEBS Lett. 579: 4787-4791 (2005).

Ihnatowicz A, Pesaresi P, Leister D. The E subunit of photosystem I is not essential for linear electron flow and photoautotrophic growth in Arabidopsis thaliana. Planta 226: 889-895 (2007).

Ihnatowicz A, Pesaresi P, Varotto C, Richly E, Schneider A, Jahns P, Salamini F, Leister D. Mutants for photosystem I subunit D of Arabidopsis thaliana: effects on photosynthesis, photosystem I stability and expression of nuclear genes for chloroplast functions. Plant J. 37: 839-852 (2004).

Iino M, Nomura T, Tamaki Y, Yamada Y, Yoneyama K, Takeuchi Y, Mori M, Asami T, Nakano T, Yokota T. Progesterone: its occurrence in plants and involvement in plant growth. Phytochemistry 68: 1664-1673 (2007).

Ikeda K, Ito M, Nagasawa N, Kyozuka J, Nagato Y. Rice ABERRANT PANICLE ORGANIZATION 1, encoding an F-box protein, regulates meristem fate. Plant J. 51: 1030-1040 (2007).

Ikeda M, Ohme-Takagi M. A novel group of transcriptional repressors in Arabidopsis. Plant Cell Physiol. 50: 970-975 (2009).

Ikeda TM, Gray MW. Identification and characterization of T3/T7 bacteriophage-like RNA polymerase sequences in wheat. Plant Mol. Biol. 40: 567-578 (1999).

Ikeda-Iwai M, Satoh S, Kamada H. Establishment of a reproducible tissue culture system for the induction of Arabidopsis somatic embryos. J. Exp. Bot. 53: 1575-1580 (2002).

Ikeda-Iwai M, Umehara M, Satoh S, Kamada H. Stress-induced somatic embryogenesis in vegetative tissues of Arabidopsis thaliana. Plant J. 34: 107-114 (2003).

Ikeda-Kawakatsu K, Yasuno N, Oikawa T, Iida S, Nagato Y, Maekawa M, Kyozuka J. Expression level of ABERRANT PANICLE ORGANIZATION1 determines rice inflorescence form through control of cell proliferation in the meristem. Plant Physiol. 150: 736-747 (2009).

Ikka T, Kobayashi Y, Iuchi S, Sakurai N, Shibata D, Kobayashi M, Koyama H. Natural variation of Arabidopsis thaliana reveals that aluminum resistance and proton resistance are controlled by different genetic factors. Theor. Appl. Genet. 115: 709-719 (2007).

Ilgenfritz H, Bouyer D, Schnittger A, Mathur J, Kirik V, Schwab B, Chua NH, Jurgens G, Hulskamp M. The Arabidopsis STICHEL gene is a regulator of trichome branch number and encodes a novel protein. Plant Physiol. 131: 643-655 (2003).

Iliev EA, Xu W, Polisensky DH, Oh MH, Torisky RS, Clouse SD, Braam J. Transcriptional and posttranscriptional regulation of Arabidopsis TCH4 expression by diverse stimuli. Roles of cis regions and brassinosteroids. Plant Physiol. 130: 770-783 (2002).

Illes P, Schlicht M, Pavlovkin J, Lichtscheidl I, Baluska F, Ovecka M. Aluminium toxicity in plants: internalization of aluminium into cells of the transition zone in Arabidopsis root apices related to changes in plasma membrane potential, endosomal behaviour, and nitric oxide production. J. Exp. Bot. 57: 4201-4113 (2006).

Illingworth C, Mayer MJ, Elliott K, Hanfrey C, Walton NJ, Michael AJ. The diverse bacterial origins of the Arabidopsis polyamine biosynthetic pathway. FEBS Lett. 549: 26-30 (2003).

Imai A, Akiyama T, Kato T, Sato S, Tabata S, Yamamoto KT, Takahashi T. Spermine is not essential for survival of Arabidopsis. FEBS Lett. 556: 148-152 (2004).

Imai A, Komura M, Kawano E, Kuwashiro Y, Takahashi T. A semi-dominant mutation in a ribosomal protein L10 gene suppresses the dwarf phenotype of the acl5 mutant in Arabidopsis thaliana. Plant J. 56: 881-890 (2008).

Imai A, Matsuyama T, Hanzawa Y, Akiyama T, Tamaoki M, Saji H, Shirano Y, Kato T, Hayashi H, Shibata D, Tabata S, Komeda Y, Takahashi T. Spermidine synthase genes are essential for survival of Arabidopsis. Plant Physiol. 135: 1565-1573 (2004).

Imai KK, Ohashi Y, Tsuge T, Yoshizumi T, Matsui M, Oka A, Aoyama T. The A-type cyclin CYCA2;3 is a key regulator of ploidy levels in Arabidopsis endoreduplication. Plant Cell 18: 382-396 (2006).

Imaizumi T, Kay SA. Photoperiodic control of flowering: not only by coincidence. Trends Plant Sci. 11: 550-558 (2006).

Imamura A, Hanaki N, Umeda H, Nakamura A, Suzuki T, Ueguchi C, Mizuno T. Response regulators implicated in His-to-Asp phosphotransfer signaling in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A. 95: 2691-2696 (1998).

Imlau A, Truernit E, Sauer N. Cell-to-cell and long-distance trafficking of the green fluorescent protein in the phloem and symplastic unloading of the protein into sink tissues. Plant Cell 11: 309-322 (1999).

Imoto K, Yokoyama R, Nishitani K. Comprehensive approach to genes involved in cell wall modifications in Arabidopsis thaliana. Plant Mol. Biol. 58: 177-192 (2005).

Imsande J. Iron-sulfur clusters: Formation, perturbation, and physiological functions. Plant Physiol. Biochem. 37: 87-97 (1999).

Inaba K, Fujiwara T, Hayashi H, Chino M, Komeda Y, Naito S. Isolation of an Arabidopsis thaliana mutant, mto1, that overaccumulates soluble methionine. Temporal and spatial patterns of soluble methionine accumulation. Plant Physiol. 104: 881-887 (1994).

Inaba T, Alvarez-Huerta M, Li M, Bauer J, Ewers C, Kessler F, Schnell DJ. Arabidopsis tic110 is essential for the assembly and function of the protein import machinery of plastids. Plant Cell 17: 1482-1496 (2005).

Inada N, Wildermuth MC. Novel tissue preparation method and cell-specific marker for laser microdissection of Arabidopsis mature leaf. Planta 221: 9-16 (2005).

Inada S, Ohgishi M, Mayama T, Okada K, Sakai T. RPT2 is a signal transducer involved in phototropic response and stomatal opening by association with phototropin 1 in Arabidopsis thaliana. Plant Cell 16: 887-896 (2004).

Inagaki S, Suzuki T, Ohto MA, Urawa H, Horiuchi T, Nakamura K, Morikami A. Arabidopsis TEBICHI, with helicase and DNA polymerase domains, is required for regulated cell division and differentiation in meristems. Plant Cell 18: 879-892 (2006).

Inan G, Goto F, Jin JB, Rosado A, Koiwa H, Shi H, Hasegawa PM, Bressan RA, Maggio A, Li X. Isolation and characterization of shs1, a sugar-hypersensitive and ABA-insensitive mutant with multiple stress responses. Plant Mol. Biol. 65: 295-309 (2007).

Inan G, Zhang Q, Li P, Wang Z, Cao Z, Zhang H, Zhang C, Quist TM, Goodwin SM, Zhu J, Shi H, Damsz B, Charbaji T, Gong Q, Ma S, Fredricksen M, Galbraith DW, Jenks MA, Rhodes D, Hasegawa PM, Bohnert HJ, Joly RJ, Bressan RA, Zhu JK. Salt cress. A halophyte and cryophyte Arabidopsis relative model system and its applicability to molecular genetic analyses of growth and development of extremophiles. Plant Physiol. 135: 1718-1737 (2004).

Ingle RA, Mugford ST, Rees JD, Campbell MM, Smith JA. Constitutively high expression of the histidine biosynthetic pathway contributes to nickel tolerance in hyperaccumulator plants. Plant Cell 17: 2089-2106 (2005).

Innes RW. Genetic dissection of R gene signal transduction pathways. Curr. Opin. Plant Biol. 1: 299-304 (1998).

Inoue K, Noji M, Saito K. Determination of the sites required for the allosteric inhibition of serine acetyltransferase by L-cysteine in plants. Eur. J. Biochem. 266: 220-227 (1999).

Inoue K, Potter D. The chloroplastic protein translocation channel Toc75 and its paralog OEP80 represent two distinct protein families and are targeted to the chloroplastic outer envelope by different mechanisms. Plant J. 39: 354-365 (2004).

Inoue Y, Suzuki T, Hattori M, Yoshimoto K, Ohsumi Y, Moriyasu Y. AtATG genes, homologs of yeast autophagy genes, are involved in constitutive autophagy in Arabidopsis root tip cells. Plant Cell Physiol. 47: 1641-1652 (2006).

Intapruk C, Takano M, Shinmyo A. Nucleotide sequence of a new cDNA for peroxidase from Arabidopsis thaliana. Plant Physiol. 104: 285-286 (1994).

International Rice Genome Sequencing Project. The map-based sequence of the rice genome. Nature 436: 793-800 (2005).

Ioki M, Takahashi S, Nakajima N, Fujikura K, Tamaoki M, Saji H, Kubo A, Aono M, Kanna M, Ogawa D, Fukazawa J, Oda Y, Yoshida S, Watanabe M, Hasezawa S, Kondo N. An unidentified ultraviolet-B-specific photoreceptor mediates transcriptional activation of the cyclobutane pyrimidine dimer photolyase gene in plants. Planta 229: 25-36 (2008).

Iqbal M, Ashraf M. Changes in growth, photosynthetic capacity and ionic relations in spring wheat (Triticum aestivum L.) due to pre-sowing seed treatment with polyamines. Plant Growth Regul. 46: 19-30 (2005).

Irish VF. The Arabidopsis petal: a model for plant organogenesis. Trends Plant Sci. 13: 430-436 (2008).

Irish VF, Benfey PN. Beyond Arabidopsis. Translational biology meets evolutionary developmental biology. Plant Physiol. 135: 611-614 (2004).

Irish VF, Yamamoto YT. Conservation of floral homeotic gene function between Arabidopsis and Antirrhinum. Plant Cell 7: 1635-1644 (1995).

Irmler S, Schroder G, St-Pierre B, Crouch NP, Hotze M, Schmidt J, Strack D, Matern U, Schroder J. Indole alkaloid biosynthesis in Catharanthus roseus: new enzyme activities and identification of cytochrome P450 CYP72A1 as secologanin synthase. Plant J. 24: 797-804 (2000).

Ischebeck T, Stenzel I, Heilmann I. Type B phosphatidylinositol-4-phosphate 5-kinases mediate Arabidopsis and Nicotiana tabacum pollen tube growth by regulating apical pectin secretion. Plant Cell 20: 3312-3330 (2008).

Ishida H, Yoshimoto K, Izumi M, Reisen D, Yano Y, Makino A, Ohsumi Y, Hanson MR, Mae T. Mobilization of Rubisco and stromal-localized fluorescent proteins of chloroplasts to the vacuole by an ATG gene-dependent autophagic process. Plant Physiol. 148: 142-155 (2008).

Ishida K, Yamashino T, Yokoyama A, Mizuno T. Three type-B response regulators, ARR1, ARR10 and ARR12, play essential but redundant roles in cytokinin signal transduction throughout the life cycle of Arabidopsis thaliana. Plant Cell Physiol. 49: 47-57 (2008).

Ishida S, Takabayashi A, Ishikawa N, Hano Y, Endo T, Sato F. A novel nuclear-encoded protein, NDH-dependent cyclic electron flow 5, is essential for the accumulation of chloroplast NAD(P)H dehydrogenase complexes. Plant Cell Physiol. 50: 383-393 (2009).

Ishihara A, Asada Y, Takahashi Y, Yabe N, Komeda Y, Nishioka T, Miyagawa H, Wakasa K. Metabolic changes in Arabidopsis thaliana expressing the feedback-resistant anthranilate synthase alpha subunit gene OASA1D. Phytochemistry 67: 2349-2362 (2006).

Ishikawa H, Evans ML. Novel software for analysis of root gravitropism: comparative response patterns of Arabidopsis wild-type and axr1 seedlings. Plant Cell Environ. 20: 919-928 (1997).

Ishikawa M, Fujiwara M, Sonoike K, Sato N. Orthogenomics of photosynthetic organisms: bioinformatic and experimental analysis of chloroplast proteins of endosymbiont origin in Arabidopsis and their counterparts in Synechocystis. Plant Cell Physiol. 50: 773-788 (2009).

Ishikawa M, Kiba T, Chua NH. The Arabidopsis SPA1 gene is required for circadian clock function and photoperiodic flowering. Plant J. 46: 736-746 (2006).

Ishikawa N, Takabayashi A, Ishida S, Hano Y, Endo T, Sato F. NDF6: a thylakoid protein specific to terrestrial plants is essential for activity of chloroplastic NAD(P)H dehydrogenase in Arabidopsis. Plant Cell Physiol. 49: 1066-1073 (2008).

Ishikawa R, Tamaki S, Yokoi S, Inagaki N, Shinomura T, Takano M, Shimamoto K. Suppression of the floral activator Hd3a is the principal cause of the night break effect in rice. Plant Cell 17: 3326-3336 (2005).

Ishikawa T, Machida C, Yoshioka Y, Kitano H, Machida Y. The GLOBULAR ARREST1 gene, which is involved in the biosynthesis of folates, is essential for embryogenesis in Arabidopsis thaliana. Plant J. 33: 235-244 (2003).

Ishikawa T, Morimoto Y, Madhusudhan R, Sawa Y, Shibata H, Yabuta Y, Nishizawa A, Shigeoka S. Acclimation to diverse environmental stresses caused by a suppression of cytosolic ascorbate peroxidase in tobacco BY-2 cells. Plant Cell Physiol. 46: 1264-1271 (2005).

Ishitani M, Liu J, Halfter U, Kim CS, Shi W, Zhu JK. SOS3 function in plant salt tolerance requires N-myristoylation and calcium binding. Plant Cell 12: 1667-1678 (2000).

Ishitani M, Majumder AL, Bornhouser A, Michalowski CB, Jensen RG, Bohnert HJ. Coordinate transcriptional induction of myo-inositol metabolism during environmental stress. Plant J. 9: 537-548 (1996).

Ishitani M, Xiong L, Lee H, Stevenson B, Zhu JK. HOS1, a genetic locus involved in cold-responsive gene expression in Arabidopsis. Plant Cell 10: 1151-1161 (1998).

Ishitani M, Xiong L, Stevenson B, Zhu JK. Genetic analysis of osmotic and cold stress signal transduction in Arabidopsis: interactions and convergence of abscisic acid-dependent and abscisic acid-independent pathways. Plant Cell 9: 1935-1949 (1997).

Ishiyama K, Inoue E, Tabuchi M, Yamaya T, Takahashi H. Biochemical background and compartmentalized functions of cytosolic glutamine synthetase for active ammonium assimilation in rice roots. Plant Cell Physiol. 45: 1640-1647 (2004).

Ishiyama K, Inoue E, Watanabe-Takahashi A, Obara M, Yamaya T, Takahashi H. Kinetic properties and ammonium-dependent regulation of cytosolic isoenzymes of glutamine synthetase in Arabidopsis. J. Biol. Chem. 279: 16598-16605 (2004).

Ishiyama K, Inoue E, Yamaya T, Takahashi H. Gln-49 and Ser-174 residues play critical roles in determining the catalytic efficiencies of plant glutamine synthetase. Plant Cell Physiol. 47: 299-303 (2006).

Ishizaki K, Chiyoda S, Yamato KT, Kohchi T. Agrobacterium-mediated transformation of the haploid liverwort Marchantia polymorpha L., an emerging model for plant biology. Plant Cell Physiol. 49: 1084-1091 (2008).

Ishizaki K, Larson TR, Schauer N, Fernie AR, Graham IA, Leaver CJ. The critical role of Arabidopsis electron-transfer flavoprotein:ubiquinone oxidoreductase during dark-induced starvation. Plant Cell 17: 2587-2600 (2005).

Ishizaki K, Schauer N, Larson TR, Graham IA, Fernie AR, Leaver CJ. The mitochondrial electron transfer flavoprotein complex is essential for survival of Arabidopsis in extended darkness. Plant J. 47: 751-760 (2006).

Ishizaki T, Ohsumi C, Totsuka K, Igarashi D. Analysis of glutamate homeostasis by overexpression of Fd-GOGAT gene in Arabidopsis thaliana. Amino Acids May 26 [Epub ahead of print] (2009).

Ishizaki Y, Tsunoyama Y, Hatano K, Ando K, Kato K, Shinmyo A, Kobori M, Takeba G, Nakahira Y, Shiina T. A nuclear-encoded sigma factor, Arabidopsis SIG6, recognizes sigma-70 type chloroplast promoters and regulates early chloroplast development in cotyledons. Plant J. 42: 133-144 (2005).

Islam MA, Du H, Ning J, Ye H, Xiong L. Characterization of Glossy1-homologous genes in rice involved in leaf wax accumulation and drought resistance. Plant Mol. Biol. 70: 443-456 (2009).

Islam MS, Niwa Y, Takagi S. Light-dependent intracellular positioning of mitochondria in Arabidopsis thaliana mesophyll cells. Plant Cell Physiol. 50: 1032-1040 (2009).

Islas-Osuna MA, Silva-Moreno B, Caceres-Carrizosa N, Garcia-Robles JM, Sotelo-Mundo RR, Yepiz-Plascencia GM. Editing of the grapevine mitochondrial cytochrome b mRNA and molecular modeling of the protein. Biochimie 88: 431-435 (2006).

Ismond KP, Dolferus R, De Pauw M, Dennis ES, Good AG. Enhanced low oxygen survival in Arabidopsis through increased metabolic flux in the fermentative pathway. Plant Physiol. 132: 1292-1302 (2003).

Isono K, Niwa Y, Satoh K, Kobayashi H. Evidence for transcriptional regulation of plastid photosynthesis genes in Arabidopsis thaliana roots. Plant Physiol. 114: 623-630 (1997).

Ispolatov I, Doebeli M. Speciation due to hybrid necrosis in plant-pathogen models. Evolution Aug 6 [Epub ahead of print] (2009).

Israelsson M, Mellerowicz E, Chono M, Gullberg J, Moritz T. Cloning and overproduction of gibberellin 3-oxidase in hybrid aspen trees. Effects on gibberellin homeostasis and development. Plant Physiol. 135: 221-230 (2004).

Ito H, Gray WM. A gain-of-function mutation in the Arabidopsis pleiotropic drug resistance transporter PDR9 confers resistance to auxinic herbicides. Plant Physiol. 142: 63-74 (2006).

Ito M, Koike A, Koizumi N, Sano H. Methylated DNA-binding proteins from Arabidopsis. Plant Physiol. 133: 1747-1754 (2003).

Ito S, Kawamura H, Niwa Y, Nakamichi N, Yamashino T, Mizuno T. A genetic study of the Arabidopsis circadian clock with reference to the TIMING OF CAB EXPRESSION 1 (TOC1) gene. Plant Cell Physiol. 50: 290-303 (2009).

Ito S, Nakamichi N, Kiba T, Yamashino T, Mizuno T. Rhythmic and light-inducible appearance of clock-associated pseudo-response regulator protein PRR9 through programmed degradation in the dark in Arabidopsis thaliana. Plant Cell Physiol. 48: 1644-1651 (2007).

Ito S, Niwa Y, Nakamichi N, Kawamura H, Yamashino T, Mizuno T. Insight into missing genetic links between two evening-expressed pseudo-response regulator genes TOC1 and PRR5 in the circadian clock-controlled circuitry in Arabidopsis thaliana. Plant Cell Physiol. 49: 201-213 (2008).

Ito T, Motohashi R, Kuromori T, Mizukado S, Sakurai T, Kanahara H, Seki M, Shinozaki K. A new resource of locally transposed dissociation elements for screening gene-knockout lines in silico on the Arabidopsis genome. Plant Physiol. 129: 1695-1699 (2002).

Ito T, Shiraishi H, Okada K, Shimura Y. Two amidophosphoribosyltransferase genes of Arabidopsis thaliana expressed in different organs. Plant Mol. Biol. 26: 529-533 (1994).

Ito Y, Katsura K, Maruyama K, Taji T, Kobayashi M, Seki M, Shinozaki K, Yamaguchi-Shinozaki K. Functional analysis of rice DREB1/CBF-type transcription factors involved in cold-responsive gene expression in transgenic rice. Plant Cell Physiol. 47: 141-153 (2006).

Ito Y, Kitagawa M, Ihashi N, Yabe K, Kimbara J, Yasuda J, Ito H, Inakuma T, Hiroi S, Kasumi T. DNA-binding specificity, transcriptional activation potential, and the rin mutation effect for the tomato fruit-ripening regulator RIN. Plant J. 55: 212-223 (2008).

Itoh H, Matsuoka M, Steber CM. A role for the ubiquitin-26S-proteasome pathway in gibberellin signaling. Trends Plant Sci. 8: 492-497 (2003).

Itoh H, Tatsumi T, Sakamoto T, Otomo K, Toyomasu T, Kitano H, Ashikari M, Ichihara S, Matsuoka M. A rice semi-dwarf gene, Tan-Ginbozu (D35), encodes the gibberellin biosynthesis enzyme, ent-kaurene oxidase. Plant Mol. Biol. 54: 533-547 (2004).

Itoh J, Sato Y, Nagato Y, Matsuoka M. Formation, maintenance and function of the shoot apical meristem in rice. Plant Mol. Biol. 60: 827-842 (2006).

Itoh JI, Hibara KI, Sato Y, Nagato Y. Developmental role and auxin responsiveness of class III homeodomain leucine zipper gene family members in rice. Plant Physiol. 147: 1960-1975 (2008).

Itoh R, Fujiwara M, Nagata N, Yoshida S. A chloroplast protein homologous to the eubacterial topological specificity factor minE plays a role in chloroplast division. Plant Physiol. 127: 1644-1655 (2001).

Iturriaga G, Leyns L, Villegas A, Gharaibeh R, Salamini F, Bartels D. A family of novel myb-related genes from the resurrection plant Craterostigma plantagineum are specifically expressed in callus and roots in response to ABA or desiccation. Plant Mol. Biol. 32: 707-716 (1996).

Iuchi S, Kobayashi M, Taji T, Naramoto M, Seki M, Kato T, Tabata S, Kakubari Y, Yamaguchi-Shinozaki K, Shinozaki K. Regulation of drought tolerance by gene manipulation of 9-cis-epoxycarotenoid dioxygenase, a key enzyme in abscisic acid biosynthesis in Arabidopsis. Plant J. 27: 325-333 (2001).

Iuchi S, Suzuki H, Kim YC, Iuchi A, Kuromori T, Ueguchi-Tanaka M, Asami T, Yamaguchi I, Matsuoka M, Kobayashi M, Nakajima M. Multiple loss-of-function of Arabidopsis gibberellin receptor AtGID1s completely shuts down a gibberellin signal. Plant J. 50: 958-966 (2007).

Ivanchenko MG, Muday GK, Dubrovsky JG. Ethylene-auxin interactions regulate lateral root initiation and emergence in Arabidopsis thaliana. Plant J. 55: 335-347 (2008).

Ivashikina N, Deeken R, Ache P, Kranz E, Pommerrenig B, Sauer N, Hedrich R. Isolation of AtSUC2 promoter-GFP-marked companion cells for patch-clamp studies and expression profiling. Plant J. 36: 931-945 (2003).

Ivashikina N, Hedrich R. K+ currents through SV-type vacuolar channels are sensitive to elevated luminal sodium levels. Plant J. 41: 606-614 (2005).

Iwabuchi K, Sakai T, Takagi S. Blue light-dependent nuclear positioning in Arabidopsis thaliana leaf cells. Plant Cell Physiol. 48: 1291-1298 (2007).

Iwakawa H, Iwasaki M, Kojima S, Ueno Y, Soma T, Tanaka H, Semiarti E, Machida Y, Machida C. Expression of the ASYMMETRIC LEAVES2 gene in the adaxial domain of Arabidopsis leaves represses cell proliferation in this domain and is critical for the development of properly expanded leaves. Plant J. 51: 173-184 (2007).

Iwakawa H, Shinmyo A, Sekine M. Arabidopsis CDKA;1, a cdc2 homologue, controls proliferation of generative cells in male gametogenesis. Plant J. 45: 819-831 (2006).

Iwasaki M, Nitasaka E. The FEATHERED gene is required for polarity establishment in lateral organs especially flowers of the Japanese morning glory (Ipomoea nil). Plant Mol. Biol. 62: 913-925 (2006).

Iwasaki S, Takeda A, Motose H, Watanabe Y. Characterization of Arabidopsis decapping proteins AtDCP1 and AtDCP2, which are essential for post-embryonic development. FEBS Lett. 581: 2455-2459 (2007).

Iwasaki T, Yamaguchi-Shinozaki K, Shinozaki K. Identification of a cis-regulatory region of a gene in Arabidopsis thaliana whose induction by dehydration is mediated by abscisic acid and requires protein synthesis. Mol. Gen. Genet. 247: 391-398 (1995).

Iwata Y, Fedoroff NV, Koizumi N. Arabidopsis bZIP60 is a proteolysis-activated transcription factor involved in the endoplasmic reticulum stress response. Plant Cell 20: 3107-3121 (2008).

Iyer-Pascuzzi A, Simpson J, Herrera-Estrella L, Benfey PN. Functional genomics of root growth and development in Arabidopsis. Curr. Opin. Plant Biol. 12: 165-171 (2009).

Izawa T, Takahashi Y, Yano M. Comparative biology comes into bloom: genomic and genetic comparison of flowering pathways in rice and Arabidopsis. Curr. Opin. Plant Biol. 6: 113-120 (2003).

Izhaki A, Bowman JL. KANADI and class III HD-Zip gene families regulate embryo patterning and modulate auxin flow during embryogenesis in Arabidopsis. Plant Cell 19: 495-508 (2007).

Jabs T, Dietrich RA, Dangl JL. Initiation of runaway cell death in an Arabidopsis mutant by extracellular superoxide. Science 273: 1853-1856 (1996).

Jach G. Use of fluorescent proteins as reporters. Methods Mol. Biol. 323: 275-291 (2006).

Jackson JA, Jenkins GI. Extension-growth responses and expression of flavonoid biosynthesis genes in the Arabidopsis hy4 mutant. Planta 197: 233-239 (1995).

Jackson MW, Stinchcombe JR, Korves TM, Schmitt J. Costs and benefits of cold tolerance in transgenic Arabidopsis thaliana. Mol. Ecol. 13: 3609-3615 (2004).

Jackson RG, Kowalczyk M, Li Y, Higgins G, Ross J, Sandberg G, Bowles DJ. Over-expression of an Arabidopsis gene encoding a glucosyltransferase of indole-3-acetic acid: phenotypic characterisation of transgenic lines. Plant J. 32: 573-583 (2002).

Jackson RG, Lim EK, Li Y, Kowalczyk M, Sandberg G, Hoggett J, Ashford DA, Bowles DJ. Identification and biochemical characterization of an Arabidopsis indole-3-acetic acid glucosyltransferase. J. Biol. Chem. 276: 4350-4356 (2001).

Jackson SD, James PE, Carrera E, Prat S, Thomas B. Regulation of transcript levels of a potato gibberellin 20-oxidase gene by light and phytochrome B. Plant Physiol. 124: 423-430 (2000).

Jackson SD, Sonnewald U, Willmitzer L. Cloning and expression analysis of beta-isopropylmalate dehydrogenase from potato. Mol. Gen. Genet. 236: 309-314 (1993).

Jackson-Constan D, Keegstra K. Arabidopsis genes encoding components of the chloroplastic protein import apparatus. Plant Physiol. 125: 1567-1576 (2001).

Jacob Y, Mongkolsiriwatana C, Veley KM, Kim SY, Michaels SD. The nuclear pore protein AtTPR is required for RNA homeostasis, flowering time, and auxin signaling. Plant Physiol. 144: 1383-1390 (2007).

Jacobs AK, Lipka V, Burton RA, Panstruga R, Strizhov N, Schulze-Lefert P, Fincher GB. An Arabidopsis callose synthase, GSL5, is required for wound and papillary callose formation. Plant Cell 15: 2503-2513 (2003).

Jacobs J, Roe JL. SKS6, a multicopper oxidase-like gene, participates in cotyledon vascular patterning during Arabidopsis thaliana development. Planta 222: 652-666 (2005).

Jacquot JP, Rivera-Madrid R, Marinho P, Kollarova M, Le Marechal P, Miginiac-Maslow M, Meyer Y. Arabidopsis thaliana NAPHP thioredoxin reductase. cDNA characterization and expression of the recombinant protein in Escherichia coli. J. Mol. Biol. 235: 1357-1363 (1994).

Jaeger KE, Graf A, Wigge PA. The control of flowering in time and space. J. Exp. Bot. 57: 3415-3418 (2006).

Jagadeeswaran G, Raina S, Acharya BR, Maqbool SB, Mosher SL, Appel HM, Schultz JC, Klessig DF, Raina R. Arabidopsis GH3-LIKE DEFENSE GENE 1 is required for accumulation of salicylic acid, activation of defense responses and resistance to Pseudomonas syringae. Plant J. 51: 234-246 (2007).

Jagadeeswaran G, Saini A, Sunkar R. Biotic and abiotic stress down-regulate miR398 expression in Arabidopsis. Planta 229: 1009-1014 (2009).

Jager CE, Symons GM, Nomura T, Yamada Y, Smith JJ, Yamaguchi S, Kamiya Y, Weller JL, Yokota T, Reid JB. Characterization of two brassinosteroid C-6 oxidase genes in pea. Plant Physiol. 143: 1894-1904 (2007).

Jaglo KR, Kleff S, Amundsen KL, Zhang X, Haake V, Zhang JZ, Deits T, Thomashow MF. Components of the Arabidopsis C-repeat/dehydration-responsive element binding factor cold-response pathway are conserved in Brassica napus and other plant species. Plant Physiol. 127: 910-917 (2001).

Jaglo-Ottosen KR, Gilmour SJ, Zarka DG, Schabenberger O, Thomashow MF. Arabidopsis CBF1 overexpression induces COR genes and enhances freezing tolerance. Science 280: 104-106 (1998).

Jaillais Y, Fobis-Loisy I, Miege C, Gaude T. Evidence for a sorting endosome in Arabidopsis root cells. Plant J. 53: 237-247 (2008).

Jaillais Y, Fobis-Loisy I, Miege C, Rollin C, Gaude T. AtSNX1 defines an endosome for auxin-carrier trafficking in Arabidopsis. Nature 443: 106-109 (2006).

Jain A, Leustek T. A cDNA clone for 5'-adenylylphosphosulfate kinase from Arabidopsis thaliana. Plant Physiol. 105: 771-772 (1994).

Jain A, Poling MD, Karthikeyan AS, Blakeslee JJ, Peer WA, Titapiwatanakun B, Murphy AS, Raghothama KG. Differential effects of sucrose and auxin on localized phosphate deficiency-induced modulation of different traits of root system architecture in Arabidopsis. Plant Physiol. 144: 232-247 (2007).

Jain A, Poling MD, Smith AP, Nagarajan VK, Lahner B, Meagher RB, Raghothama KG. Variations in the composition of gelling agents affect morphophysiological and molecular responses to deficiencies of phosphate and other nutrients. Plant Physiol. 150: 1033-1049 (2009).

Jain M, Tyagi AK, Khurana JP. Constitutive expression of a meiotic recombination protein gene homolog, OsTOP6A1, from rice confers abiotic stress tolerance in transgenic Arabidopsis plants. Plant Cell Rep. 27: 767-778 (2008).

Jain V, Kaiser W, Huber SC. Cytokinin inhibits the proteasome-mediated degradation of carbonylated proteins in Arabidopsis leaves. Plant Cell Physiol. 49: 843-852 (2008).

Jakab G, Manrique A, Zimmerli L, Metraux JP, Mauch-Mani B. Molecular characterization of a novel lipase-like pathogen-inducible gene family of Arabidopsis. Plant Physiol. 132: 2230-2239 (2003).

Jakab G, Ton J, Flors V, Zimmerli L, Metraux JP, Mauch-Mani B. Enhancing Arabidopsis salt and drought stress tolerance by chemical priming for its abscisic acid responses. Plant Physiol. 139: 267-274 (2005).

Jako C, Kumar A, Wei Y, Zou J, Barton DL, Giblin EM, Covello PS, Taylor DC. Seed-specific over-expression of an Arabidopsis cDNA encoding a diacylglycerol acyltransferase enhances seed oil content and seed weight. Plant Physiol. 126: 861-874 (2001).

Jakobsen I, Chen BD, Munkvold L, Lundsgaard T, Zhu YG. Contrasting phosphate acquisition of mycorrhizal fungi with that of root hairs using the root hairless barley mutant. Plant Cell Environ. 28: 928-938 (2005).

Jakoby M, Wang HY, Reidt W, Weisshaar B, Bauer P. FRU (BHLH029) is required for induction of iron mobilization genes in Arabidopsis thaliana. FEBS Lett. 577: 528-534 (2004).

Jakoby MJ, Falkenhan D, Mader MT, Brininstool G, Wischnitzki E, Platz N, Hudson A, Hulskamp M, Larkin J, Schnittger A. Transcriptional profiling of mature Arabidopsis trichomes reveals that NOECK encodes the MIXTA-like transcriptional regulator MYB106. Plant Physiol. 148: 1583-1602 (2008).

Jakoby MJ, Weinl C, Pusch S, Kuijt SJ, Merkle T, Dissmeyer N, Schnittger A. Analysis of the subcellular localization, function and proteolytic control of the Arabidopsis CDK inhibitor ICK1/KRP1. Plant Physiol. 141: 1293-1305 (2006).

Jamai A, Salome PA, Schilling SH, Weber AP, McClung CR. Arabidopsis photorespiratory serine hydroxymethyltransferase activity requires the mitochondrial accumulation of ferredoxin-dependent glutamate synthase. Plant Cell 21: 595-606 (2009).

Jambois A, Dauphin A, Kawano T, Ditengou FA, Bouteau F, Legue V, Lapeyrie F. Competitive antagonism between IAA and indole alkaloid hypaphorine must contribute to regulate ontogenesis. Physiol. Plant. 123: 120-129 (2005).

Jambunathan N, Mahalingam R. Analysis of Arabidopsis growth factor gene 1 (GFG1) encoding a nudix hydrolase during oxidative signaling. Planta 224: 1-11 (2006).

Jambunathan N, McNellis TW. Regulation of Arabidopsis COPINE 1 gene expression in response to pathogens and abiotic stimuli. Plant Physiol. 132: 1370-1381 (2003).

James CA, Strand SE. Phytoremediation of small organic contaminants using transgenic plants. Curr. Opin. Biotechnol. 20: 237-241 (2009).

James DW Jr, Lim E, Keller J, Plooy I, Ralston E, Dooner HK. Directed tagging of the Arabidopsis FATTY ACID ELONGATION1 (FAE1) gene with the maize transposon activator. Plant Cell 7: 309-319 (1995).

James TY, Boulianne RP, Bottoli APF, Granado JD, Aebi M, Kues U. The pab1 gene of Coprinus cinereus encodes a bifunctional protein for para-aminobenzoic acid (PABA) synthesis: implications for the evolution of fused PABA synthases. J. Basic Microbiol. 42: 91-103 (2002).

Jamet E, Canut H, Boudart G, Pont-Lezica RF. Cell wall proteins: a new insight through proteomics. Trends Plant Sci. 11: 33-39 (2006).

Jamir Y, Guo M, Oh HS, Petnicki-Ocwieja T, Chen S, Tang X, Dickman MB, Collmer A, R Alfano J. Identification of Pseudomonas syringae type III effectors that can suppress programmed cell death in plants and yeast. Plant J. 37: 554-565 (2004).

Jammes F, Lecomte P, de Almeida-Engler J, Bitton F, Martin-Magniette ML, Renou JP, Abad P, Favery B. Genome-wide expression profiling of the host response to root-knot nematode infection in Arabidopsis. Plant J. 44: 447-458 (2005).

Janacek SH, Trenkamp S, Palmer B, Brown NJ, Parsley K, Stanley S, Astley HM, Rolfe SA, Paul Quick W, Fernie AR, Hibberd JM. Photosynthesis in cells around veins of the C(3) plant Arabidopsis thaliana is important for both the shikimate pathway and leaf senescence as well as contributing to plant fitness. Plant J. 59: 329-343 (2009).

Jander G, Baerson SR, Hudak JA, Gonzalez KA, Gruys KJ, Last RL. Ethylmethanesulfonate saturation mutagenesis in Arabidopsis to determine frequency of herbicide resistance. Plant Physiol. 131: 139-146 (2003).

Jander G, Cui J, Nhan B, Pierce NE, Ausubel FM. The TASTY locus on chromosome 1 of Arabidopsis affects feeding of the insect herbivore Trichoplusia ni. Plant Physiol. 126: 890-898 (2001).

Jander G, Norris SR, Joshi V, Fraga M, Rugg A, Yu S, Li L, Last RL. Application of a high-throughput HPLC-MS/MS assay to Arabidopsis mutant screening; evidence that threonine aldolase plays a role in seed nutritional quality. Plant J. 39: 465-475 (2004).

Jander G, Norris SR, Rounsley SD, Bush DF, Levin IM, Last RL. Arabidopsis map-based cloning in the post-genome era. Plant Physiol. 129: 440-450 (2002).

Jang HJ, Pih KT, Kang SG, Lim JH, Jin JB, Piao HL, Hwang I. Molecular cloning of a novel Ca2+-binding protein that is induced by NaCl stress. Plant Mol. Biol. 37: 839-847 (1998).

Jang JY, Kim DG, Kim YO, Kim JS, Kang H. An expression analysis of a gene family encoding plasma membrane aquaporins in response to abiotic stresses in Arabidopsis thaliana. Plant Mol. Biol. 54: 713-725 (2004).

Jang JY, Lee SH, Rhee JY, Chung GC, Ahn SJ, Kang H. Transgenic Arabidopsis and tobacco plants overexpressing an aquaporin respond differently to various abiotic stresses. Plant Mol. Biol. 64: 621-632 (2007).

Jang JY, Rhee JY, Kim DG, Chung GC, Lee JH, Kang H. Ectopic expression of a foreign aquaporin disrupts the natural expression patterns of endogenous aquaporin genes and alters plant responses to different stress conditions. Plant Cell Physiol. 48: 1331-1339 (2007).

Jang YH, Lee JH, Kim JK. Abscisic acid does not disrupt either the Arabidopsis FCA-FY interaction or its rice counterpart in vitro. Plant Cell Physiol. 49: 1898-1901 (2008).

Janoudi AK, Gordon WR, Wagner D, Quail P, Poff KL. Multiple phytochromes are involved in red-light-induced enhancement of first-positive phototropism in Arabidopsis thaliana. Plant Physiol. 113: 975-979 (1997).

Jansen MAK, Hill LM, Thorneley RNF. A novel stress-acclimation response in Spirodela punctata (Lemnaceae): 2,4,6-trichlorophenol triggers an increase in the level of an extracellular peroxidase, capable of the oxidative dechlorination of this xenobiotic pollutant. Plant Cell Environ. 27: 603-613 (2004).

Janska H. ATP-dependent proteases in plant mitochondria: what do we know about them today?. Physiol. Plant. 123: 399-405 (2005).

Jansson S, Andersson J, Kim SJ, Jackowski G. An Arabidopsis thaliana protein homologous to cyanobacterial high-light-inducible proteins. Plant Mol. Biol. 42: 345-351 (2000).

Jansson S, Douglas CJ. Populus: a model system for plant biology. Annu. Rev. Plant Biol. 58: 435-458 (2007).

Jarillo JA, Capel J, Leyva A, Martinez-Zapater JM, Salinas J. Two related low-temperature-inducible genes of Arabidopsis encode proteins showing high homology to 14-3-3 proteins, a family of putative kinase regulators. Plant Mol. Biol. 25: 693-704 (1994).

Jarillo JA, Leyva A, Salinas J, Martinez-Zapater JM. Low temperature induces the accumulation of alcohol dehydrogenase mRNA in Arabidopsis thaliana, a chilling-tolerant plant. Plant Physiol. 101: 833-837 (1993).

Jarvis MC, Briggs SPH, Knox JP. Intercellular adhesion and cell separation in plants. Plant Cell Environ. 26: 977-989 (2003).

Jasencakova Z, Soppe WJ, Meister A, Gernand D, Turner BM, Schubert I. Histone modifications in Arabidopsis- high methylation of H3 lysine 9 is dispensable for constitutive heterochromatin. Plant J. 33: 471-480 (2003).

Jasinski M, Ducos E, Martinoia E, Boutry M. The ATP-binding cassette transporters: structure, function, and gene family comparison between rice and Arabidopsis. Plant Physiol. 131: 1169-1177 (2003).

Jasinski S, Perennes C, Bergounioux C, Glab N. Comparative molecular and functional analyses of the tobacco cyclin-dependent kinase Inhibitor NtKIS1a and its spliced variant NtKIS1b. Plant Physiol. 130: 1871-1882 (2002).

Javot H, Lauvergeat V, Santoni V, Martin-Laurent F, Guclu J, Vinh J, Heyes J, Franck KI, Schaffner AR, Bouchez D, Maurel C. Role of a single aquaporin isoform in root water uptake. Plant Cell 15: 509-522 (2003).

Javot H, Maurel C. The role of aquaporins in root water uptake. Ann. Bot. (Lond.) 90: 301-313 (2002).

Jean Finnegan E, Kovac KA, Jaligot E, Sheldon CC, James Peacock W, Dennis ES. The downregulation of FLOWERING LOCUS C (FLC) expression in plants with low levels of DNA methylation and by vernalization occurs by distinct mechanisms. Plant J. 44: 420-432 (2005).

Jeannette E, Rona JP, Bardat F, Cornel D, Sotta B, Miginiac E. Induction of RAB18 gene expression and activation of K+ outward rectifying channels depend on an extracellular perception of ABA in Arabidopsis thaliana suspension cells. Plant J. 18: 13-22 (1999).

Jen CH, Manfield IW, Michalopoulos I, Pinney JW, Willats WG, Gilmartin PM, Westhead DR. The Arabidopsis co-expression tool (ACT): a WWW-based tool and database for microarray-based gene expression analysis. Plant J. 46: 336-348 (2006).

Jenik PD, Jurkuta RE, Barton MK. Interactions between the cell cycle and embryonic patterning in Arabidopsis uncovered by a mutation in DNA polymerase {varepsilon}. Plant Cell 17: 3362-3377 (2005).

Jenkins GI. UV and blue light signal transduction in Arabidopsis. Plant Cell Environ. 20: 773-778 (1997).

Jenkins ME, Suzuki TC, Mount DW. Evidence that heat and ultraviolet radiation activate a common stress-response program in plants that is altered in the uvh6 mutant of Arabidopsis thaliana. Plant Physiol. 115: 1351-1358 (1997).

Jenkins T, Blunden G, Wu Y, Hankins SD, Gabrielsen BO. Are the reductions in nematode attack on plants treated with seaweed extracts the result of stimulation of the formaldehyde cycle? Acta Biol. Hung. 49: 421-427 (1998).

Jenks MA, Rich PJ, Rhodes D, Ashworth EN, Axtell JD, Ding CK. Leaf sheath cuticular waxes on bloomless and sparse-bloom mutants of Sorghum bicolor. Phytochemistry 54: 577-584 (2000).

Jensen MK, Hagedorn PH, de Torres-Zabala M, Grant MR, Rung JH, Collinge DB, Lyngkjaer MF. Transcriptional regulation by a NAC (NAM-ATAF1,2-CUC2) transcription factor attenuates ABA signalling for efficient basal defence towards Blumeria graminis f.sp. hordei in Arabidopsis. Plant J. 56: 867-880 (2008).

Jensen MK, Rung JH, Gregersen PL, Gjetting T, Fuglsang AT, Hansen M, Joehnk N, Lyngkjaer MF, Collinge DB. The HvNAC6 transcription factor: a positive regulator of penetration resistance in barley and Arabidopsis. Plant Mol. Biol. 65: 137-150 (2007).

Jensen RB, Jensen KL, Jespersen HM, Skriver K. Widespread occurrence of a highly conserved RING-H2 zinc finger motif in the model plant Arabidopsis thaliana. FEBS Lett. 436: 283-287 (1998).

Jeong HJ, Jwa NS, Kim KN. Identification and characterization of protein kinases that interact with the CBL3 calcium sensor in Arabidopsis. Plant Sci. 169: 1125-1135 (2005).

Jeong J, Guerinot ML. Homing in on iron homeostasis in plants. Trends Plant Sci. 14: 280-285 (2009).

Jeong S, Trotochaud AE, Clark SE. The Arabidopsis CLAVATA2 gene encodes a receptor-like protein required for the stability of the CLAVATA1 receptor-like kinase. Plant Cell 11: 1925-1934 (1999).

Jeong SY, Rose A, Joseph J, Dasso M, Meier I. Plant-specific mitotic targeting of RanGAP requires a functional WPP domain. Plant J. 42: 270-282 (2005).

Jeong YM, Mun JH, Kim H, Lee SY, Kim SG. An upstream region in the first intron of petunia actin-depolymerizing factor 1 affects tissue-specific expression in transgenic Arabidopsis (Arabidopsis thaliana). Plant J. 50: 230-239 (2007).

Jeong YM, Mun JH, Lee I, Woo JC, Hong CB, Kim SG. Distinct roles of the first introns on the expression of Arabidopsis profilin gene family members. Plant Physiol. 140: 196-209 (2006).

Jespersen HM, Kjaersgard IV, Ostergaard L, Welinder KG. From sequence analysis of three novel ascorbate peroxidases from Arabidopsis thaliana to structure, function and evolution of seven types of ascorbate peroxidase. Biochem. J. 326: 305-310 (1997).

Jeter CR, Tang W, Henaff E, Butterfield T, Roux SJ. Evidence of a novel cell signaling role for extracellular adenosine triphosphates and diphosphates in Arabidopsis. Plant Cell 16: 2652-2664 (2004).

Jez JM, Cahoon RE. Kinetic mechanism of glutathione synthetase from Arabidopsis thaliana. J. Biol. Chem. 279: 42726-42731 (2004).

Jia L, Clegg MT, Jiang T. Excess non-synonymous substitutions suggest that positive selection episodes occurred during the evolution of DNA-binding domains in the Arabidopsis R2R3-MYB gene family. Plant Mol. Biol. 52: 627-642 (2003).

Jia L, Clegg MT, Jiang T. Evolutionary dynamics of the DNA-binding domains in putative R2R3-MYB genes identified from rice subspecies indica and japonica genomes. Plant Physiol. 134: 575-585 (2004).

Jiang C, Xu J, Zhang H, Zhang X, Shi J, Li M, Ming F. A cytosolic class I small heat shock protein, RcHSP17.8, of Rosa chinensis confers resistance to a variety of stresses to Escherichia coli, yeast and Arabidopsis thaliana. Plant Cell Environ. Apr 22 [Epub ahead of print] (2009).

Jiang K, Schwarzer C, Lally E, Zhang S, Ruzin S, Machen T, Remington SJ, Feldman L. Expression and characterization of a redox-sensing green fluorescent protein (reduction-oxidation-sensitive green fluorescent protein) in Arabidopsis. Plant Physiol. 141: 397-403 (2006).

Jiang L, Xia M, Strittmatter LI, Makaroff CA. The Arabidopsis cohesin protein SYN3 localizes to the nucleolus and is essential for gametogenesis. Plant J. 50: 1020-1034 (2007).

Jiang L, Yang SL, Xie LF, Puah CS, Zhang XQ, Yang WC, Sundaresan V, Ye D. VANGUARD1 encodes a pectin methylesterase that enhances pollen tube growth in the Arabidopsis style and transmitting tract. Plant Cell 17: 584-596 (2005).

Jiang M, Zhang J. Cross-talk between calcium and reactive oxygen species originated from NADPH oxidase in abscisic acid-induced antioxidant defence in leaves of maize seedlings. Plant Cell Environ. 26: 929-939 (2003).

Jiang Y, Deyholos MK. Functional characterization of Arabidopsis NaCl-inducible WRKY25 and WRKY33 transcription factors in abiotic stresses. Plant Mol. Biol. 69: 91-105 (2009).

Jiang Y, Yang B, Harris NS, Deyholos MK. Comparative proteomic analysis of NaCl stress-responsive proteins in Arabidopsis roots. J. Exp. Bot. 58: 3591-3607 (2007).

Jiao Y, Ma L, Strickland E, Deng XW. Conservation and divergence of light-regulated genome expression patterns during seedling development in rice and Arabidopsis. Plant Cell 17: 3239-3256 (2005).

Jiao Y, Riechmann JL, Meyerowitz EM. Transcriptome-wide analysis of uncapped mRNAs in Arabidopsis reveals regulation of mRNA degradation. Plant Cell 20: 2571-2585 (2008).

Jiao Y, Yang H, Ma L, Sun N, Yu H, Liu T, Gao Y, Gu H, Chen Z, Wada M, Gerstein M, Zhao H, Qu LJ, Deng XW. A genome-wide analysis of blue-light regulation of Arabidopsis transcription factor gene expression during seedling development. Plant Physiol. 133: 1480-1493 (2003).

Jimenez JA, Rodriguez D, Calvo AP, Mortensen LC, Nicolas G, Nicolas C. Expression of a transcription factor (FsERF1) involved in ethylene signalling during the breaking of dormancy in Fagus sylvatica seeds. Physiol. Plant. 125: 373-380 (2005).

Jin H, Liu D, Zuo K, Gong Y, Miao Z, Chen Y, Ren W, Sun X, Tang K. Molecular cloning and characterization of Crmdr1, a novel MDR-type ABC transporter gene from Catharanthus roseus. DNA Seq. 18: 316-325 (2007).

Jin H, Martin C. Multifunctionality and diversity within the plant MYB-gene family. Plant Mol. Biol. 41: 577-585 (1999).

Jin JB, Bae H, Kim SJ, Jin YH, Goh CH, Kim DH, Lee YJ, Tse YC, Jiang L, Hwang I. The Arabidopsis dynamin-like proteins ADL1C and ADL1E play a critical role in mitochondrial morphogenesis. Plant Cell 15: 2357-2369 (2003).

Jin P, Wood MD, Wu Y, Xie Z, Katagiri F. Cleavage of the Pseudomonas syringae type III effector AvrRpt2 requires a host factor(s) common among eukaryotes and is important for AvrRpt2 localization in the host cell. Plant Physiol. 133: 1072-1082 (2003).

Jin S, Xu R, Wei Y, Goodwin PH. Increased expression of a plant actin gene during a biotrophic interaction between round-leaved mallow, Malva pusilla, and Colletotrichum gloeosporioides f. sp. malvae. Planta 209: 487-494 (1999).

Jing HC, Anderson L, Sturre MJ, Hille J, Dijkwel PP. Arabidopsis CPR5 is a senescence-regulatory gene with pleiotropic functions as predicted by the evolutionary theory of senescence. J. Exp. Bot. 58: 3885-3894 (2007).

Jing HC, Schippers JH, Hille J, Dijkwel PP. Ethylene-induced leaf senescence depends on age-related changes and OLD genes in Arabidopsis. J. Exp. Bot. 56: 2915-2923 (2005).

Jing HC, Sturre MJ, Hille J, Dijkwel PP. Arabidopsis onset of leaf death mutants identify a regulatory pathway controlling leaf senescence. Plant J. 32: 51-63 (2002).

Jing Y, Cui D, Bao F, Hu Z, Qin Z, Hu Y. Tryptophan deficiency affects the organ growth by retarding cell expansion in Arabidopsis. Plant J. 57: 511-521 (2009).

Job C, Rajjou L, Lovigny Y, Belghazi M, Job D. Patterns of protein oxidation in Arabidopsis seeds and during germination. Plant Physiol. 138: 790-802 (2005).

Johannes E, Collings DA, Rink JC, Allen NS. Cytoplasmic pH dynamics in maize pulvinal cells induced by gravity vector changes. Plant Physiol. 127: 119-130 (2001).

Johannesson H, Wang Y, Hanson J, Engstrom P. The Arabidopsis thaliana homeobox gene ATHB5 is a potential regulator of abscisic acid responsiveness in developing seedlings. Plant Mol. Biol. 51: 719-729 (2003).

Johansen JN, Chow CM, Moore I, Hawes C. AtRAB-H1b and AtRAB-H1c GTPases, homologues of the yeast Ypt6, target reporter proteins to the Golgi when expressed in Nicotiana tabacum and Arabidopsis thaliana. J. Exp. Bot. 60: 3179-3193 (2009).

Johansen W, Wilson RC. Viral suppressor proteins show varying abilities and effectiveness to suppress transgene-induced post-transcriptional gene silencing of endogenous Chalcone synthase in transgenic Arabidopsis. Plant Cell Rep. 27: 911-921 (2008).

Johanson U, Karlsson M, Johansson I, Gustavsson S, Sjovall S, Fraysse L, Weig AR, Kjellbom P. The complete set of genes encoding major intrinsic proteins in Arabidopsis provides a framework for a new nomenclature for major intrinsic proteins in plants. Plant Physiol. 126: 1358-1369 (2001).

Johansson I, Wulfetange K, Poree F, Michard E, Gajdanowicz P, Lacombe B, Sentenac H, Thibaud JB, Mueller-Roeber B, Blatt MR, Dreyer I. External K+ modulates the activity of the Arabidopsis potassium channel SKOR via an unusual mechanism. Plant J. 46: 269-281 (2006).

John UP, Polotnianka RM, Sivakumaran KA, Chew O, Mackin L, Kuiper MJ, Talbot JP, Nugent GD, Mautord J, Schrauf GE, Spangenberg GC. Ice recrystallization inhibition proteins (IRIPs) and freeze tolerance in the cryophilic Antarctic hair grass Deschampsia antarctica E. Desv. Plant Cell Environ. 32: 336-348 (2009).

Johnsen O, Fossdal CG, Nagy N, Molmann J, Daehlen OG, Skroppa T. Climatic adaptation in Picea abies progenies is affected by the temperature during zygotic embryogenesis and seed maturation. Plant Cell Environ. 28: 1090-1102 (2005).

Johnson AC, Strasser B, Cerdan PD, Amasino RM. Acceleration of flowering during shade-avoidance in Arabidopsis thaliana alters the balance between FLOWERING LOCUS C-mediated repression and photoperiodic induction of flowering. Plant Physiol. 148: 1681-1694 (2008).

Johnson BS, Singh NK, Cherry JH, Locy RD. Purification and characterization of glutamate decarboxylase from cowpea. Phytochemistry 46: 39-44 (1997).

Johnson C, Boden E, Arias J. Salicylic acid and NPR1 induce the recruitment of trans-activating TGA factors to a defense gene promoter in Arabidopsis. Plant Cell 15: 1846-1858 (2003).

Johnson CD, Chary SN, Chernoff EA, Zeng Q, Running MP, Crowell DN. Protein geranylgeranyltransferase I is involved in specific aspects of abscisic acid and auxin signaling in Arabidopsis. Plant Physiol. 139: 722-733 (2005).

Johnson CS, Kolevski B, Smyth DR. TRANSPARENT TESTA GLABRA2, a trichome and seed coat development gene of Arabidopsis, encodes a WRKY transcription factor. Plant Cell 14: 1359-1375 (2002).

Johnson KA, Sistrunk ML, Polisensky DH, Braam J. Arabidopsis thaliana responses to mechanical stimulation do not require ETR1 or EIN2. Plant Physiol. 116: 643-649 (1998).

Johnson KL, Degnan KA, Ross Walker J, Ingram GC. AtDEK1 is essential for specification of embryonic epidermal cell fate. Plant J. 44: 114-127 (2005).

Johnson KL, Faulkner C, Jeffree CE, Ingram GC. The phytocalpain defective kernel 1 is a novel Arabidopsis growth regulator whose activity is regulated by proteolytic processing. Plant Cell 20: 2619-2630 (2008).

Johnson KL, Jones BJ, Bacic A, Schultz CJ. The fasciclin-like arabinogalactan proteins of Arabidopsis. A multigene family of putative cell adhesion molecules. Plant Physiol. 133: 1911-1925 (2003).

Johnson MD. The Arabidopsis thaliana myo-inositol 1-phosphate synthase (EC Plant Physiol. 105: 1023-1024 (1994).

Johnson MP, Davison PA, Ruban AV, Horton P. The xanthophyll cycle pool size controls the kinetics of non-photochemical quenching in Arabidopsis thaliana. FEBS Lett. 582: 262-266 (2008).

Johnson MP, Perez-Bueno ML, Zia A, Horton P, Ruban AV. The zeaxanthin-independent and zeaxanthin-dependent qE components of non-photochemical quenching involve common conformational changes within the Photosystem II antenna in Arabidopsis thaliana. Plant Physiol. 149: 1061-1075 (2009).

Johnson RR, Wagner RL, Verhey SD, Walker-Simmons MK. The abscisic acid-responsive kinase PKABA1 interacts with a seed-specific abscisic acid response element-binding factor, TaABF, and phosphorylates TaABF peptide sequences. Plant Physiol. 130: 837-846 (2002).

Johnson X, Brcich T, Dun E, Goussot M, Haurogne K, Beveridge CA, Rameau C. Branching genes are conserved across species. Genes controlling a novel signal in pea are co-regulated by other long-distance signals. Plant Physiol. 142: 1014-1026 (2006).

Johnson-Brousseau SA, McCormick S. A compendium of methods useful for characterizing Arabidopsis pollen mutants and gametophytically- expressed genes. Plant J. 39: 761-775 (2004).

Johri S, Jamwal U, Rasool S, Kumar A, Verma V, Qazi GN. Purification and characterization of peroxidases from Withania somnifera (AGB 002) and their ability to oxidize IAA. Plant Sci. 169: 1014-1021 (2005).

Jonassen EM, Lea US, Lillo C. HY5 and HYH are positive regulators of nitrate reductase in seedlings and rosette stage plants. Planta 227: 559-564 (2008).

Jonczyk R, Genschel U. Molecular adaptation and allostery in plant pantothenate synthetases. J. Biol. Chem. 281: 37435-37446 (2006).

Jonczyk R, Ronconi S, Rychlik M, Genschel U. Pantothenate synthetase is essential but not limiting for pantothenate biosynthesis in Arabidopsis. Plant Mol. Biol. 66: 1-14 (2008).

Jones AM, Ecker JR, Chen JG. A reevaluation of the role of the heterotrimeric G protein in coupling light responses in Arabidopsis. Plant Physiol. 131: 1623-1627 (2003).

Jones AM, Im KH, Savka MA, Wu MJ, DeWitt NG, Shillito R, Binns AN. Auxin-dependent cell expansion mediated by overexpressed auxin-binding protein 1. Science 282: 1114-1117 (1998).

Jones AM, Thomas V, Bennett MH, Mansfield J, Grant M. Modifications to the Arabidopsis defense proteome occur prior to significant transcriptional change in response to inoculation with Pseudomonas syringae. Plant Physiol. 142: 1603-1620 (2006).

Jones CG, Lycett GW, Tucker GA. Protease inhibitor studies and cloning of a serine carboxypeptidase cDNA from germinating seeds of pea (Pisum sativum L.). Eur. J. Biochem. 235: 574-578 (1996).

Jones DL, Gilroy S, Larsen PB, Howell SH, Kochian LV. Effect of aluminum on cytoplasmic Ca2+ homeostasis in root hairs of Arabidopsis thaliana (L.). Planta 206: 378-387 (1998).

Jones HD, Kurup S, Peters NC, Holdsworth MJ. Identification and analysis of proteins that interact with the Avena fatua homologue of the maize transcription factor VIVIPAROUS 1. Plant J. 21: 133-142 (2000).

Jones JD. Putting knowledge of plant disease resistance genes to work. Curr. Opin. Plant Biol. 4: 281-287 (2001).

Jones L, Ennos AR, Turner SR. Cloning and characterization of irregular xylem4 (irx4): a severely lignin-deficient mutant of Arabidopsis. Plant J. 26: 205-216 (2001).

Jones L, Keining T, Eamens A, Vaistij FE. Virus-induced gene silencing of argonaute genes in Nicotiana benthamiana demonstrates that extensive systemic silencing requires Argonaute1-like and Argonaute4-like genes. Plant Physiol. 141: 598-606 (2006).

Jones MA, Grierson CS. A simple method for obtaining cell-specific cDNA from small numbers of growing root-hair cells in Arabidopsis thaliana. J. Exp. Bot. 54: 1373-1378 (2003).

Jones MA, Raymond MJ, Smirnoff N. Analysis of the root-hair morphogenesis transcriptome reveals the molecular identity of six genes with roles in root-hair development in Arabidopsis. Plant J. 45: 83-100 (2006).

Jones MA, Raymond MJ, Yang Z, Smirnoff N. NADPH oxidase-dependent reactive oxygen species formation required for root hair growth depends on ROP GTPase. J. Exp. Bot. 58: 1261-1270 (2007).

Jones PL, Willey DL, Gacesa P, Harwood JL. Isolation, characterisation and expression of a cDNA for pea cholinephosphate cytidylyltransferase. Plant Mol. Biol. 37: 179-185 (1998).

Jones SE, Demeo JS, Davies NW, Noonan SE, Ross JJ. Stems of the Arabidopsis pin1-1 mutant are not deficient in free indole-3-acetic acid. Planta 222: 530-534 (2005).

Joo JH, Wang S, Chen JG, Jones AM, Fedoroff NV. Different signaling and cell death roles of heterotrimeric G protein {alpha} and {beta} subunits in the Arabidopsis oxidative stress response to ozone. Plant Cell 17: 957-970 (2005).

Joo S, Liu Y, Lueth A, Zhang S. MAPK phosphorylation-induced stabilization of ACS6 protein is mediated by the non-catalytic C-terminal domain, which also contains the cis-determinant for rapid degradation by the 26S proteasome pathway. Plant J. 54: 129-140 (2008).

Joo S, Park KY, Kim WT. Light differentially regulates the expression of two members of the auxin-induced 1-aminocyclopropane-1-carboxylate synthase gene family in mung bean (Vigna radiata L.) seedlings. Planta 218: 976-988 (2004).

Joobeur T, King JJ, Nolin SJ, Thomas CE, Dean RA. The fusarium wilt resistance locus Fom-2 of melon contains a single resistance gene with complex features. Plant J. 39: 283-297 (2004).

Jorda L, Conejero V, Vera P. Characterization of P69E and P69F, two differentially regulated genes encoding new members of the subtilisin-like proteinase family from tomato plants. Plant Physiol. 122: 67-74 (2000).

Jorda L, Vera P. Local and systemic induction of two defense-related subtilisin-like protease promoters in transgenic Arabidopsis plants. Luciferin induction of PR gene expression. Plant Physiol. 124: 1049-1058 (2000).

Jordan ET, Hatfield PM, Hondred D, Talon M, Zeevaart JA, Vierstra RD. Phytochrome A overexpression in transgenic tobacco. Correlation of dwarf phenotype with high concentrations of phytochrome in vascular tissue and attenuated gibberellin levels. Plant Physiol. 107: 797-805 (1995).

Jordan ND, West JP, Bottley A, Sheikh M, Furner IGiacomelli L, Masi A, Ripoll DR, Lee MJ, van Wijk KJ. Transcript profiling of the hypomethylated hog1 mutant of Arabidopsis. Plant Mol. Biol. 65: 571-586 (2007).

Joshee N, Kisaka H, Kitagawa Y. Isolation and characterization of a water stress-specific genomic gene, pwsi 18, from rice. Plant Cell Physiol. 39: 64-72 (1998).

Joshi V, Laubengayer KM, Schauer N, Fernie AR, Jander G. Two Arabidopsis threonine aldolases are nonredundant and compete with threonine deaminase for a common substrate pool. Plant Cell 18: 3564-3575 (2006).

Josse EM, Simkin AJ, Gaffe J, Laboure AM, Kuntz M, Carol P. A plastid terminal oxidase associated with carotenoid desaturation during chromoplast differentiation. Plant Physiol. 123: 1427-1436 (2000).

Jossier M, Bouly JP, Meimoun P, Arjmand A, Lessard P, Hawley S, Grahame Hardie D, Thomas M. SnRK1 (SNF1-related kinase 1) has a central role in sugar and ABA signalling in Arabidopsis thaliana. Plant J. 59: 316-328 (2009).

Jost R, Altschmied L, Bloem E, Bogs J, Gershenzon J, Hahnel U, Hansch R, Hartmann T, Kopriva S, Kruse C, Mendel RR, Papenbrock J, Reichelt M, Rennenberg H, Schnug E, Schmidt A, Textor S, Tokuhisa J, Wachter A, Wirtz M, Rausch T, Hell R. Expression profiling of metabolic genes in response to methyl jasmonate reveals regulation of genes of primary and secondary sulfur-related pathways in Arabidopsis thaliana. Photosynth Res. 86: 491-508 (2005).

Jost R, Berkowitz O, Wirtz M, Hopkins L, Hawkesford MJ, Hell R. Genomic and functional characterization of the oas gene family encoding O-acetylserine (thiol) lyases, enzymes catalyzing the final step in cysteine biosynthesis in Arabidopsis thaliana. Gene 253: 237-247 (2000).

Jou Y, Chou PH, He M, Hung Y, Yen HE. Tissue-specific expression and functional complementation of a yeast potassium-uptake mutant by a salt-induced ice plant gene mcSKD1. Plant Mol. Biol. 54: 881-893 (2004).

Joubes J, Raffaele S, Bourdenx B, Garcia C, Laroche-Traineau J, Moreau P, Domergue F, Lessire R. The VLCFA elongase gene family in Arabidopsis thaliana: phylogenetic analysis, 3D modelling and expression profiling. Plant Mol. Biol. 67: 547-566 (2008).

Jourdes M, Cardenas CL, Laskar DD, Moinuddin SG, Davin LB, Lewis NG. Plant cell walls are enfeebled when attempting to preserve native lignin configuration with poly-p-hydroxycinnamaldehydes: Evolutionary implications. Phytochemistry 68: 1932-1956 (2007).

Journot-Catalino N, Somssich IE, Roby D, Kroj T. The transcription factors WRKY11 and WRKY17 act as negative regulators of basal resistance in Arabidopsis thaliana. Plant Cell 18: 3289-3302 (2006).

Jouve L, Gaspar T, Kevers C, Greppin H, Degli Agosti R. Involvement of indole-3-acetic acid in the circadian growth of the first internode of Arabidopsis. Planta 209: 136-142 (1999).

Juenger TE, Mckay JK, Hausmann N, Keurentjes JJB, Sen S, Stowe KA, Dawson TE, Simms EL, Richards JH. Identification and characterization of QTL underlying whole-plant physiology in Arabidopsis thaliana: delta C-13, stomatal conductance and transpiration efficiency. Plant Cell Environ. 28: 697-708 (2005).

Juergensen K, Scholz-Starke J, Sauer N, Hess P, Van Bel AJ, Grundler FM. The companion cell-specific Arabidopsis disaccharide carrier AtSUC2 is expressed in nematode-induced syncytia. Plant Physiol. 131: 61-69 (2003).

Jullien PE, Kinoshita T, Ohad N, Berger F. Maintenance of DNA methylation during the Arabidopsis life cycle is essential for parental imprinting. Plant Cell 18: 1360-1372 (2006).

Jumtee K, Bamba T, Okazawa A, Fukusaki E, Kobayashi A. Integrated metabolite and gene expression profiling revealing phytochrome A regulation of polyamine biosynthesis of Arabidopsis thaliana. J. Exp. Bot. 59: 1187-1200 (2008).

Jun JH, Kim CS, Cho DS, Kwak JM, Ha CM, Park YS, Cho BH, Patton DA, Nam HG. Random antisense cDNA mutagenesis as an efficient functional genomic approach in higher plants. Planta 214: 668-674 (2002).

Jung B, Florchinger M, Kunz HH, Traub M, Wartenberg R, Jeblick W, Neuhaus HE, Mohlmann T. Uridine-ribohydrolase is a key regulator in the uridine degradation pathway of Arabidopsis. Plant Cell 21: 876-891 (2009).

Jung HS, Niyogi KK. Quantitative genetic analysis of thermal dissipation in Arabidopsis. Plant Physiol. 150: 977-986 (2009).

Jung HW, Kim KD, Hwang BK. Identification of pathogen-responsive regions in the promoter of a pepper lipid transfer protein gene (CALTPI) and the enhanced resistance of the CALTPI transgenic Arabidopsis against pathogen and environmental stresses. Planta 221: 361-373 (2005).

Jung HW, Kim W, Hwang BK. Three pathogen-inducible genes encoding lipid transfer protein from pepper are differentially activated by pathogens, abiotic, and environmental stresses. Plant Cell Environ. 26: 915-928 (2003).

Jung HW, Tschaplinski TJ, Wang L, Glazebrook J, Greenberg JT. Priming in systemic plant immunity. Science 324: 89-91 (2009).

Jung J, Won SY, Suh SC, Kim H, Wing R, Jeong Y, Hwang I, Kim M. The barley ERF-type transcription factor HvRAF confers enhanced pathogen resistance and salt tolerance in Arabidopsis. Planta 225: 575-88 (2007).

Jung JH, Park CM. MIR166/165 genes exhibit dynamic expression patterns in regulating shoot apical meristem and floral development in Arabidopsis. Planta 225: 1327-1338 (2007).

Jung JH, Yun J, Seo YH, Park CM. Characterization of an Arabidopsis gene that mediates cytokinin signaling in shoot apical meristem development. Mol. Cells 19: 342-349 (2005).

Jung JY, Shin R, Schachtman DP. Ethylene mediates response and tolerance to potassium deprivation in Arabidopsis. Plant Cell 21: 607-621 (2009).

Jung S, Lee Y, Yang K, Lee SB, Jang SM, Ha SB, Back K. Dual targeting of Myxococcus xanthus protoporphyrinogen oxidase into chloroplasts and mitochondria and high level oxyfluorfen resistance. Plant Cell Environ. 27: 1436-1446 (2004).

Jung SH, Lee JY, Lee DH. Use of SAGE technology to reveal changes in gene expression in Arabidopsis leaves undergoing cold stress. Plant Mol. Biol. 52: 553-567 (2003).

Junghans U, Polle A, Duchting P, Weiler E, Kuhlman B, Gruber F, Teichmann T. Adaptation to high salinity in poplar involves changes in xylem anatomy and auxin physiology. Plant Cell Environ. 29: 1519-1531 (2006).

Junk DJ, Mourad GS. Isolation and expression analysis of the isopropylmalate synthase gene family of Arabidopsis thaliana. J. Exp. Bot. 53: 2453-2454 (2002).

Jurca ME, Bottka S, Feher A. Characterization of a family of Arabidopsis receptor-like cytoplasmic kinases (RLCK class VI). Plant Cell Rep. 27: 739-748 (2008).

Justin AM, Kader JC, Collin S. Synthetic capacity of Arabidopsis phosphatidylinositol synthase 1 expressed in Escherichia coli. Biochim. Biophys. Acta 1634: 52-60 (2003).

Justin AM, Kader JC, Collin S. Phosphatidylinositol synthesis and exchange of the inositol head are catalysed by the single phosphatidylinositol synthase 1 from Arabidopsis. Eur. J. Biochem. 269: 2347-2352 (2002).

Kabeya Y, Sato N. Unique translation initiation at the second AUG codon determines mitochondrial localization of the phage-type RNA polymerases in the moss Physcomitrella patens. Plant Physiol. 138: 369-382 (2005).

Kachroo A, Lapchyk L, Fukushige H, Hildebrand D, Klessig D, Kachroo P. Plastidial fatty acid signaling modulates salicylic acid- and jasmonic acid-mediated defense pathways in the Arabidopsis ssi2 mutant. Plant Cell 15: 2952-2965 (2003).

Kachroo A, Shanklin J, Whittle E, Lapchyk L, Hildebrand D, Kachroo P. The Arabidopsis stearoyl-acyl carrier protein-desaturase family and the contribution of leaf isoforms to oleic acid synthesis. Plant Mol. Biol. 63: 257-271 (2007).

Kachroo P, Venugopal SC, Navarre DA, Lapchyk L, Kachroo A. Role of salicylic acid and fatty acid desaturation pathways in ssi2-mediated signaling. Plant Physiol. 139: 1717-1735 (2005).

Kachroo P, Yoshioka K, Shah J, Dooner HK, Klessig DF. Resistance to turnip crinkle virus in Arabidopsis is regulated by two host genes and is salicylic acid dependent but NPR1, ethylene, and jasmonate independent. Plant Cell 12: 677-690 (2000).

Kacperska A. Sensor types in signal transduction pathways in plant cells responding to abiotic stressors: do they depend on stress intensity?. Physiol. Plant. 122: 159-168 (2004).

Kaczorowski KA, Quail PH. Arabidopsis PSEUDO-RESPONSE REGULATOR7 is a signaling intermediate in phytochrome-regulated seedling deetiolation and phasing of the circadian clock. Plant Cell 15: 2654-2665 (2003).

Kagale S, Divi UK, Krochko JE, Keller WA, Krishna P. Brassinosteroid confers tolerance in Arabidopsis thaliana and Brassica napus to a range of abiotic stresses. Planta 225: 353-364 (2007).

Kai K, Horita J, Wakasa K, Miyagawa H. Three oxidative metabolites of indole-3-acetic acid from Arabidopsis thaliana. Phytochemistry 68: 1651-1663 (2007).

Kai K, Mizutani M, Kawamura N, Yamamoto R, Tamai M, Yamaguchi H, Sakata K, Shimizu BI. Scopoletin is biosynthesized via ortho-hydroxylation of feruloyl CoA by a 2-oxoglutarate-dependent dioxygenase in Arabidopsis thaliana. Plant J. 55: 989-999 (2008).

Kai K, Shimizu B, Mizutani M, Watanabe K, Sakata K. Accumulation of coumarins in Arabidopsis thaliana. Phytochemistry 67: 379-386 (2006).

Kai K, Wakasa K, Miyagawa H. Metabolism of indole-3-acetic acid in rice: identification and characterization of N-beta-d-glucopyranosyl indole-3-acetic acid and its conjugates. Phytochemistry 68: 2512-2522 (2007).

Kaiser BN, Rawat SR, Siddiqi MY, Masle J, Glass AD. Functional analysis of an Arabidopsis T-DNA "knockout" of the high-affinity NH(4)(+) transporter AtAMT1;1. Plant Physiol. 130: 1263-1275 (2002).

Kakani A, Li G, Peng Z. Role of AUX1 in the control of organ identity during in vitro organogenesis and in mediating tissue specific auxin and cytokinin interaction in Arabidopsis. Planta 229: 645-657 (2009).

Kakehi JI, Kuwashiro Y, Niitsu M, Takahashi T. Thermospermine is required for stem elongation in Arabidopsis thaliana. Plant Cell Physiol. 49: 1342-1349 (2008).

Kakimoto T. CKI1, a histidine kinase homolog implicated in cytokinin signal transduction. Science 274: 982-985 (1996).

Kakimoto T. Perception and signal transduction of cytokinins. Annu. Rev. Plant Biol. 54: 605-627 (2003).

Kalamaki MS, Alexandrou D, Lazari D, Merkouropoulos G, Fotopoulos V, Pateraki I, Aggelis A, Carrillo-Lopez A, Rubio-Cabetas MJ, Kanellis AK. Over-expression of a tomato N-acetyl-L-glutamate synthase gene (SlNAGS1) in Arabidopsis thaliana results in high ornithine levels and increased tolerance in salt and drought stresses. J. Exp. Bot. 60: 1859-1871 (2009).

Kalbina I, Strid A. Supplementary ultraviolet-B irradiation reveals differences in stress responses between Arabidopsis thaliana ecotypes. Plant Cell Environ. 29: 754-763 (2006).

Kalbina I, Strid A. The role of NADPH oxidase and MAP kinase phosphatase in UV-B-dependent gene expression in Arabidopsis. Plant Cell Environ. 29: 1783-1793 (2006).

Kaldis AD, Kousidis P, Kesanopoulos K, Prombona A. Light and circadian regulation in the expression of LHY and Lhcb genes in Phaseolus vulgaris. Plant Mol. Biol. 52: 981-997 (2003).

Kalinina A, Mihajlovic N, Grbic V V. Axillary meristem development in the branchless Zu-0 ecotype of Arabidopsis thaliana. Planta 215: 699-707 (2002).

Kalituho L, Beran KC, Jahns P. The transiently generated nonphotochemical quenching of excitation energy in Arabidopsis leaves is modulated by zeaxanthin. Plant Physiol. 143: 1861-1870 (2007).

Kalituho L, Grasses T, Graf M, Rech J, Jahns P. Characterization of a nonphotochemical quenching-deficient Arabidopsis mutant possessing an intact PsbS protein, xanthophyll cycle and lumen acidification. Planta 223: 532-541 (2006).

Kalituho L, Rech J, Jahns P. The roles of specific xanthophylls in light utilization. Planta 225: 423-439 (2007).

Kallberg Y, Oppermann U, Jornvall H, Persson B. Short-chain dehydrogenases/reductases (SDRs). Eur. J. Biochem. 269: 4409-4417 (2002).

Kallis RP, Ewy RG, Portis AR Jr. Alteration of the adenine nucleotide response and increased Rubisco activation activity of Arabidopsis Rubisco activase by site-directed mutagenesis. Plant Physiol. 123: 1077-1086 (2000).

Kamada-Nobusada T, Hayashi M, Fukazawa M, Sakakibara H, Nishimura M. A putative peroxisomal polyamine oxidase, AtPAO4, is involved in the polyamine catabolism in Arabidopsis thaliana. Plant Cell Physiol. 49: 1272-1282 (2008).

Kamada-Nobusada T, Sakakibara H. Molecular basis for cytokinin biosynthesis. Phytochemistry 70: 444-449 (2009).

Kamei A, Seki M, Umezawa T, Ishida J, Satou M, Akiyama K, Zhu JK, Shinozaki K. Analysis of gene expression profiles in Arabidopsis salt overly sensitive mutants sos2-1 and sos3-1. Plant Cell Environ. 28: 1267-1275 (2005).

Kamei CL, Boruc J, Vandepoele K, Van den Daele H, Maes S, Russinova E, Inze D, De Veylder L. The PRA1 gene family in Arabidopsis. Plant Physiol. 147: 1735-1749 (2008).

Kamigaki A, Mano S, Terauchi K, Nishi Y, Tachibe-Kinoshita Y, Nito K, Kondo M, Hayashi M, Nishimura M, Esaka M. Identification of peroxisomal targeting signal of pumpkin catalase and the binding analysis with PTS1 receptor. Plant J. 33: 161-175 (2003).

Kaminuma E, Heida N, Tsumoto Y, Yamamoto N, Goto N, Okamoto N, Konagaya A, Matsui M, Toyoda T. Automatic quantification of morphological traits via three-dimensional measurement of Arabidopsis. Plant J. 38: 358-365 (2004).

Kaminuma E, Yoshizumi T, Wada T, Matsui M, Toyoda T. Quantitative analysis of heterogeneous spatial distribution of Arabidopsis leaf trichomes using micro X-ray computed tomography. Plant J. 56: 470-482 (2008).

Kamiya N, Itoh JI, Morikami A, Nagato Y, Matsuoka M. The SCARECROW gene's role in asymmetric cell divisions in rice plants. Plant J. 36: 45-54 (2003).

Kamiya N, Nagasaki H, Morikami A, Sato Y, Matsuoka M. Isolation and characterization of a rice WUSCHEL-type homeobox gene that is specifically expressed in the central cells of a quiescent center in the root apical meristem. Plant J. 35: 429-441 (2003).

Kamiya Y, Garcia-Martinez JL. Regulation of gibberellin biosynthesis by light. Curr. Opin. Plant Biol. 2: 398-403 (1999).

Kamphausen T, Fanghanel J, Neumann D, Schulz B, Rahfeld JU. Characterization of Arabidopsis thaliana AtFKBP42 that is membrane-bound and interacts with Hsp90. Plant J. 32: 263-276 (2002).

Kamruzzaman Munshi M, Kobayashi Y, Shikanai T. Identification of a novel protein, CRR7, required for the stabilization of the chloroplast NAD(P)H dehydrogenase complex in Arabidopsis. Plant J. 44: 1036-1044 (2005).

Kanamaru K, Wang R, Su W, Crawford NM. Ser-534 in the hinge 1 region of Arabidopsis nitrate reductase is conditionally required for binding of 14-3-3 proteins and in vitro inhibition. J. Biol. Chem. 274: 4160-4165 (1999).

Kanaoka MM, Pillitteri LJ, Fujii H, Yoshida Y, Bogenschutz NL, Takabayashi J, Zhu JK, Torii KU. SCREAM/ICE1 and SCREAM2 specify three cell-state transitional steps leading to Arabidopsis stomatal differentiation. Plant Cell 20: 1775-1785 (2008).

Kanaoka MM, Urban S, Freeman M, Okada K. An Arabidopsis Rhomboid homolog is an intramembrane protease in plants. FEBS Lett. 579: 5723-5728 (2005).

Kandasamy MK, Deal RB, McKinney EC, Meagher RB. Silencing the nuclear actin-related protein AtARP4 in Arabidopsis has multiple effects on plant development, including early flowering and delayed floral senescence. Plant J. 41: 845-858 (2005).

Kandasamy MK, McKinney EC, Deal RB, Meagher RB. Arabidopsis ARP7 is an essential actin-related protein required for normal embryogenesis, plant architecture, and floral organ abscission. Plant Physiol. 138: 2019-2032 (2005).

Kandasamy MK, McKinney EC, Meagher RB. ACTIN-RELATED PROTEIN8 encodes an F-box protein localized to the nucleolus in Arabidopsis. Plant Cell Physiol. 49: 858-863 (2008).

Kandasamy MK, McKinney EC, Meagher RB. A single vegetative actin isovariant overexpressed under the control of multiple regulatory sequences is sufficient for normal Arabidopsis development. Plant Cell 21: 701-718 (2009).

Kandasamy MK, McKinney EC, Meagher RB. Cell cycle-dependent association of Arabidopsis actin-related proteins AtARP4 and AtARP7 with the nucleus. Plant J. 33: 939-948 (2003).

Kandel S, Sauveplane V, Compagnon V, Franke R, Millet Y, Schreiber L, Werck-Reichhart D, Pinot F. Characterization of a methyl jasmonate and wounding-responsive cytochrome P450 of Arabidopsis thaliana catalyzing dicarboxylic fatty acid formation in vitro. FEBS J. 274: 5116-5127 (2007).

Kandlbinder A, Finkemeier I, Wormuth D, Hanitzsch M, Dietz KJ. The antioxidant status of photosynthesizing leaves under nutrient deficiency: redox regulation, gene expression and antioxidant activity in Arabidopsis thaliana. Physiol. Plant. 120: 63-73 (2004).

Kanervo E, Spetea C, Nishiyama Y, Murata N, Andersson B, Aro EM. Dissecting a cyanobacterial proteolytic system: efficiency in inducing degradation of the D1 protein of photosystem II in cyanobacteria and plants. Biochim. Biophys. Acta 1607: 131-140 (2003).

Kaneyasu T, Kobayashi A, Nakayama M, Fujii N, Takahashi H, Miyazawa Y. Auxin response, but not its polar transport, plays a role in hydrotropism of Arabidopsis roots. J. Exp. Bot. 58: 1143-1150 (2007).

Kang BH, Busse JS, Bednarek SY. Members of the Arabidopsis dynamin-like gene family, ADL1, are essential for plant cytokinesis and polarized cell growth. Plant Cell 15: 899-913 (2003).

Kang BH, Rancour DM, Bednarek SY. The dynamin-like protein ADL1C is essential for plasma membrane maintenance during pollen maturation. Plant J. 35: 1-15 (2003).

Kang HG, Foley RC, Onate-Sanchez L, Lin C, Singh KB. Target genes for OBP3, a Dof transcription factor, include novel basic helix-loop-helix domain proteins inducible by salicylic acid. Plant J. 35: 362-372 (2003).

Kang HG, Klessig DF. Salicylic acid-inducible Arabidopsis CK2-like activity phosphorylates TGA2. Plant Mol. Biol. 57: 541-557 (2005).

Kang J, Dengler N. Cell cycling frequency and expression of the homeobox gene ATHB-8 during leaf vein development in Arabidopsis. Planta 216: 212-219 (2002).

Kang J, Mehta S, Turano FJ. The putative glutamate receptor 1.1 (AtGLR1.1) in Arabidopsis thaliana regulates abscisic acid biosynthesis and signaling to control development and water loss. Plant Cell Physiol. 45: 1380-1389 (2004).

Kang J, Mizukami Y, Wang H, Fowke L, Dengler NG. Modification of cell proliferation patterns alters leaf vein architecture in Arabidopsis thaliana. Planta 226: 1207-1218 (2007).

Kang J, Zhang G, Bonnema G, Fang Z, Wang X. Global analysis of gene expression in flower buds of Ms-cd1 Brassica oleracea conferring male sterility by using an Arabidopsis microarray. Plant Mol. Biol. 66: 177-192 (2008).

Kang JY, Choi HI, Im MY, Kim SY. Arabidopsis basic leucine zipper proteins that mediate stress-responsive abscisic acid signaling. Plant Cell 14: 343-357 (2002).

Kang K, Back K. Production of phenylpropanoid amides in recombinant Escherichia coli. Metab. Eng. 11: 64-68 (2009).

Kang L, Wang YS, Uppalapati SR, Wang K, Tang Y, Vadapalli V, Venables BJ, Chapman KD, Blancaflor EB, Mysore KS. Overexpression of a fatty acid amide hydrolase compromises innate immunity in Arabidopsis. Plant J. 56: 336-349 (2008).

Kang S, Kim HB, Lee H, Choi JY, Heu S, Oh CJ, Kwon SI, An CS. Overexpression in Arabidopsis of a plasma membrane-targeting glutamate receptor from small radish increases glutamate-mediated Ca2+ influx and delays fungal infection. Mol. Cells 21: 418-427 (2006).

Kang SG, Jin JB, Piao HL, Pih KT, Jang HJ, Lim JH, Hwang I. Molecular cloning of an Arabidopsis cDNA encoding a dynamin-like protein that is localized to plastids. Plant Mol. Biol. 38: 437-447 (1998).

Kang X, Chong J, Ni M. HYPERSENSITIVE TO RED AND BLUE 1, a ZZ-type zinc finger protein, regulates phytochrome B-mediated red and cryptochrome-mediated blue light responses. Plant Cell 17: 822-835 (2005).

Kang X, Ni M. Arabidopsis SHORT HYPOCOTYL UNDER BLUE1 contains SPX and EXS domains and acts in cryptochrome signaling. Plant Cell 18: 921-934 (2006).

Kang YH, Kirik V, Hulskamp M, Nam KH, Hagely K, Lee MM, Schiefelbein J. The MYB23 gene provides a positive feedback loop for cell fate specification in the Arabidopsis root epidermis. Plant Cell 21: 1080-1094 (2009).

Kang YW, Kim RN, Cho HS, Kim WT, Choi D, Pai HS. Silencing of a BYPASS1 homolog results in root-independent pleiotrophic developmental defects in Nicotiana benthamiana. Plant Mol. Biol. 68: 423-437 (2008).

Kangasjarvi J, Jaspers P, Kollist H. Signalling and cell death in ozone-exposed plants. Plant Cell Environ. 28: 1021-1036 (2005).

Kangasjärvi S, Nurmi M, Tikkanen M, Aro EM. Cell-specific mechanisms and systemic signalling as emerging themes in light acclimation of C3 plants. Plant Cell Environ. Apr 2 [Epub ahead of print] (2009).

Kannangara R, Branigan C, Liu Y, Penfield T, Rao V, Mouille G, Höfte H, Pauly M, Riechmann JL, Broun P. The transcription factor WIN1/SHN1 regulates cutin biosynthesis in Arabidopsis thaliana. Plant Cell 19: 1278-1294 (2007).

Kanneganti TD, Bai X, Tsai CW, Win J, Meulia T, Goodin M, Kamoun S, Hogenhout SA. A functional genetic assay for nuclear trafficking in plants. Plant J. 50: 149-158 (2007).

Kanrar S, Bhattacharya M, Arthur B, Courtier J, Smith HM. Regulatory networks that function to specify flower meristems require the function of homeobox genes PENNYWISE and POUND-FOOLISH in Arabidopsis. Plant J. 54: 924-937 (2008).

Kanrar S, Onguka O, Smith HM. Arabidopsis inflorescence architecture requires the activities of KNOX-BELL homeodomain heterodimers. Planta 224: 1163-1173 (2006).

Kant P, Kant S, Gordon M, Shaked R, Barak S. STRESS RESPONSE SUPPRESSOR1 and STRESS RESPONSE SUPPRESSOR2, two DEAD-box RNA helicases that attenuate Arabidopsis responses to multiple abiotic stresses. Plant Physiol. 145: 814-830 (2007).

Kant S, Bi YM, Weretilnyk E, Barak S, Rothstein SJ. The Arabidopsis halophytic relative, Thellungiella halophila, tolerates nitrogen limiting conditions by maintaining growth, nitrogen uptake and assimilation. Plant Physiol. 147: 1168-1180 (2008).

Kant S, Kant P, Raveh E, Barak S. Evidence that differential gene expression between the halophyte, Thellungiella halophila, and Arabidopsis thaliana is responsible for higher levels of the compatible osmolyte proline and tight control of Na+ uptake in T. halophila. Plant Cell Environ. 29: 1220-1234 (2006).

Kanter U, Usadel B, Guerineau F, Li Y, Pauly M, Tenhaken R. The inositol oxygenase gene family of Arabidopsis is involved in the biosynthesis of nucleotide sugar precursors for cell-wall matrix polysaccharides. Planta 221: 243-254 (2005).

Kanwischer M, Porfirova S, Bergmuller E, Dormann P. Alterations in tocopherol cyclase activity in transgenic and mutant plants of Arabidopsis affect tocopherol content, tocopherol composition, and oxidative stress. Plant Physiol. 137: 713-723 (2005).

Kanyuka K, Praekelt U, Franklin KA, Billingham OE, Hooley R, Whitelam GC, Halliday KJ. Mutations in the huge Arabidopsis gene BIG affect a range of hormone and light responses. Plant J. 35: 57-70 (2003).

Kaothien P, Ok SH, Shuai B, Wengier D, Cotter R, Kelley D, Kiriakopolos S, Muschietti J, McCormick S. Kinase partner protein interacts with the LePRK1 and LePRK2 receptor kinases and plays a role in polarized pollen tube growth. Plant J. 42: 492-503 (2005).

Kaplan B, Davydov O, Knight H, Galon Y, Knight MR, Fluhr R, Fromm H. Rapid transcriptome changes induced by cytosolic Ca2+ transients reveal ABRE-related sequences as Ca2+-responsive cis elements in Arabidopsis. Plant Cell 18: 2733-2748 (2006).

Kaplan CP, Tugal HB, Baker A. Isolation of a cDNA encoding an Arabidopsis galactokinase by functional expression in yeast. Plant Mol. Biol. 34: 497-506 (1997).

Kaplan F, Guy CL. RNA interference of Arabidopsis beta-amylase8 prevents maltose accumulation upon cold shock and increases sensitivity of PSII photochemical efficiency to freezing stress. Plant J. 44: 730-743 (2005).

Kaplan F, Kopka J, Haskell DW, Zhao W, Schiller KC, Gatzke N, Sung DY, Guy CL. Exploring the temperature-stress metabolome of Arabidopsis. Plant Physiol. 136: 4159-4168 (2004).

Kaplan F, Kopka J, Sung DY, Zhao W, Popp M, Porat R, Guy CL. Transcript and metabolite profiling during cold acclimation of Arabidopsis reveals an intricate relationship of cold-regulated gene expression with modifications in metabolite content. Plant J. 50: 967-981 (2007).

Kaplan F, Sung DY, Guy CL. Roles of beta-amylase and starch breakdown during temperatures stress. Physiol. Plant. 126: 120-128 (2006).

Kapoor A, Agius F, Zhu JK. Preventing transcriptional gene silencing by active DNA demethylation. FEBS Lett. 579: 5889-5898 (2005).

Kapoor M, Baba A, Kubo K, Shibuya K, Matsui K, Tanaka Y, Takatsuji H. Transgene-triggered, epigenetically regulated ectopic expression of a flower homeotic gene pMADS3 in Petunia. Plant J. 43: 649-661 (2005).

Kapoor M, Tsuda S, Tanaka Y, Mayama T, Okuyama Y, Tsuchimoto S, Takatsuji H. Role of petunia pMADS3 in determination of floral organ and meristem identity, as revealed by its loss of function. Plant J. 32: 115-127 (2002).

Kapranov P, de Bruijn FJ, Szczyglowski K. Novel, highly expressed late nodulin gene (LjNOD16) from Lotus japonicus. Plant Physiol. 113: 1081-1090 (1997).

Kapri-Pardes E, Naveh L, Adam Z. The thylakoid lumen protease Deg1 is involved in the repair of photosystem II from photoinhibition in Arabidopsis. Plant Cell 19: 1039-1047 (2007).

Karaba A, Dixit S, Greco R, Aharoni A, Trijatmiko KR, Marsch-Martinez N, Krishnan A, Nataraja KN, Udayakumar M, Pereira A. Improvement of water use efficiency in rice by expression of HARDY, an Arabidopsis drought and salt tolerance gene. Proc. Natl. Acad. Sci. U.S.A. 104: 15270-15275 (2007).

Kardailsky I, Shukla VK, Ahn JH, Dagenais N, Christensen SK, Nguyen JT, Chory J, Harrison MJ, Weigel D. Activation tagging of the floral inducer FT. Science 286: 1962-1965 (1999).

Karim S, Aronsson H, Ericson H, Pirhonen M, Leyman B, Welin B, Mantyla E, Palva ET, Van Dijck P, Holmstrom KO. Improved drought tolerance without undesired side effects in transgenic plants producing trehalose. Plant Mol. Biol. 64: 371-386 (2007).

Karim S, Lundh D, Holmstrom KO, Mandal A, Pirhonen M. Structural and functional characterization of AtPTR3, a stress-induced peptide transporter of Arabidopsis. J. Mol. Model. (Online) 11: 226-236 (2005).

Karim S, Lundh D, Holmstrom KO, Mandal A, Pirhonen M. Structural and functional characterization of AtPTR3, a stress-induced peptide transporter of Arabidopsis. J. Mol. Model. 11: 226-236 (2005).

Kariola T, Brader G, Helenius E, Li J, Heino P, Palva ET. EARLY RESPONSIVE TO DEHYDRATION 15. A negative regulator of ABA-responses in Arabidopsis. Plant Physiol. 142: 1559-1573 (2006).

Kariola T, Brader G, Li J, Palva ET. Chlorophyllase 1, a damage control enzyme, affects the balance between defense pathways in plants. Plant Cell 17: 282-294 (2005).

Karlova R, Boeren S, Russinova E, Aker J, Vervoort J, de Vries S. The Arabidopsis SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE1 protein complex includes BRASSINOSTEROID-INSENSITIVE1. Plant Cell 18: 626-638 (2006).

Karnik SK, Trelease RN. Arabidopsis peroxin 16 trafficks through the ER and an intermediate compartment to pre-existing peroxisomes via overlapping molecular targeting signals. J. Exp. Bot. 58: 1677-1693 (2007).

Karnik SK, Trelease RN. Arabidopsis peroxin 16 coexists at steady state in peroxisomes and endoplasmic reticulum. Plant Physiol. 138: 1967-1981 (2005).

Karniol B, Malec P, Chamovitz DA. Arabidopsis FUSCA5 encodes a novel phosphoprotein that is a component of the COP9 complex. Plant Cell 11: 839-848 (1999).

Karpinski S, Escobar C, Karpinska B, Creissen G, Mullineaux PM. Photosynthetic electron transport regulates the expression of cytosolic ascorbate peroxidase genes in Arabidopsis during excess light stress. Plant Cell 9: 627-640 (1997).

Kars I, Krooshof GH, Wagemakers L, Joosten R, Benen JA, van Kan JA. Necrotizing activity of five Botrytis cinerea endopolygalacturonases produced in Pichia pastoris. Plant J. 43: 213-225 (2005).

Karthikeyan AS, Varadarajan DK, Jain A, Held MA, Carpita NC, Raghothama KG. Phosphate starvation responses are mediated by sugar signaling in Arabidopsis. Planta 225: 907-918 (2007).

Karthikeyan AS, Varadarajan DK, Mukatira UT, D'Urzo MP, Damsz B, Raghothama KG. Regulated expression of Arabidopsis phosphate transporters. Plant Physiol. 130: 221-233 (2002).

Kasahara M, Kagawa T, Sato Y, Kiyosue T, Wada M. Phototropins mediate blue and red light-induced chloroplast movements in Physcomitrella patens. Plant Physiol. 135: 1388-1397 (2004).

Kasahara M, Swartz TE, Olney MA, Onodera A, Mochizuki N, Fukuzawa H, Asamizu E, Tabata S, Kanegae H, Takano M, Christie JM, Nagatani A, Briggs WR. Photochemical properties of the flavin mononucleotide-binding domains of the phototropins from Arabidopsis, rice, and Chlamydomonas reinhardtii. Plant Physiol. 129: 762-773 (2002).

Kasahara RD, Portereiko MF, Sandaklie-Nikolova L, Rabiger DS, Drews GN. MYB98 is required for pollen tube guidance and synergid cell differentiation in Arabidopsis. Plant Cell 17: 2981-2992 (2005).

Kasinathan V, Wingler A. Effect of reduced arginine decarboxylase activity on salt tolerance and on polyamine formation during salt stress in Arabidopsis thaliana. Physiol. Plant. 121: 101-107 (2004).

Kasuga M, Liu Q, Miura S, Yamaguchi-Shinozaki K, Shinozaki K. Improving plant drought, salt, and freezing tolerance by gene transfer of a single stress-inducible transcription factor. Nat. Biotechnol. 17: 287-291 (1999).

Kasukabe Y, He L, Nada K, Misawa S, Ihara I, Tachibana S. Overexpression of spermidine synthase enhances tolerance to multiple environmental stresses and up-regulates the expression of various stress-regulated genes in transgenic Arabidopsis thaliana. Plant Cell Physiol. 45: 712-722 (2004).

Kaszycki P, Gabrys H, Appenroth KJ, Jaglarz A, Sedziwy S, Walczak T, Koloczek H. Exogenously applied sulphate as a tool to investigate transport and reduction of chromate in the duckweed Spirodela polyrhiza. Plant Cell Environ. 28: 260-268 (2005).

Katagiri T, Ishiyama K, Kato T, Tabata S, Kobayashi M, Shinozaki K. An important role of phosphatidic acid in ABA signaling during germination in Arabidopsis thaliana. Plant J. 43: 107-117 (2005).

Katagiri T, Takahashi S, Shinozaki K. Involvement of a novel Arabidopsis phospholipase D, AtPLDdelta, in dehydration-inducible accumulation of phosphatidic acid in stress signalling. Plant J. 26: 595-605 (2001).

Kataoka T, Hayashi N, Yamaya T, Takahashi H. Root-to-shoot transport of sulfate in Arabidopsis. Evidence for the role of SULTR3;5 as a component of low-affinity sulfate transport system in the root vasculature. Plant Physiol. 136: 4198-4204 (2004).

Kataoka T, Watanabe-Takahashi A, Hayashi N, Ohnishi M, Mimura T, Buchner P, Hawkesford MJ, Yamaya T, Takahashi H. Vacuolar sulfate transporters are essential determinants controlling internal distribution of sulfate in Arabidopsis. Plant Cell 16: 2693-2704 (2004).

Katavic V, Reed DW, Taylor DC, Giblin EM, Barton DL, Zou J, Mackenzie SL, Covello PS, Kunst L. Alteration of seed fatty acid composition by an ethyl methanesulfonate-induced mutation in Arabidopsis thaliana affecting diacylglycerol acyltransferase activity. Plant Physiol. 108: 399-409 (1995).

Katayama K, Sakurai I, Wada H. Identification of an Arabidopsis thaliana gene for cardiolipin synthase located in mitochondria. FEBS Lett. 577: 193-198 (2004).

Kater MM, Dreni L, Colombo L. Functional conservation of MADS-box factors controlling floral organ identity in rice and Arabidopsis. J. Exp. Bot. 57: 3433-3444 (2006).

Katiyar-Agarwal S, Agarwal M, Grover A. Heat-tolerant basmati rice engineered by over-expression of hsp101. Plant Mol. Biol. 51: 677-686 (2003).

Kato A, Hayashi M, Nishimura M. Oligomeric proteins containing N-terminal targeting signals are imported into peroxisomes in transgenic Arabidopsis. Plant Cell Physiol. 40: 586-591 (1999).

Kato H, Sutoh K, Minamikawa T. Identification, cDNA cloning and possible roles of seed-specific rice asparaginyl endopeptidase, REP-2. Planta 217: 676-685 (2003).

Kato T, Morita MT, Fukaki H, Yamauchi Y, Uehara M, Niihama M, Tasaka M. SGR2, a phospholipase-like protein, and ZIG/SGR4, a SNARE, are involved in the shoot gravitropism of Arabidopsis. Plant Cell 14: 33-46 (2002).

Kato Y, Miura E, Matsushima R, Sakamoto W. White leaf sectors in yellow variegated2 are formed by viable cells with undifferentiated plastids. Plant Physiol. 144: 952-960 (2007).

Kato Y, Miwa K, Takano J, Wada M, Fujiwara T. Highly boron deficiency tolerant plants generated by enhanced expression of NIP5;1, a boric acid channel. Plant Cell Physiol. 50: 58-66 (2009).

Kato-Noguchi H, Takaoka T, Izumori K. Psicose inhibits lettuce root growth via a hexokinase-independent pathway. Physiol. Plant. 125: 293-298 (2005).

Katoh A, Uenohara K, Akita M, Hashimoto T. Early steps in the biosynthesis of NAD in Arabidopsis start with aspartate and occur in the plastid. Plant Physiol. 141: 851-857 (2006).

Katou S, Yoshioka H, Kawakita K, Rowland O, Jones JD, Mori H, Doke N. Involvement of PPS3 phosphorylated by elicitor-responsive mitogen-activated protein kinases in the regulation of plant cell death. Plant Physiol. 139: 1914-1926 (2005).

Katsuhara M, Otsuka T, Ezaki B. Salt stress-induced lipid peroxidation is reduced by glutathione S-transferase, but this reduction of lipid peroxides is not enough for a recovery of root growth in Arabidopsis. Plant Sci. 169: 369-373 (2005).

Katz A, Oliva M, Mosquna A, Hakim O, Ohad N. FIE and CURLY LEAF polycomb proteins interact in the regulation of homeobox gene expression during sporophyte development. Plant J. 37: 707-719 (2004).

Katz YS, Galili G, Amir R. Regulatory role of cystathionine-gamma-synthase and de novo synthesis of methionine in ethylene production during tomato fruit ripening. Plant Mol. Biol. 61: 255-268 (2006).

Kaup MT, Froese CD, Thompson JE. A role for diacylglycerol acyltransferase during leaf senescence. Plant Physiol. 129: 1616-1626 (2002).

Kaur J, Sebastian J, Siddiqi I. The Arabidopsis-mei2-like genes play a role in meiosis and vegetative growth in Arabidopsis. Plant Cell 18: 545-559 (2006).

Kavakli IH, Kato C, Choi SB, Kim KH, Salamone PR, Ito H, Okita TW. Generation, characterization, and heterologous expression of wild-type and up-regulated forms of Arabidopsis thaliana leaf ADP-glucose pyrophosphorylase. Planta 215: 430-439 (2002).

Kawachi T, Sueyoshi K, Nakajima A, Yamagata H, Sugimoto T, Oji Y. Expression of asparagine synthetase in rice (Oryza sativa) roots in response to nitrogen. Physiol. Plant. 114: 41-46 (2002).

Kawaguchi R, Girke T, Bray EA, Bailey-Serres J. Differential mRNA translation contributes to gene regulation under non-stress and dehydration stress conditions in Arabidopsis thaliana. Plant J. 38: 823-839 (2004).

Kawai-Yamada M, Ohori Y, Uchimiya H. Dissection of Arabidopsis Bax inhibitor-1 suppressing Bax-, hydrogen peroxide-, and salicylic acid-induced cell death. Plant Cell 16: 21-32 (2004).

Kawalleck P, Plesch G, Hahlbrock K, Somssich IE. Induction by fungal elicitor of S-adenosyl-L-methionine synthetase and S-adenosyl-L-homocysteine hydrolase mRNAs in cultured cells and leaves of Petroselinum crispum. Proc. Natl. Acad. Sci. U.S.A. 89: 4713-4717 (1992).

Kawamura E, Himmelspach R, Rashbrooke MC, Whittington AT, Gale KR, Collings DA, Wasteneys GO. MICROTUBULE ORGANIZATION 1 regulates structure and function of microtubule arrays during mitosis and cytokinesis in the Arabidopsis root. Plant Physiol. 140: 102-114 (2006).

Kawamura Y, Takenaka S, Hase S, Kubota M, Ichinose Y, Kanayama Y, Nakaho K, Klessig DF, Takahashi H. Enhanced defense responses in Arabidopsis induced by the cell wall protein fractions from Pythium oligandrum require SGT1, RAR1, NPR1 and JAR1. Plant Cell Physiol. 50: 924-934 (2009).

Kawamura Y, Uemura M. Mass spectrometric approach for identifying putative plasma membrane proteins of Arabidopsis leaves associated with cold acclimation. Plant J. 36: 141-154 (2003).

Kawasaki T, Nam J, Boyes DC, Holt BF 3rd, Hubert DA, Wiig A, Dangl JL. A duplicated pair of Arabidopsis RING-finger E3 ligases contribute to the RPM1- and RPS2-mediated hypersensitive response. Plant J. 44: 258-270 (2005).

Kawashima CG, Berkowitz O, Hell R, Noji M, Saito K. Characterization and expression analysis of a serine acetyltransferase gene family involved in a key step of the sulfur assimilation pathway in Arabidopsis. Plant Physiol. 137: 220-230 (2005).

Kawashima CG, Yoshimoto N, Maruyama-Nakashita A, Tsuchiya YN, Saito K, Takahashi H, Dalmay T. Sulphur starvation induces the expression of microRNA-395 and one of its target genes but in different cell types. Plant J. 57: 313-321 (2009).

Kaye C, Crawford NM, Malmberg RL. Constitutive non-inducible expression of the Arabidopsis thaliana Nia 2 gene in two nitrate reductase mutants of Nicotiana plumbaginifolia. Plant Mol. Biol. 33: 953-964 (1997).

Kaye C, Neven L, Hofig A, Li QB, Haskell D, Guy C. Characterization of a gene for spinach CAP160 and expression of two spinach cold-acclimation proteins in tobacco. Plant Physiol. 116: 1367-1377 (1998).

Kazama Y, Fujiwara MT, Koizumi A, Nishihara K, Nishiyama R, Kifune E, Abe T, Kawano S. A SUPERMAN-like gene is exclusively expressed in female flowers of the dioecious plant Silene latifolia. Plant Cell Physiol. 50: 1127-1141 (2009).


Ke J, Behal RH, Back SL, Nikolau BJ, Wurtele ES, Oliver DJ. The role of pyruvate dehydrogenase and acetyl-coenzyme A synthetase in fatty acid synthesis in developing Arabidopsis seeds. Plant Physiol. 123: 497-508 (2000).

Ke J, Choi JK, Smith M, Horner HT, Nikolau BJ, Wurtele ES. Structure of the CAC1 gene and in situ characterization of its expression. The Arabidopsis thaliana gene coding for the biotin-containing subunit of the plastidic acetyl-coenzyme A carboxylase. Plant Physiol. 113: 357-365 (1997).

Ke J, Wen TN, Nikolau BJ, Wurtele ES. Coordinate regulation of the nuclear and plastidic genes coding for the subunits of the heteromeric acetyl-coenzyme A carboxylase. Plant Physiol. 122: 1057-1072 (2000).

Keates SE, Kostman TA, Anderson JD, Bailey BA. Altered gene expression in three plant species in response to treatment with nep1, a fungal protein that causes necrosis. Plant Physiol. 132: 1610-1622 (2003).

Kebeish R, Niessen M, Thiruveedhi K, Bari R, Hirsch HJ, Rosenkranz R, Stabler N, Schonfeld B, Kreuzaler F, Peterhansel C. Chloroplastic photorespiratory bypass increases photosynthesis and biomass production in Arabidopsis thaliana. Nat. Biotechnol. 25: 593-599 (2007).

Kebrom TH, Brutnell TP. The molecular analysis of the shade avoidance syndrome in the grasses has begun. J. Exp. Bot. 58: 3079-3089 (2007).

Keegstra K, Raikhel N. Plant glycosyltransferases. Curr. Opin. Plant Biol. 4: 219-224 (2001).

Kehoe DM. DNA microarrays for studies of higher plants and other photosynthetic organisms. Trends Plant Sci. 4: 38-41 (1999).

Keith B, Dong XN, Ausubel FM, Fink GR. Differential induction of 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase genes in Arabidopsis thaliana by wounding and pathogenic attack. Proc. Natl. Acad. Sci. U.S.A. 88: 8821-8825 (1991).

Keller CP, Stahlberg R, Barkawi LS, Cohen JD. Long-term inhibition by auxin of leaf blade expansion in bean and Arabidopsis. Plant Physiol. 134: 1217-1226 (2004).

Keller T, Abbott J, Moritz T, Doerner P. Arabidopsis REGULATOR OF AXILLARY MERISTEMS1 controls a leaf axil stem cell niche and modulates vegetative development. Plant Cell 18: 598-611 (2006).

Keller T, Damude HG, Werner D, Doerner P, Dixon RA, Lamb C. A plant homolog of the neutrophil NADPH oxidase gp91phox subunit gene encodes a plasma membrane protein with Ca2+ binding motifs. Plant Cell 10: 255-266 (1998).

Kelley DR, Skinner DJ, Gasser CS. Roles of polarity determinants in ovule development. Plant J. 57: 1054-1064 (2009).

Kellogg EA. Progress and challenges in studies of the evolution of development. J. Exp. Bot. 57: 3505-3516 (2006).

Kelly AA, Dormann P. Green light for galactolipid trafficking. Curr. Opin. Plant Biol. 7: 262-269 (2004).

Kelly AA, Froehlich JE, Dormann P. Disruption of the two digalactosyldiacylglycerol synthase genes DGD1 and DGD2 in Arabidopsis reveals the existence of an additional enzyme of galactolipid synthesis. Plant Cell 15: 2694-2706 (2003).

Kendziorek M, Paszkowski A. Properties of serine:glyoxylate aminotransferase purified from Arabidopsis thaliana leaves. Acta Biochim. Biophys. Sin. (Shanghai) 40: 102-110 (2008).

Kenigsbuch D, Tobin EM. A region of the Arabidopis Lhcb1*3 promoter that binds to CA-1 activity is essential for high expression and phytochrome regulation. Plant Physiol. 108: 1023-1027 (1995).

Keogh MR, Courtney PD, Kinney AJ, Dewey RE. Functional characterization of phospholipid N-methyltransferases from Arabidopsis and soybean. J. Biol. Chem. 284: 15439-15447 (2009).

Keren N, Ohkawa H, Welsh EA, Liberton M, Pakrasi HB. Psb29, a conserved 22-kD protein, functions in the biogenesis of photosystem II complexes in Synechocystis and Arabidopsis. Plant Cell 17: 2768-2781 (2005).

Kerk D, Bulgrien J, Smith DW, Barsam B, Veretnik S, Gribskov M. The complement of protein phosphatase catalytic subunits encoded in the genome of Arabidopsis. Plant Physiol. 129: 908-925 (2002).

Kerk D, Bulgrien J, Smith DW, Gribskov M. Arabidopsis proteins containing similarity to the universal stress protein domain of bacteria. Plant Physiol. 131: 1209-1219 (2003).

Kerk D, Conley TR, Rodriguez FA, Tran HT, Nimick M, Muench DG, Moorhead GB. A chloroplast-localized dual-specificity protein phosphatase in Arabidopsis contains a phylogenetically dispersed and ancient carbohydrate-binding domain, which binds the polysaccharide starch. Plant J. 46: 400-413 (2006).

Kerschen A, Napoli CA, Jorgensen RA, Muller AE. Effectiveness of RNA interference in transgenic plants. FEBS Lett. 566: 223-228 (2004).

Kersten B, Burkle L, Kuhn EJ, Giavalisco P, Konthur Z, Lueking A, Walter G, Eickhoff H, Schneider U. Large-scale plant proteomics. Plant Mol. Biol. 48: 133-141 (2002).

Kersten B, Feilner T, Kramer A, Wehrmeyer S, Possling A, Witt I, Zanor MI, Stracke R, Lueking A, Kreutzberger J, Lehrach H, Cahilll DJ. Generation of Arabidopsis protein chips for antibody and serum screening. Plant Mol. Biol. 52: 999-1010 (2003).

Kertbundit S, Linacero R, Rouze P, Galis I, Macas J, Deboeck F, Renckens S, Hernalsteens JP, De Greve H. Analysis of T-DNA-mediated translational beta-glucuronidase gene fusions. Plant Mol. Biol. 36: 205-217 (1998).

Kervinen T, Peltonen S, Teeri TH, Karjalainen R. Differential expression of phenylalanine ammonia-lyase genes in barley induced by fungal infection or elicitors. New Phytol. 139: 293-300 (1998).

Kesarwani M, Yoo J, Dong X. Genetic interactions of TGA transcription factors in the regulation of pathogenesis-related genes and disease resistance in Arabidopsis. Plant Physiol. 144: 336-346 (2007).

Kessler S, Townsley B, Sinha N. L1 division and differentiation patterns influence shoot apical meristem maintenance. Plant Physiol. 141: 1349-1362 (2006).

Ketchum KA, Slayman CW. Isolation of an ion channel gene from Arabidopsis thaliana using the H5 signature sequence from voltage-dependent K+ channels. FEBS Lett. 378: 19-26 (1996).

Ketelaar T, Anthony RG, Hussey PJ. Green fluorescent protein-mTalin causes defects in actin organization and cell expansion in Arabidopsis and inhibits actin depolymerizing factor's actin depolymerizing activity in vitro. Plant Physiol. 136: 3990-3998 (2004).

Ketelaar T, De Ruijter NC, Emons AM. Unstable F-actin specifies the area and microtubule direction of cell expansion in Arabidopsis root hairs. Plant Cell 15: 285-292 (2003).

Ketelaar T, Faivre-Moskalenko C, Esseling JJ, de Ruijter NC, Grierson CS, Dogterom M, Emons AM. Positioning of nuclei in Arabidopsis root hairs: an actin-regulated process of tip growth. Plant Cell 14: 2941-2955 (2002).

Kevei E, Gyula P, Hall A, Kozma-Bognar L, Kim WY, Eriksson ME, Toth R, Hanano S, Feher B, Southern MM, Bastow RM, Viczian A, Hibberd V, Davis SJ, Somers DE, Nagy F, Millar AJ. Forward genetic analysis of the circadian clock separates the multiple functions of ZEITLUPE. Plant Physiol. 140: 933-945 (2006).

Khaled AS, LeDeunff E, Ingram G, Meeley R, Rogowsky PM. Dividing maize tissues show preferential expression of two novel receptor-like cytoplasmic protein kinases. Plant Sci. 169: 587-598 (2005).

Khaled AS, Vernoud V, Ingram GC, Perez P, Sarda X, Rogowsky PM. Engrailed-ZmOCL1 fusions cause a transient reduction of kernel size in maize. Plant Mol. Biol. 58: 123-139 (2005).

Khan JA, Wang Q, Sjolund RD, Schulz A, Thompson GA. An early nodulin-like protein accumulates in the sieve element plasma membrane of Arabidopsis. Plant Physiol. 143: 1576-1589 (2007).

Khan MS. Engineering photorespiration in chloroplasts: a novel strategy for increasing biomass production. Trends Biotechnol. 25: 437-440 (2007).

Khanna R, Huq E, Kikis EA, Al-Sady B, Lanzatella C, Quail PH. A novel molecular recognition motif necessary for targeting photoactivated phytochrome signaling to specific basic helix-loop-helix transcription factors. Plant Cell 16: 3033-3044 (2004).

Khanna R, Shen Y, Toledo-Ortiz G, Kikis EA, Johannesson H, Hwang YS, Quail PH. Functional profiling reveals that only a small number of phytochrome-regulated early-response genes in Arabidopsis are necessary for optimal deetiolation. Plant Cell 18: 2157-2171 (2006).

Khodakovskaya M, Li Y, Li J, Vankova R, Malbeck J, McAvoy R. Effects of cor15a-IPT gene expression on leaf senescence in transgenic Petunia x hybrida and Dendranthema x grandiflorum. J. Exp. Bot. 56: 1165-1175 (2005).

Khodakovskaya M, McAvoy R, Peters J, Wu H, Li Y. Enhanced cold tolerance in transgenic tobacco expressing a chloroplast omega-3 fatty acid desaturase gene under the control of a cold-inducible promoter. Planta 223: 1090-1100 (2006).

Khraiwesh B, Ossowski S, Weigel D, Reski R, Frank W. Specific gene silencing by artificial microRNAs in Physcomitrella patens: an alternative to targeted gene knockouts. Plant Physiol. 148: 684-693 (2008).

Kieber JJ. The ethylene response pathway in Arabidopsis. Annu. Rev. Plant Physiol. Plant Mol. Biol. 48: 277-296 (1997).

Kieber JJ, Rothenberg M, Roman G, Feldmann KA, Ecker JR. CTR1, a negative regulator of the ethylene response pathway in Arabidopsis, encodes a member of the raf family of protein kinases. Cell 72: 427-441 (1993).

Kiefer IW, Slusarenko AJ. The pattern of systemic acquired resistance induction within the Arabidopsis rosette in relation to the pattern of translocation. Plant Physiol. 132: 840-847 (2003).

Kieffer M, Stern Y, Cook H, Clerici E, Maulbetsch C, Laux T, Davies B. Analysis of the transcription factor WUSCHEL and its functional homologue in Antirrhinum reveals a potential mechanism for their roles in meristem maintenance. Plant Cell 18: 560-573 (2006).

Kiegle E, Moore CA, Haseloff J, Tester MA, Knight MR. Cell-type-specific calcium responses to drought, salt and cold in the Arabidopsis root. Plant J. 23: 267-278 (2000).

Kienow L, Schneider K, Bartsch M, Stuible HP, Weng H, Miersch O, Wasternack C, Kombrink E. Jasmonates meet fatty acids: functional analysis of a new acyl-coenzyme A synthetase family from Arabidopsis thaliana. J. Exp. Bot. 59: 403-419 (2008).

Kierzkowski D, Kmieciak M, Piontek P, Wojtaszek P, Szweykowska-Kulinska Z, Jarmolowski A. The Arabidopsis CBP20 targets the cap-binding complex to the nucleus, and is stabilized by CBP80. Plant J. 59: 814-825 (2009).

Kikis EA, Khanna R, Quail PH. ELF4 is a phytochrome-regulated component of a negative-feedback loop involving the central oscillator components CCA1 and LHY. Plant J. 44: 300-313 (2005).

Kikuchi S, Satoh K, Nagata T, Kawagashira N, Doi K, Kishimoto N, Yazaki J,. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science 301: 376-379 (2003).

Kilian J, Whitehead D, Horak J, Wanke D, Weinl S, Batistic O, D'Angelo C, Bornberg-Bauer E, Kudla J, Harter K. The AtGenExpress global stress expression data set: protocols, evaluation and model data analysis of UV-B light, drought and cold stress responses. Plant J. 50: 347-363 (2007).

Kim BG, Waadt R, Cheong YH, Pandey GK, Dominguez-Solis JR, Schültke S, Lee SC, Kudla J, Luan S. The calcium sensor CBL10 mediates salt tolerance by regulating ion homeostasis in Arabidopsis. Plant J. 52: 473-484 (2007).

Kim BH, Schoffl F. Interaction between Arabidopsis heat shock transcription factor 1 and 70 kDa heat shock proteins. J. Exp. Bot. 53: 371-375 (2002).

Kim BH, von Arnim AG. The early dark-response in Arabidopsis thaliana revealed by cDNA microarray analysis. Plant Mol. Biol. 60: 321-342 (2006).

Kim BH, von Arnim AG. FIERY1 regulates light-mediated repression of cell elongation and flowering time via its 3'(2'),5'-bisphosphate nucleotidase activity. Plant J. 58: 208-219 (2009).

Kim C, Apel K. Substrate-dependent and organ-specific chloroplast protein import in planta. Plant Cell 16: 88-98 (2004).

Kim C, Ham H, Apel K. Multiplicity of different cell- and organ-specific import routes for the NADPH-protochlorophyllide oxidoreductases A and B in plastids of Arabidopsis seedlings. Plant J. 42: 329-340 (2005).

Kim CH, Jun SS, Hong YN. GmNiR-1, a soybean nitrite reductase gene that is regulated by nitrate and light. Aust. J. Plant Physiol. 28: 1031-1038 (2001).

Kim CM, Park SH, Je BI, Park SH, Park SJ, Piao HL, Eun MY, Dolan L, Han CD. OsCSLD1, a cellulose synthase-like D1 gene, is required for root hair morphogenesis in rice. Plant Physiol. 143: 1220-1230 (2007).

Kim D, Gustin JL, Lahner B, Persans MW, Baek D, Yun DJ, Salt DE. The plant CDF family member TgMTP1 from the Ni/Zn hyperaccumulator Thlaspi goesingense acts to enhance efflux of Zn at the plasma membrane when expressed in Saccharomyces cerevisiae. Plant J. 39: 237-251 (2004).

Kim DH, Kang JG, Yang SS, Chung KS, Song PS, Park CM. A phytochrome-associated protein phosphatase 2A modulates light signals in flowering time control in Arabidopsis. Plant Cell 14: 3043-3056 (2002).

Kim DW, Lee SH, Choi SB, Won SK, Heo YK, Cho M, Park YI, Cho HT. Functional conservation of a root hair cell-specific cis-element in angiosperms with different root hair distribution patterns. Plant Cell 18: 2958-2970 (2006).

Kim DY, Bovet L, Kushnir S, Noh EW, Martinoia E, Lee Y. AtATM3 is involved in heavy metal resistance in Arabidopsis. Plant Physiol. 140: 922-932 (2006).

Kim DY, Bovet L, Maeshima M, Martinoia E, Lee Y. The ABC transporter AtPDR8 is a cadmium extrusion pump conferring heavy metal resistance. Plant J. 50: 207-218 (2007).

Kim EH, Kim YS, Park SH, Koo YJ, Choi YD, Chung YY, Lee IJ, Kim JK. Methyl jasmonate reduces grain yield by mediating stress signals to alter spikelet development in rice. Plant Physiol. 149: 1751-1760 (2009).

Kim EJ, Kwak JM, Uozumi N, Schroeder JI. AtKUP1: an Arabidopsis gene encoding high-affinity potassium transport activity. Plant Cell 10: 51-62 (1998).

Kim GT, Fujioka S, Kozuka T, Tax FE, Takatsuto S, Yoshida S, Tsukaya H. CYP90C1 and CYP90D1 are involved in different steps in the brassinosteroid biosynthesis pathway in Arabidopsis thaliana. Plant J. 41: 710-721 (2005).

Kim H, Hirai MY, Hayashi H, Chino M, Naito S, Fujiwara T. Role of O-acetyl-L-serine in the coordinated regulation of the expression of a soybean seed storage-protein gene by sulfur and nitrogen nutrition. Planta 209: 282-289 (1999).

Kim H, Park M, Kim SJ, Hwang I. Actin filaments play a critical role in vacuolar trafficking at the Golgi complex in plant cells. Plant Cell 17: 888-902 (2005).

Kim HB, Kwon M, Ryu H, Fujioka S, Takatsuto S, Yoshida S, An CS, Lee I, Hwang I, Choe S. The regulation of DWARF4 expression is likely a critical mechanism in maintaining the homeostasis of bioactive brassinosteroids in Arabidopsis thaliana. Plant Physiol. 140: 548-557 (2006).

Kim HB, Schaller H, Goh CH, Kwon M, Choe S, An CS, Durst F, Feldmann KA, Feyereisen R. Arabidopsis cyp51 mutant shows postembryonic seedling lethality associated with lack of membrane integrity. Plant Physiol. 138: 2033-2047 (2005).

Kim HJ, Bracey MH, Bartlett SG. Nucleotide sequence of a gene encoding carbonic anhydrase in Arabidopsis thaliana. Plant Physiol. 105: 449 (1994).

Kim HJ, Triplett BA. Cotton fiber germin-like protein. I. Molecular cloning and gene expression. Planta 218: 516-524 (2004).

Kim HJ, Yano A, Wada Y, Sano H. Properties of a tobacco DNA methyltransferase, NtMET1 and its involvement in chromatin movement during cell division. Ann. Bot. (Lond.) 99: 845-856 (2007).

Kim HS, Delaney TP. Over-expression of TGA5, which encodes a bZIP transcription factor that interacts with NIM1/NPR1, confers SAR-independent resistance in Arabidopsis thaliana to Peronospora parasitica. Plant J. 32: 151-163 (2002).

Kim HS, Park BO, Yoo JH, Jung MS, Lee SM, Han HJ, Kim KE, Kim SH, Lim CO, Yun DJ, Lee SY, Chung WS. Identification of a calmodulin-binding NAC protein as a transcriptional repressor in Arabidopsis. J. Biol. Chem. 282: 36292-36302 (2007).

Kim HU, Huang AH. Plastid lysophosphatidyl acyltransferase is essential for embryo development in Arabidopsis. Plant Physiol. 134: 1206-1216 (2004).

Kim HU, Li Y, Huang AH. Ubiquitous and endoplasmic reticulum-located lysophosphatidyl acyltransferase, LPAT2, is essential for female but not male gametophyte development in Arabidopsis. Plant Cell 17: 1073-1089 (2005).

Kim HU, van Oostende C, Basset GJ, Browse J. The AAE14 gene encodes the Arabidopsis O-succinylbenzoyl-CoA ligase that is essential for phylloquinone synthesis and photosystem-I function. Plant J. 54: 272-283 (2008).

Kim I, Zambryski PC. Cell-to-cell communication via plasmodesmata during Arabidopsis embryogenesis. Curr. Opin. Plant Biol. 8: 593-599 (2005).

Kim J, Jung JH, Reyes JL, Kim YS, Kim SY, Chung KS, Kim JA, Lee M, Lee Y, Narry Kim V, Chua NH, Park CM. microRNA-directed cleavage of ATHB15 mRNA regulates vascular development in Arabidopsis inflorescence stems. Plant J. 42: 84-94 (2005).

Kim J, Lee M, Chalam R, Martin MN, Leustek T, Boerjan W. Constitutive overexpression of cystathionine gamma-synthase in Arabidopsis leads to accumulation of soluble methionine and S-methylmethionine. Plant Physiol. 128: 95-107 (2002).

Kim J, Leustek T. Repression of cystathionine gamma-synthase in Arabidopsis thaliana produces partial methionine auxotrophy and developmental abnormalities. Plant Sci. 151: 9-18 (2000).

Kim J, Leustek T. Cloning and analysis of the gene for cystathionine gamma-synthase from Arabidopsis thaliana. Plant Mol. Biol. 32: 1117-1124 (1996).

Kim J, Smith JJ, Tian L, Dellapenna D. The evolution and function of carotenoid hydroxylases in Arabidopsis. Plant Cell Physiol. 50: 463-479 (2009).

Kim JC, Lee SH, Cheong YH, Yoo CM, Lee SI, Chun HJ, Yun DJ, Hong JC, Lee SY, Lim CO, Cho MJ. A novel cold-inducible zinc finger protein from soybean, SCOF-1, enhances cold tolerance in transgenic plants. Plant J. 25: 247-259 (2001).

Kim JH, Choi D, Kende H. The AtGRF family of putative transcription factors is involved in leaf and cotyledon growth in Arabidopsis. Plant J. 36: 94-104 (2003).

Kim JH, Durrett TP, Last RL, Jander G. Characterization of the Arabidopsis TU8 glucosinolate mutation, an allele of TERMINAL FLOWER2. Plant Mol. Biol. 54: 671-682 (2004).

Kim JH, Jander G. Myzus persicae (green peach aphid) feeding on Arabidopsis induces the formation of a deterrent indole glucosinolate. Plant J. 49: 1008-1019 (2007).

Kim JH, Lee BW, Schroeder FC, Jander G. Identification of indole glucosinolate breakdown products with antifeedant effects on Myzus persicae (green peach aphid). Plant J. 54: 1015-1026 (2008).

Kim JH, Moon YR, Kim JS, Oh MH, Lee JW, Chung BY. Transcriptomic profile of Arabidopsis rosette leaves during the reproductive stage after exposure to ionizing radiation. Radiat. Res. 168: 267-280 (2007).

Kim JI, Shen Y, Han YJ, Park JE, Kirchenbauer D, Soh MS, Nagy F, Schafer E, Song PS. Phytochrome phosphorylation modulates light signaling by influencing the protein-protein interaction. Plant Cell 16: 2629-2640 (2004).

Kim JK, Bamba T, Harada K, Fukusaki E, Kobayashi A. Time-course metabolic profiling in Arabidopsis thaliana cell cultures after salt stress treatment. J. Exp. Bot. 58: 415-424 (2007).

Kim JM, To TK, Ishida J, Morosawa T, Kawashima M, Matsui A, Toyoda T, Kimura H, Shinozaki K, Seki M. Alterations of lysine modifications on histone H3 N-tail under drought stress conditions in Arabidopsis thaliana. Plant Cell Physiol. 49: 1580-1588 (2008).

Kim JS, Jung HJ, Lee HJ, Kim KA, Goh CH, Woo Y, Oh SH, Han YS, Kang H. Glycine-rich RNA-binding protein7 affects abiotic stress responses by regulating stomata opening and closing in Arabidopsis thaliana. Plant J. 55: 455-466 (2008).

Kim JS, Kim KA, Oh TR, Park CM, Kang H. Functional characterization of DEAD-box RNA helicases in Arabidopsis thaliana under abiotic stress conditions. Plant Cell Physiol. 49: 1563-1571 (2008).

Kim JY, Park SJ, Jang B, Jung CH, Ahn SJ, Goh CH, Cho K, Han O, Kang H. Functional characterization of a glycine-rich RNA-binding protein 2 in Arabidopsis thaliana under abiotic stress conditions. Plant J. 50: 439-451 (2007).

Kim K, Portis AR Jr. Temperature dependence of photosynthesis in Arabidopsis plants with modifications in Rubisco activase and membrane fluidity. Plant Cell Physiol. 46: 522-530 (2005).

Kim KC, Fan B, Chen Z. Pathogen-induced Arabidopsis WRKY7 is a transcriptional repressor and enhances plant susceptibility to Pseudomonas syringae. Plant Physiol. 142: 1180-1192 (2006).

Kim KC, Lai Z, Fan B, Chen Z. Arabidopsis WRKY38 and WRKY62 transcription factors interact with histone deacetylase 19 in basal defense. Plant Cell 20: 2357-2371 (2008).

Kim KN, Cheong YH, Grant JJ, Pandey GK, Luan S. CIPK3, a calcium sensor-associated protein kinase that regulates abscisic acid and cold signal transduction in Arabidopsis. Plant Cell 15: 411-423 (2003).

Kim KN, Cheong YH, Gupta R, Luan S. Interaction specificity of Arabidopsis calcineurin B-like calcium sensors and their target kinases. Plant Physiol. 124: 1844-1853 (2000).

Kim KN, Lee JS, Han H, Choi SA, Go SJ, Yoon IS. Isolation and characterization of a novel rice Ca2+-regulated protein kinase gene involved in responses to diverse signals including cold, light, cytokinins, sugars and salts. Plant Mol. Biol. 52: 1191-1202 (2003).

Kim KY, Park SW, Chung YS, Chung CH, Kim JI, Lee JH. Molecular cloning of low-temperature-inducible ribosomal proteins from soybean. J. Exp. Bot. 55: 1153-1155 (2004).

Kim M, Lim JH, Ahn CS, Park K, Kim GT, Kim WT, Pai HS. Mitochondria-associated hexokinases play a role in the control of programmed cell death in Nicotiana benthamiana. Plant Cell 18: 2341-2355 (2006).

Kim MG, Geng X, Lee SY, Mackey D. The Pseudomonas syringae type III effector AvrRpm1 induces significant defenses by activating the Arabidopsis NB-LRR-protein RPS2. Plant J. 57: 645-653 (2009).

Kim MJ, Kim JK, Shin JS, Suh MC. The SebHLH transcription factor mediates trans-activation of the SeFAD2 gene promoter through binding to E- and G-box elements. Plant Mol. Biol. 64: 453-466 (2007).

Kim MK, Jeon JH, Davin LB, Lewis NG. Monolignol radical-radical coupling networks in western red cedar and Arabidopsis and their evolutionary implications. Phytochemistry 61: 311-322 (2002).

Kim S, Choi HI, Ryu HJ, Park JH, Kim MD, Kim SY. ARIA, an Arabidopsis arm repeat protein interacting with a transcriptional regulator of abscisic acid-responsive gene expression, is a novel abscisic acid signaling component. Plant Physiol. 136: 3639-3648 (2004).

Kim S, Choi K, Park C, Hwang HJ, Lee I. SUPPRESSOR OF FRIGIDA4, encoding a C2H2-type zinc finger protein, represses flowering by transcriptional activation of Arabidopsis FLOWERING LOCUS C. Plant Cell 18: 2985-2998 (2006).

Kim S, Kim SJ, Shin YJ, Kang JH, Kim MR, Nam KH, Lee MS, Lee SH, Kim YH, Hong SK, Verma DP, Chun JY, Cheon CI. An atypical soybean leucine-rich repeat receptor-like kinase, GmLRK1, may be involved in the regulation of cell elongation. Planta 229: 811-821 (2009).

Kim S, Koh J, Yoo MJ, Kong H, Hu Y, Ma H, Soltis PS, Soltis DE. Expression of floral MADS-box genes in basal angiosperms: implications for the evolution of floral regulators. Plant J. 43: 724-744 (2005).

Kim S, Takahashi M, Higuchi K, Tsunoda K, Nakanishi H, Yoshimura E, Mori S, Nishizawa NK. Increased nicotianamine biosynthesis confers enhanced tolerance of high levels of metals, in particular nickel, to plants. Plant Cell Physiol. 46: 1809-1818 (2005).

Kim SA, Guerinot ML. Mining iron: iron uptake and transport in plants. FEBS Lett. 581: 2273-2280 (2007).

Kim SA, Punshon T, Lanzirotti A, Li L, Alonso JM, Ecker JR, Kaplan J, Guerinot ML. Localization of iron in Arabidopsis seed requires the vacuolar membrane transporter VIT1. Science 314: 1295-1298 (2006).

Kim SG, Kim SY, Park CM. A membrane-associated NAC transcription factor regulates salt-responsive flowering via FLOWERING LOCUS T in Arabidopsis. Planta 226: 647-654 (2007).

Kim SG, Lee AK, Yoon HK, Park CM. A membrane-bound NAC transcription factor NTL8 regulates gibberellic acid-mediated salt signaling in Arabidopsis seed germination. Plant J. 55: 77-88 (2008).

Kim SH, Grierson D. Subcellular localisation and silencing of ripening-associated membrane protein (TRAMP) in tomato Lycopersicon esculentum Mill.. Plant Sci. 169: 1022-1029 (2005).

Kim SH, Roux SJ. An Arabidopsis Ran-binding protein, AtRanBP1c, is a co-activator of Ran GTPase-activating protein and requires the C-terminus for its cytoplasmic localization. Planta 216: 1047-1052 (2003).

Kim SJ, Moon J, Lee I, Maeng J, Kim SR. Molecular cloning and expression analysis of a CONSTANS homologue, PnCOL1, from Pharbitis nil. J. Exp. Bot. 54: 1879-1887 (2003).

Kim SM, Kim YB, Kuzuyama T, Kim SU. Two copies of 4-(cytidine 5'-diphospho)-2-C-methyl-D: -erythritol kinase (CMK) gene in Ginkgo biloba: molecular cloning and functional characterization. Planta 228: 941-950 (2008).

Kim SM, Kuzuyama T, Chang YJ, Kwon HJ, Kim SU. Cloning and functional characterization of 2-C-methyl-d-erythritol 4-phosphate cytidyltransferase (GbMECT) gene from Ginkgo biloba. Phytochemistry 67: 1435-1441 (2006).

Kim SR, Yang JI, Moon S, Ryu CH, An K, Kim KM, Yim J, An G. Rice OGR1 encodes a pentatricopeptide repeat-DYW protein and is essential for RNA editing in mitochondria. Plant J. 59: 738-749 (2009).

Kim SY, He Y, Jacob Y, Noh YS, Michaels S, Amasino R. Establishment of the vernalization-responsive, winter-annual habit in Arabidopsis requires a putative histone H3 methyl transferase. Plant Cell 17: 3301-3310 (2005).

Kim SY, Ma J, Perret P, Li Z, Thomas TL. Arabidopsis ABI5 subfamily members have distinct DNA-binding and transcriptional activities. Plant Physiol. 130: 688-697 (2002).

Kim SY, Yu X, Michaels SD. Regulation of CONSTANS and FT expression in response to changing light quality. Plant Physiol. 148: 269-279 (2008).

Kim TH, Kim BH, Yahalom A, Chamovitz DA, von Arnim AG. Translational regulation via 5' mRNA leader sequences revealed by mutational analysis of the Arabidopsis translation initiation factor subunit eIF3h. Plant Cell 16: 3341-3356 (2004).

Kim TW, Chang SC, Lee JS, Takatsuto S, Yokota T, Kim SK. Novel biosynthetic pathway of castasterone from cholesterol in tomato. Plant Physiol. 135: 1231-1242 (2004).

Kim TW, Hwang JY, Kim YS, Joo SH, Chang SC, Lee JS, Takatsuto S, Kim SK. Arabidopsis CYP85A2, a cytochrome P450, mediates the Baeyer-Villiger oxidation of castasterone to brassinolide in brassinosteroid biosynthesis. Plant Cell 17: 2397-2412 (2005).

Kim Y, Kim EJ, Rea PA. Isolation and characterization of cDNAs encoding the vacuolar H(+)-pyrophosphatase of Beta vulgaris. Plant Physiol. 106: 375-382 (1994).

Kim YJ, Kim JE, Lee JH, Lee MH, Jung HW, Bahk YY, Hwang BK, Hwang I, Kim WT. The Vr-PLC3 gene encodes a putative plasma membrane-localized phosphoinositide-specific phospholipase C whose expression is induced by abiotic stress in mung bean (Vigna radiata L.). FEBS Lett. 556: 127-136 (2004).

Kim YO, Kim JS, Kang H. Cold-inducible zinc finger-containing glycine-rich RNA-binding protein contributes to the enhancement of freezing tolerance in Arabidopsis thaliana. Plant J. 42: 890-900 (2005).

Kim YS, Kim SG, Park JE, Park HY, Lim MH, Chua NH, Park CM. A membrane-bound NAC transcription factor regulates cell division in Arabidopsis. Plant Cell 18: 3132-3144 (2006).

Kim YS, Nosaka K, Downs DM, Kwak JM, Park D, Chung IK, Nam HG. A Brassica cDNA clone encoding a bifunctional hydroxymethylpyrimidine kinase/thiamin-phosphate pyrophosphorylase involved in thiamin biosynthesis. Plant Mol. Biol. 37: 955-966 (1998).

Kim YW, Park DS, Park SC, Kim SH, Cheong GW, Hwang I. Arabidopsis dynamin-like 2 that binds specifically to phosphatidylinositol 4-phosphate assembles into a high-molecular weight complex in vivo and in vitro. Plant Physiol. 127: 1243-1255 (2001).

Kim YY, Choi H, Segami S, Cho HT, Martinoia E, Maeshima M, Lee Y. AtHMA1 contributes to the detoxification of excess ZnII in Arabidopsis. Plant J. 58: 737-753 (2009).

Kimbrough JM, Salinas-Mondragon R, Boss WF, Brown CS, Sederoff HW. The fast and transient transcriptional network of gravity and mechanical stimulation in the Arabidopsis root apex. Plant Physiol. 136: 2790-2805 (2004).

King JJ, Stimart DP, Fisher RH, Bleecker AB. A mutation altering auxin homeostasis and plant morphology in Arabidopsis. Plant Cell 7: 2023-2037 (1995).

King RW, Hisamatsu T, Goldschmidt EE, Blundell C. The nature of floral signals in Arabidopsis. I. Photosynthesis and a far-red photoresponse independently regulate flowering by increasing expression of FLOWERING LOCUS T (FT). J. Exp. Bot. 59: 3811-3820 (2008).

Kinoshita A, Nakamura Y, Sasaki E, Kyozuka J, Fukuda H, Sawa S. Gain-of-function phenotypes of chemically synthetic CLAVATA3/ESR-related (CLE) peptides in Arabidopsis thaliana and Oryza sativa. Plant Cell Physiol. 48: 1821-1825 (2007).

Kinoshita T, Hara-Nishimura I, Siraishi H, Okada K, Shimura Y, Nishimura M. Nucleotide sequence of a transmembrane protein (TMP-C) cDNA in Arabidopsis thaliana. Plant Physiol. 105: 1441-1442 (1994).

Kinoshita T, Yadegari R, Harada JJ, Goldberg RB, Fischer RL. Imprinting of the MEDEA polycomb gene in the Arabidopsis endosperm. Plant Cell 11: 1945-1952 (1999).

Kinoshita T, Yamada K, Hiraiwa N, Kondo M, Nishimura M, Hara-Nishimura I. Vacuolar processing enzyme is up-regulated in the lytic vacuoles of vegetative tissues during senescence and under various stressed conditions. Plant J. 19: 43-53 (1999).

Kirch HH, Bartels D, Wei Y, Schnable PS, Wood AJ. The ALDH gene superfamily of Arabidopsis. Trends Plant Sci. 9: 371-377 (2004).

Kirch HH, Nair A, Bartels D. Novel ABA- and dehydration-inducible aldehyde dehydrogenase genes isolated from the resurrection plant Craterostigma plantagineum and Arabidopsis thaliana. Plant J. 28: 555-567 (2001).

Kirch HH, Schlingensiepen S, Kotchoni S, Sunkar R, Bartels D. Detailed expression analysis of selected genes of the aldehyde dehydrogenase (ALDH) gene superfamily in Arabidopsis thaliana. Plant Mol. Biol. 57: 315-332 (2005).

Kirch HH, van Berkel J, Glaczinski H, Salamini F, Gebhardt C. Structural organization, expression and promoter activity of a cold-stress-inducible gene of potato. Plant Mol. Biol. 33: 897-909 (1997).

Kirch T, Simon R, Grunewald M, Werr W. The DORNROSCHEN/ENHANCER OF SHOOT REGENERATION1 gene of Arabidopsis acts in the control of meristem cell fate and lateral organ development. Plant Cell 15: 694-705 (2003).

Kirchberger S, Tjaden J, Ekkehard Neuhaus H. Characterization of the Arabidopsis Brittle1 transport protein and impact of reduced activity on plant metabolism. Plant J. 56: 51-63 (2008).

Kirik A, Pecinka A, Wendeler E, Reiss B. The chromatin assembly factor subunit FASCIATA1 is involved in homologous recombination in plants. Plant Cell 18: 2431-2442 (2006).

Kirik V, Grini PE, Mathur J, Klinkhammer I, Adler K, Bechtold N, Herzog M, Bonneville JM, Hulskamp M. The Arabidopsis TUBULIN-FOLDING COFACTOR A gene is involved in the control of the alpha/beta-tubulin monomer balance. Plant Cell 14: 2265-2276 (2002).

Kirik V, Kolle K, Misera S, Baumlein H. Two novel MYB homologues with changed expression in late embryogenesis-defective Arabidopsis mutants. Plant Mol. Biol. 37: 819-827 (1998).

Kishimoto K, Matsui K, Ozawa R, Takabayashi J. Direct fungicidal activities of C6-aldehydes are important constituents for defense responses in Arabidopsis against Botrytis cinerea. Phytochemistry 69: 2127-2132 (2008).

Kishimoto K, Matsui K, Ozawa R, Takabayashi J. Analysis of defensive responses activated by volatile allo-ocimene treatment in Arabidopsis thaliana. Phytochemistry 67: 1520-1529 (2006).

Kishimoto N, Sakai H, Jackson J, Jacobsen SE, Meyerowitz EM, Dennis ES, Finnegan EJ. Site specificity of the Arabidopsis METI DNA methyltransferase demonstrated through hypermethylation of the superman locus. Plant Mol. Biol. 46: 171-183 (2001).

Kiss JZ, Edelmann RE, Wood PC. Gravitropism of hypocotyls of wild-type and starch-deficient Arabidopsis seedlings in spaceflight studies. Planta 209: 96-103 (1999).

Kiss JZ, Miller KM, Ogden LA, Roth KK. Phototropism and gravitropism in lateral roots of Arabidopsis. Plant Cell Physiol. 43: 35-43 (2002).

Kiss JZ, Mullen JL, Correll MJ, Hangarter RP. Phytochromes A and B mediate red-light-induced positive phototropism in roots. Plant Physiol. 131: 1411-1417 (2003).

Kitahata N, Han SY, Noji N, Saito T, Kobayashi M, Nakano T, Kuchitsu K, Shinozaki K, Yoshida S, Matsumoto S, Tsujimoto M, Asami T. A 9-cis-epoxycarotenoid dioxygenase inhibitor for use in the elucidation of abscisic acid action mechanisms. Bioorg. Med. Chem. 14: 5555-5561 (2006).

Kitahata N, Saito S, Miyazawa Y, Umezawa T, Shimada Y, Min YK, Mizutani M, Hirai N, Shinozaki K, Yoshida S, Asami T. Chemical regulation of abscisic acid catabolism in plants by cytochrome P450 inhibitors. Bioorg. Med. Chem. 13: 4491-4498 (2005).

Kitamura S, Shikazono N, Tanaka A. TRANSPARENT TESTA 19 is involved in the accumulation of both anthocyanins and proanthocyanidins in Arabidopsis. Plant J. 37: 104-114 (2004).

Kitashiba H, Ishizaka T, Isuzugawa K, Nishimura K, Suzuki T. Expression of a sweet cherry DREB1/CBF ortholog in Arabidopsis confers salt and freezing tolerance. J. Plant Physiol. 161: 1171-1176 (2004).

Kitsios G, Alexiou KG, Bush M, Shaw P, Doonan JH. A cyclin-dependent protein kinase, CDKC2, colocalizes with and modulates the distribution of spliceosomal components in Arabidopsis. Plant J. 54: 220-235 (2008).

Kiyosue T, Abe H, Yamaguchi-Shinozaki K, Shinozaki K. ERD6, a cDNA clone for an early dehydration-induced gene of Arabidopsis, encodes a putative sugar transporter. Biochim. Biophys. Acta 1370: 187-191 (1998).

Kiyosue T, Yamaguchi-Shinozaki K, Shinozaki K. Characterization of two cDNAs (ERD11 and ERD13) for dehydration-inducible genes that encode putative glutathione S-transferases in Arabidopsis thaliana L. FEBS Lett. 335: 189-192 (1993).

Kiyosue T, Yamaguchi-Shinozaki K, Shinozaki K. ERD15, a cDNA for a dehydration-induced gene from Arabidopsis thaliana. Plant Physiol. 106: 1707 (1994).

Kiyosue T, Yamaguchi-Shinozaki K, Shinozaki K. Cloning of cDNAs for genes that are early-responsive to dehydration stress (ERDs) in Arabidopsis thaliana L.: identification of three ERDs as HSP cognate genes. Plant Mol. Biol. 25: 791-798 (1994).

Kiyosue T, Yoshiba Y, Yamaguchi-Shinozaki K, Shinozaki K. A nuclear gene encoding mitochondrial proline dehydrogenase, an enzyme involved in proline metabolism, is upregulated by proline but downregulated by dehydration in Arabidopsis. Plant Cell 8: 1323-1335 (1996).

Kjell J, Rasmusson AG, Larsson H, Widell S. Protein complexes of the plant plasma membrane resolved by Blue Native PAGE. Physiol. Plant. 121: 546-555 (2004).

Klahn S, Marquardt DM, Rollwitz I, Hagemann M. Expression of the ggpPS gene for glucosylglycerol biosynthesis from Azotobacter vinelandii improves the salt tolerance of Arabidopsis thaliana. J. Exp. Bot. 60: 1679-1689 (2009).

Klahre U, Chua NH. The Arabidopsis actin-related protein 2 (AtARP2) promoter directs expression in xylem precursor cells and pollen. Plant Mol. Biol. 41: 65-73 (1999).

Klahre U, Friederich E, Kost B, Louvard D, Chua NH. Villin-like actin-binding proteins are expressed ubiquitously in Arabidopsis. Plant Physiol. 122: 35-48 (2000).

Klahre U, Noguchi T, Fujioka S, Takatsuto S, Yokota T, Nomura T, Yoshida S, Chua NH. The Arabidopsis DIMINUTO/DWARF1 gene encodes a protein involved in steroid synthesis. Plant Cell 10: 1677-1690 (1998).

Klatte M, Schuler M, Wirtz M, Fink-Straube C, Hell R, Bauer P. The analysis of Arabidopsis nicotianamine synthase mutants reveals functions for nicotianamine in seed iron loading and iron deficiency responses. Plant Physiol. 150: 257-271 (2009).

Klaus D, Hartel H, Fitzpatrick LM, Froehlich JE, Hubert J, Benning C, Dormann P. Digalactosyldiacylglycerol synthesis in chloroplasts of the Arabidopsis dgd1 mutant. Plant Physiol. 128: 885-895 (2002).

Klaus D, Ohlrogge JB, Neuhaus HE, Dormann P. Increased fatty acid production in potato by engineering of acetyl-CoA carboxylase. Planta 219: 389-396 (2004).

Klaus SM, Kunji ER, Bozzo GG, Noiriel A, de la Garza RD, Basset GJ, Ravanel S, Rebeille F, Gregory JF 3rd, Hanson AD. Higher plant plastids and cyanobacteria have folate carriers related to those of trypanosomatids. J. Biol. Chem. 280: 38457-38463 (2005).

Klaus SM, Wegkamp A, Sybesma W, Hugenholtz J, Gregory JF 3rd, Hanson AD. A nudix enzyme removes pyrophosphate from dihydroneopterin triphosphate in the folate synthesis pathway of bacteria and plants. J. Biol. Chem. 280: 5274-5280 (2005).

Klee HJ. Ethylene signal transduction. Moving beyond Arabidopsis. Plant Physiol. 135: 660-667 (2004).

Klee HJ, Muskopf YM, Gasser CS. Cloning of an Arabidopsis thaliana gene encoding 5-enolpyruvylshikimate-3-phosphate synthase: sequence analysis and manipulation to obtain glyphosate-tolerant plants. Mol. Gen. Genet. 210: 437-442 (1987).

Klein EM, Mascheroni L, Pompa A, Ragni L, Weimar T, Lilley KS, Dupree P, Vitale A. Plant endoplasmin supports the protein secretory pathway and has a role in proliferating tissues. Plant J. 48: 657-673 (2006).

Klein M, Burla B, Martinoia E. The multidrug resistance-associated protein (MRP/ABCC) subfamily of ATP-binding cassette transporters in plants. FEBS Lett. 580: 1112-1122 (2006).

Klein M, Papenbrock J. Kinetics and substrate specificities of desulfo-glucosinolate sulfotransferases in Arabidopsis thaliana. Physiol. Plant. 135: 140-149 (2009).

Klein M, Papenbrock J. The multi-protein family of Arabidopsis sulphotransferases and their relatives in other plant species. J. Exp. Bot. 55: 1809-1820 (2004).

Klein M, Perfus-Barbeoch L, Frelet A, Gaedeke N, Reinhardt D, Mueller-Roeber B, Martinoia E, Forestier C. The plant multidrug resistance ABC transporter AtMRP5 is involved in guard cell hormonal signalling and water use. Plant J. 33: 119-129 (2003).

Klein MA, Sekimoto H, Milner MJ, Kochian LV. Investigation of heavy metal hyperaccumulation at the cellular level: development and characterization of Thlaspi caerulescens suspension cell lines. Plant Physiol. 147: 2006-2016 (2008).

Kleine T, Kindgren P, Benedict C, Hendrickson L, Strand A. Genome-wide gene expression analysis reveals a critical role for CRYPTOCHROME1 in the response of Arabidopsis to high irradiance. Plant Physiol. 144: 1391-1406 (2007).

Kleine T, Lockhart P, Batschauer A. An Arabidopsis protein closely related to Synechocystis cryptochrome is targeted to organelles. Plant J. 35: 93-103 (2003).

Kleine-Vehn J, Dhonukshe P, Swarup R, Bennett M, Friml J. Subcellular trafficking of the Arabidopsis auxin influx carrier AUX1 uses a novel pathway distinct from PIN1. Plant Cell 18: 3171-3181 (2006).

Kleiner O, Butenandt J, Carell T, Batschauer A. Class II DNA photolyase from Arabidopsis thaliana contains FAD as a cofactor. Eur. J. Biochem. 264: 161-167 (1999).

Klepek YS, Geiger D, Stadler R, Klebl F, Landouar-Arsivaud L, Lemoine R, Hedrich R, Sauer N. Arabidopsis POLYOL TRANSPORTER5, a new member of the monosaccharide transporter-like superfamily, mediates H+-symport of numerous substrates, including myo-inositol, glycerol, and ribose. Plant Cell 17: 204-218 (2005).

Kliebenstein D, Pedersen D, Barker B, Mitchell-Olds T. Comparative analysis of quantitative trait loci controlling glucosinolates, myrosinase and insect resistance in Arabidopsis thaliana. Genetics 161: 325-332 (2002).

Kliebenstein DJ. Secondary metabolites and plant/environment interactions: a view through Arabidopsis thaliana tinged glasses. Plant Cell Environ. 27: 675-684 (2004).

Kliebenstein DJ, D'Auria JC, Behere AS, Kim JH, Gunderson KL, Breen JN, Lee G, Gershenzon J, Last RL, Jander G. Characterization of seed-specific benzoyloxyglucosinolate mutations in Arabidopsis thaliana. Plant J. 51: 1062-1076 (2007).

Kliebenstein DJ, Figuth A, Mitchell-Olds T. Genetic architecture of plastic methyl jasmonate responses in Arabidopsis thaliana. Genetics 161: 1685-1696 (2002).

Kliebenstein DJ, Kroymann J, Brown P, Figuth A, Pedersen D, Gershenzon J, Mitchell-Olds T. Genetic control of natural variation in Arabidopsis glucosinolate accumulation. Plant Physiol. 126: 811-825 (2001).

Kliebenstein DJ, Kroymann J, Mitchell-Olds T. The glucosinolate-myrosinase system in an ecological and evolutionary context. Curr. Opin. Plant Biol. 8: 264-271 (2005).

Kliebenstein DJ, Lambrix VM, Reichelt M, Gershenzon J, Mitchell-Olds T. Gene duplication in the diversification of secondary metabolism. Tandem 2-oxoglutarate-dependent dioxygenases control glucosinolate biosynthesis in Arabidopsis. Plant Cell 13: 681-693 (2001).

Kliebenstein DJ, Lim JE, Landry LG, Last RL. Arabidopsis UVR8 regulates ultraviolet-B signal transduction and tolerance and contains sequence similarity to human regulator of chromatin condensation 1. Plant Physiol. 130: 234-243 (2002).

Kliebenstein DJ, Monde RA, Last RL. Superoxide dismutase in Arabidopsis: an eclectic enzyme family with disparate regulation and protein localization. Plant Physiol. 118: 637-650 (1998).

Kliebenstein DJ, Rowe HC, Denby KJ. Secondary metabolites influence Arabidopsis/Botrytis interactions: variation in host production and pathogen sensitivity. Plant J. 44: 25-36 (2005).

Klimczak LJ, Farini D, Lin C, Ponti D, Cashmore AR, Giuliano G. Multiple isoforms of Arabidopsis casein kinase I combine conserved catalytic domains with variable carboxyl-terminal extensions. Plant Physiol. 109: 687-696 (1995).

Klimmek F, Sjodin A, Noutsos C, Leister D, Jansson S. Abundantly and rarely expressed Lhc protein genes exhibit distinct regulation patterns in plants. Plant Physiol. 140: 793-804 (2006).

Klimyuk VI, Persello-Cartieaux F, Havaux M, Contard-David P, Schuenemann D, Meiherhoff K, Gouet P, Jones JD, Hoffman NE, Nussaume L. A chromodomain protein encoded by the Arabidopsis CAO gene is a plant-specific component of the chloroplast signal recognition particle pathway that is involved in LHCP targeting. Plant Cell 11: 87-100 (1999).

Klinghammer M, Tenhaken R. Genome-wide analysis of the UDP-glucose dehydrogenase gene family in Arabidopsis, a key enzyme for matrix polysaccharides in cell walls. J. Exp. Bot. 58: 3609-3621 (2007).

Klok EJ, Wilson IW, Wilson D, Chapman SC, Ewing RM, Somerville SC, Peacock WJ, Dolferus R, Dennis ES. Expression profile analysis of the low-oxygen response in Arabidopsis root cultures. Plant Cell 14: 2481-2494 (2002).

Klotke J, Kopka J, Gatzke N, Heyer AG. Impact of soluble sugar concentrations on the acquisition of freezing tolerance in accessions of Arabidopsis thaliana with contrasting cold adaptation - evidence for a role of raffinose in cold acclimation. Plant Cell Environ. 27: 1395-1404 (2004).

Klusener B, Young JJ, Murata Y, Allen GJ, Mori IC, Hugouvieux V, Schroeder JI. Convergence of calcium signaling pathways of pathogenic elicitors and abscisic acid in Arabidopsis guard cells. Plant Physiol. 130: 2152-2163 (2002).

Kmiec-Wisniewska B, Krumpe K, Urantowka A, Sakamoto W, Pratje E, Janska H. Plant mitochondrial rhomboid, AtRBL12, has different substrate specificity from its yeast counterpart. Plant Mol. Biol. 68: 159-171 (2008).

Knappe S, Flugge UI, Fischer K. Analysis of the plastidic phosphate translocator gene family in Arabidopsis and identification of new phosphate translocator-homologous transporters, classified by their putative substrate-binding site. Plant Physiol. 131: 1178-1190 (2003).

Knappe S, Lottgert T, Schneider A, Voll L, Flugge UI, Fischer K. Characterization of two functional phosphoenolpyruvate/phosphate translocator (PPT) genes in Arabidopsis--AtPPT1 may be involved in the provision of signals for correct mesophyll development. Plant J. 36: 411-420 (2003).

Knieb E, Salomon M, Rudiger W. Tissue-specific and subcellular localization of phototropin determined by immuno-blotting. Planta 218: 843-851 (2004).

Knight H, Brandt S, Knight MR. A history of stress alters drought calcium signalling pathways in Arabidopsis. Plant J. 16: 681-687 (1998).

Knight H, Mugford Nee Garton SG, Ulker B, Gao D, Thorlby G, Knight MR. Identification of SFR6, a key component in cold acclimation acting post-translationally on CBF function. Plant J. Dec 3 [Epub ahead of print] (2008).

Knight H, Thomson AJ, McWatters HG. SENSITIVE TO FREEZING 6 (SFR6) integrates cellular and environmental inputs to the plant circadian clock. Plant Physiol. 148: 293-303 (2008).

Knight H, Trewavas AJ, Knight MR. Calcium signalling in Arabidopsis thaliana responding to drought and salinity. Plant J. 12: 1067-1078 (1997).

Knight H, Zarka DG, Okamoto H, Thomashow MF, Knight MR. Abscisic acid induces CBF gene transcription and subsequent induction of cold-regulated genes via the CRT promoter element. Plant Physiol. 135: 1710-1717 (2004).

Knizewski L, Ginalski K, Jerzmanowski A. Snf2 proteins in plants: gene silencing and beyond. Trends Plant Sci. 13: 557-565 (2008).

Knoth C, Eulgem T. The oomycete response gene LURP1 is required for defense against Hyaloperonospora parasitica in Arabidopsis thaliana. Plant J. 55: 53-64 (2008).

Knoth C, Salus MS, Girke T, Eulgem T. The synthetic elicitor 3,5-dichloroanthranilic acid induces NPR1-dependent and NPR1-independent mechanisms of disease resistance in Arabidopsis. Plant Physiol. 150: 333-347 (2009).

Knott JM, Romer P, Sumper M. Putative spermine synthases from Thalassiosira pseudonana and Arabidopsis thaliana synthesize thermospermine rather than spermine. FEBS Lett. 581: 3081-3086 (2007).

Ko CB, Woo YM, Lee DJ, Lee MC, Kim CS. Enhanced tolerance to heat stress in transgenic plants expressing the GASA4 gene. Plant Physiol. Biochem. 45: 722-728 (2007).

Ko CH, Brendel V, Taylor RD, Walbot V. U-richness is a defining feature of plant introns and may function as an intron recognition signal in maize. Plant Mol. Biol. 36: 573-583 (1998).

Ko JH, Beers EP, Han KH. Global comparative transcriptome analysis identifies gene network regulating secondary xylem development in Arabidopsis thaliana. Mol. Genet. Genomics 276: 517-531 (2006).

Ko JH, Han KH. Arabidopsis whole-transcriptome profiling defines the features of coordinated regulations that occur during secondary growth. Plant Mol. Biol. 55: 433-453 (2004).

Ko JH, Han KH, Park S, Yang J. Plant body weight-induced secondary growth in Arabidopsis and its transcription phenotype revealed by whole-transcriptome profiling. Plant Physiol. 135: 1069-1083 (2004).

Ko JH, Kim JH, Jayanty SS, Howe GA, Han KH. Loss of function of COBRA, a determinant of oriented cell expansion, invokes cellular defence responses in Arabidopsis thaliana. J. Exp. Bot. 57: 2923-2936 (2006).

Ko JH, Yang SH, Han KH. Upregulation of an Arabidopsis RING-H2 gene, XERICO, confers drought tolerance through increased abscisic acid biosynthesis. Plant J. 47: 343-355 (2006).

Ko JH, Yang SH, Park AH, Lerouxel O, Han KH. ANAC012, a member of the plant-specific NAC transcription factor family, negatively regulates xylary fiber development in Arabidopsis thaliana. Plant J. 50: 1035-1048 (2007).

Kobayashi K, Awai K, Nakamura M, Nagatani A, Masuda T, Ohta H. Type B monogalactosyldiacylglycerol synthases are involved in phosphate starvation-induced lipid remodeling and are crucial for low-phosphate adaptation. Plant J. 57: 322-331 (2009).

Kobayashi K, Awai K, Takamiya K, Ohta H. Arabidopsis type B monogalactosyldiacylglycerol synthase genes are expressed during pollen tube growth and induced by phosphate starvation. Plant Physiol. 134: 640-648 (2004).

Kobayashi K, Kondo M, Fukuda H, Nishimura M, Ohta H. Galactolipid synthesis in chloroplast inner envelope is essential for proper thylakoid biogenesis, photosynthesis, and embryogenesis. Proc. Natl. Acad. Sci. U.S.A. 104: 17216-17221 (2007).

Kobayashi K, Zambryski P. RNA silencing and its cell-to-cell spread during Arabidopsis embryogenesis. Plant J. 50: 597-604 (2007).

Kobayashi M, Gaskin P, Spray CR, Suzuki Y, Phinney BO, MacMillan J. Metabolism and biological activity of gibberellin A4 in vegetative shoots of Zea mays, Oryza sativa, and Arabidopsis thaliana. Plant Physiol. 102: 379-386 (1993).

Kobayashi N, Dellapenna D. Tocopherol metabolism, oxidation and recycling under high light stress in Arabidopsis. Plant J. 55: 607-618 (2008).

Kobayashi Y, Furuta Y, Ohno T, Hara T, Koyama H. Quantitative trait loci controlling aluminium tolerance in two accessions of Arabidopsis thaliana (Landsberg erecta and Cape Verde Islands). Plant Cell Environ. 28: 1516-1524 (2005).

Kobayashi Y, Kuroda K, Kimura K, Southron-Francis JL, Furuzawa A, Kimura K, Iuchi S, Kobayashi M, Taylor GJ, Koyama H. Amino acid polymorphisms in strictly conserved domains of a P-type ATPase HMA5 are involved in the mechanism of copper tolerance variation in Arabidopsis. Plant Physiol. 148: 969-980 (2008).

Kobbe D, Blanck S, Demand K, Focke M, Puchta H. AtRECQ2, a RecQ-helicase homologue from Arabidopsis thaliana, is able to disrupt different recombinogenic DNA-structures in vitro. Plant J. 55: 397-405 (2008).

Koch M, Lemke R, Heise KP, Mock HP. Characterization of gamma-tocopherol methyltransferases from Capsicum annuum L and Arabidopsis thaliana. Eur. J. Biochem. 270: 84-92 (2003).

Koch M, Vorwerk S, Masur C, Sharifi-Sirchi G, Olivieri N, Schlaich NL. A role for a flavin-containing mono-oxygenase in resistance against microbial pathogens in Arabidopsis. Plant J. 47: 629-639 (2006).

Kocsis MG, Ranocha P, Gage DA, Simon ES, Rhodes D, Peel GJ, Mellema S, Saito K, Awazuhara M, Li C, Meeley RB, Tarczynski MC, Wagner C, Hanson AD. Insertional inactivation of the methionine S-methyltransferase gene eliminates the S-methylmethionine cycle and increases the methylation ratio. Plant Physiol. 131: 1808-1815 (2003).

Kodama H, Hamada T, Horiguchi G, Nishimura M, Iba K. Genetic enhancement of cold tolerance by expression of a gene for chloroplast [omega]-3 fatty acid desaturase in transgenic tobacco. Plant Physiol. 105: 601-605 (1994).

Kodama Y, Nagaya S, Shinmyo A, Kato K. Mapping and characterization of DNase I hypersensitive sites in Arabidopsis chromatin. Plant Cell Physiol. 48: 459-470 (2007).

Koga A, Ishibashi T, Kimura S, Uchiyama Y, Sakaguchi K. Characterization of T-DNA insertion mutants and RNAi silenced plants of Arabidopsis thaliana UV-damaged DNA binding protein 2 (AtUV-DDB2). Plant Mol. Biol. 61: 227-240 (2006).

Koh EJ, Kwon YR, Kim KI, Hong SW, Lee H. Altered ARA2 (RABA1a) expression in Arabidopsis reveals the involvement of a Rab/YPT family member in auxin-mediated responses. Plant Mol. Biol. 70: 113-122 (2009).

Koh S, Andre A, Edwards H, Ehrhardt D, Somerville S. Arabidopsis thaliana subcellular responses to compatible Erysiphe cichoracearum infections. Plant J. 44: 516-529 (2005).

Koh S, Lee SC, Kim MK, Koh JH, Lee S, An G, Choe S, Kim SR. T-DNA tagged knockout mutation of rice OsGSK1, an orthologue of Arabidopsis BIN2, with enhanced tolerance to various abiotic stresses. Plant Mol. Biol. 65: 453-466 (2007).

Koh S, Wiles AM, Sharp JS, Naider FR, Becker JM, Stacey G. An oligopeptide transporter gene family in Arabidopsis. Plant Physiol. 128: 21-29 (2002).

Kohler A, Rinaldi C, Duplessis S, Baucher M, Geelen D, Duchaussoy F, Meyers BC, Boerjan W, Martin F. Genome-wide identification of NBS resistance genes in Populus trichocarpa. Plant Mol. Biol. 66: 619-636 (2008).

Kohler A, Schwindling S, Conrath U. Benzothiadiazole-induced priming for potentiated responses to pathogen infection, wounding, and infiltration of water into leaves requires the NPR1/NIM1 gene in Arabidopsis. Plant Physiol. 128: 1046-1056 (2002).

Kohler C, Merkle T, Neuhaus G. Characterisation of a novel gene family of putative cyclic nucleotide- and calmodulin-regulated ion channels in Arabidopsis thaliana. Plant J. 18: 97-104 (1999).

Kohler C, Merkle T, Roby D, Neuhaus G. Developmentally regulated expression of a cyclic nucleotide-gated ion channel from Arabidopsis indicates its involvement in programmed cell death. Planta 213: 327-332 (2001).

Kohler L, Spatz HC. Micromechanics of plant tissues beyond the linear-elastic range. Planta 215: 33-40 (2002).

Kohorn BD, Kobayashi M, Johansen S, Riese J, Huang LF, Koch K, Fu S, Dotson A, Byers N. An Arabidopsis cell wall-associated kinase required for invertase activity and cell growth. Plant J. 46: 307-316 (2006).

Koiwa H, Bressan RA, Hasegawa PM. Identification of plant stress-responsive determinants in Arabidopsis by large-scale forward genetic screens. J. Exp. Bot. 57: 1119-1128 (2006).

Koiwa H, Li F, McCully MG, Mendoza I, Koizumi N, Manabe Y, Nakagawa Y, Zhu J, Rus A, Pardo JM, Bressan RA, Hasegawa PM. The STT3a subunit isoform of the Arabidopsis oligosaccharyltransferase controls adaptive responses to salt/osmotic stress. Plant Cell 15: 2273-2284 (2003).

Koiwai H, Akaba S, Seo M, Komano T, Koshiba T. Functional expression of two Arabidopsis aldehyde oxidases in the yeast Pichia pastoris. J. Biochem. 127: 659-664 (2000).

Koiwai H, Nakaminami K, Seo M, Mitsuhashi W, Toyomasu T, Koshiba T. Tissue-specific localization of an abscisic acid biosynthetic enzyme, AAO3, in Arabidopsis. Plant Physiol. 134: 1697-1707 (2004).

Koizumi N, Martinez IM, Kimata Y, Kohno K, Sano H, Chrispeels MJ. Molecular characterization of two Arabidopsis Ire1 homologs, endoplasmic reticulum-located transmembrane protein kinases. Plant Physiol. 127: 949-962 (2001).

Koizumi N, Ujino T, Sano H, Chrispeels MJ. Overexpression of a gene that encodes the first enzyme in the biosynthesis of asparagine-linked glycans makes plants resistant to tunicamycin and obviates the tunicamycin-induced unfolded protein response. Plant Physiol. 121: 353-362 (1999).

Kojima H, Suzuki T, Kato T, Enomoto K, Sato S, Kato T, Tabata S, Sáez-Vasquez J, Echeverría M, Nakagawa T, Ishiguro S, Nakamura K. Sugar-inducible expression of the nucleolin-1 gene of Arabidopsis thaliana and its role in ribosome synthesis, growth and development. Plant J. 49: 1053-1063 (2007).

Kojima S, Bohner A, Gassert B, Yuan L, von Wirén N. AtDUR3 represents the major transporter for high-affinity urea transport across the plasma membrane of nitrogen-deficient Arabidopsis roots. Plant J. 52: 30-40 (2007).

Koka CV, Cerny RE, Gardner RG, Noguchi T, Fujioka S, Takatsuto S, Yoshida S, Clouse SD. A putative role for the tomato genes DUMPY and CURL-3 in brassinosteroid biosynthesis and response. Plant Physiol. 122: 85-98 (2000).

Kolbe A, Oliver SN, Fernie AR, Stitt M, van Dongen JT, Geigenberger P. Combined transcript and metabolite profiling of Arabidopsis leaves reveals fundamental effects of the thiol-disulfide status on plant metabolism. Plant Physiol. 141: 412-422 (2006).

Kolbert Z, Bartha B, Erdei L. Exogenous auxin-induced NO synthesis is nitrate reductase-associated in Arabidopsis thaliana root primordia. J. Plant Physiol. 165: 967-975 (2008).

Koltai H, Bird DM. High throughput cellular localization of specific plant mRNAs by liquid-phase in situ reverse transcription-polymerase chain reaction of tissue sections. Plant Physiol. 123: 1203-1212 (2000).

Kolukisaoglu HU, Bovet L, Klein M, Eggmann T, Geisler M, Wanke D, Martinoia E, Schulz B. Family business: the multidrug-resistance related protein (MRP) ABC transporter genes in Arabidopsis thaliana. Planta 216: 107-119 (2002).

Kolukisaoglu U, Weinl S, Blazevic D, Batistic O, Kudla J. Calcium sensors and their interacting protein kinases: genomics of the Arabidopsis and rice CBL-CIPK signaling networks. Plant Physiol. 134: 43-58 (2004).

Komarova NY, Thor K, Gubler A, Meier S, Dietrich D, Weichert A, Grotemeyer MS, Tegeder M, Rentsch D. AtPTR1 and AtPTR5 transport dipeptides in planta Plant Physiol. 148: 856-869 (2008).

Komatsu A, Moriguchi T, Koyama K, Omura M, Akihama T. Analysis of sucrose synthase genes in citrus suggests different roles and phylogenetic relationships. J. Exp. Bot. 53: 61-71 (2002).

Komatsu K, Nishikawa Y, Ohtsuka T, Taji T, Quatrano RS, Tanaka S, Sakata Y. Functional analyses of the ABI1-related protein phosphatase type 2C reveal evolutionarily conserved regulation of abscisic acid signaling between Arabidopsis and the moss Physcomitrella patens. Plant Mol. Biol. 70: 327-340 (2009).

Komatsu S, Konishi H, Hashimoto M. The proteomics of plant cell membranes. J. Exp. Bot. 58: 103-112 (2007).

Komatsu S, Yang G, Hayashi N, Kaku H, Umemura K, Iwasaki Y. Alterations by a defect in a rice G protein alpha subunit in probenazole and pathogen-induced responses. Plant Cell Environ. 27: 947-957 (2004).

Komeda Y. Genetic regulation of time to flower in Arabidopsis thaliana. Annu. Rev. Plant Biol. 55: 521-535 (2004).

Konagaya KI, Ando S, Kamachi S, Tsuda M, Tabei Y. Efficient production of genetically engineered, male-sterile Arabidopsis thaliana using anther-specific promoters and genes derived from Brassica oleracea and B. rapa. Plant Cell Rep. 27: 1741-1754 (2008).

Kondou Y, Higuchi M, Takahashi S, Sakurai T, Ichikawa T, Kuroda H, Yoshizumi T, Tsumoto Y, Horii Y, Kawashima M, Hasegawa Y, Kuriyama T, Matsui K, Kusano M, Albinsky D, Takahashi H, Nakamura Y, Suzuki M, Sakakibara H, Kojima M, Akiyama K, et al. Systematic approaches to using the FOX hunting system to identify useful rice genes. Plant J. 57: 883-894 (2009).

Kong H, Landherr LL, Frohlich MW, Leebens-Mack J, Ma H, dePamphilis CW. Patterns of gene duplication in the plant SKP1 gene family in angiosperms: evidence for multiple mechanisms of rapid gene birth. Plant J. 50: 873-885 (2007).

Kong SG, Kinoshita T, Shimazaki K, Mochizuki N, Suzuki T, Nagatani A. The C-terminal kinase fragment of Arabidopsis phototropin 2 triggers constitutive phototropin responses. Plant J. 51: 862-873 (2007).

Kong SG, Suzuki T, Tamura K, Mochizuki N, Hara-Nishimura I, Nagatani A. Blue light-induced association of phototropin 2 with the Golgi apparatus. Plant J. 45: 994-1005 (2006).

Koniger M, Delamaide JA, Marlow ED, Harris GC. Arabidopsis thaliana leaves with altered chloroplast numbers and chloroplast movement exhibit impaired adjustments to both low and high light. J. Exp. Bot. 59: 2285-2297 (2008).

Konishi M, Sugiyama M. A novel plant-specific family gene, ROOT PRIMORDIUM DEFECTIVE 1, is required for the maintenance of active cell proliferation. Plant Physiol. 140: 591-602 (2006).

Konishi M, Yanagisawa S. Ethylene signaling in Arabidopsis involves feedback regulation via the elaborate control of EBF2 expression by EIN3. Plant J. 55: 821-831 (2008).

Kono A, Umeda-Hara C, Adachi S, Nagata N, Konomi M, Nakagawa T, Uchimiya H, Umeda M. The Arabidopsis D-type cyclin CYCD4 controls cell division in the stomatal lineage of the hypocotyl epidermis. Plant Cell 19: 1265-1277 (2007).

Kono A, Umeda-Hara C, Lee J, Ito M, Uchimiya H, Umeda M. Arabidopsis D-type cyclin CYCD4;1 is a novel cyclin partner of B2-type cyclin-dependent kinase. Plant Physiol. 132: 1315-1321 (2003).

Konopka CA, Backues SK, Bednarek SY. Dynamics of Arabidopsis dynamin-related protein 1C and a clathrin light chain at the plasma membrane. Plant Cell 20: 1363-1380 (2008).

Koo AJ, Fulda M, Browse J, Ohlrogge JB. Identification of a plastid acyl-acyl carrier protein synthetase in Arabidopsis and its role in the activation and elongation of exogenous fatty acids. Plant J. 44: 620-632 (2005).

Koo AJ, Ohlrogge JB. The predicted candidates of Arabidopsis plastid inner envelope membrane proteins and their expression profiles. Plant Physiol. 130: 823-836 (2002).

Koo JC, Asurmendi S, Bick J, Woodford-Thomas T, Beachy RN. Ecdysone agonist-inducible expression of a coat protein gene from tobacco mosaic virus confers viral resistance in transgenic Arabidopsis. Plant J. 37: 439-448 (2004).

Koo YJ, Kim MA, Kim EH, Song JT, Jung C, Moon JK, Kim JH, Seo HS, Song SI, Kim JK, Lee JS, Cheong JJ, Choi YD. Overexpression of salicylic acid carboxyl methyltransferase reduces salicylic acid-mediated pathogen resistance in Arabidopsis thaliana. Plant Mol. Biol. 64: 1-15 (2007).

Kooiker M, Airoldi CA, Losa A, Manzotti PS, Finzi L, Kater MM, Colombo L. BASIC PENTACYSTEINE1, a GA binding protein that induces conformational changes in the regulatory region of the homeotic Arabidopsis gene SEEDSTICK. Plant Cell 17: 722-729 (2005).

Koornneef A, Leon-Reyes A, Ritsema T, Verhage A, Otter FC, Van Loon LC, Pieterse CM. Kinetics of salicylate-mediated suppression of jasmonate signaling reveal a role for redox modulation. Plant Physiol. 147: 1358-1368 (2008).

Koornneef M. Isolation of higher plant developmental mutants. Symp. Soc. Exp. Biol. 45: 1-19 (1991).

Koornneef M, Alonso-Blanco C, Vreugdenhil D. Naturally occurring genetic variation in Arabidopsis thaliana. Annu. Rev. Plant Biol. 55: 141-172 (2004).

Koornneef M, Bentsink L, Hilhorst H. Seed dormancy and germination. Curr. Opin. Plant Biol. 5: 33-36 (2002).

Kopka J, Ludewig M, Muller-Rober B. Complementary DNAs encoding eukaryotic-type cytidine-5'-diphosphate-diacylglycerol synthases of two plant species. Plant Physiol. 113: 997-1002 (1997).

Kopriva S. Regulation of sulfate assimilation in Arabidopsis and beyond. Ann. Bot. (Lond.) 97: 479-495 (2006).

Kopriva S, Buchert T, Fritz G, Suter M, Weber M, Benda R, Schaller J, Feller U, Schurmann P, Schunemann V, Trautwein AX, Kroneck PM, Brunold C. Plant adenosine 5'-phosphosulfate reductase is a novel iron-sulfur protein. J. Biol. Chem. 276: 42881-42886 (2001).

Kopriva S, Muheim R, Koprivova A, Trachsel N, Catalano C, Suter M, Brunold C. Light regulation of assimilatory sulphate reduction in Arabidopsis thaliana. Plant J. 20: 37-44 (1999).

Koprivova A, Suter M, den Camp RO, Brunold C, Kopriva S. Regulation of sulfate assimilation by nitrogen in Arabidopsis. Plant Physiol. 122: 737-746 (2000).

Kordic S, Cummins I, Edwards R. Cloning and characterization of an S-formylglutathione hydrolase from Arabidopsis thaliana. Arch. Biochem. Biophys. 399: 232-238 (2002).

Koren'kov V, Park S, Cheng NH, Sreevidya C, Lachmansingh J, Morris J, Hirschi K, Wagner GJ. Enhanced Cd(2+)-selective root-tonoplast-transport in tobaccos expressing Arabidopsis cation exchangers. Planta 225: 403-411 (2007).

Kornet N, Scheres B. Members of the GCN5 histone acetyltransferase complex regulate PLETHORA-mediated root stem cell niche maintenance and transit amplifying cell proliferation in Arabidopsis. Plant Cell 21: 1070-1079 (2009).

Korolev AV, Chan J, Naldrett MJ, Doonan JH, Lloyd CW. Identification of a novel family of 70 kDa microtubule-associated proteins in Arabidopsis cells. Plant J. 42: 547-555 (2005).

Koroleva OA, Davies A, Deeken R, Thorpe MR, Tomos AD, Hedrich R. Identification of a new glucosinolate-rich cell type in Arabidopsis flower stalk. Plant Physiol. 124: 599-608 (2000).

Koroleva OA, Tomlinson ML, Leader D, Shaw P, Doonan JH. High-throughput protein localization in Arabidopsis using Agrobacterium-mediated transient expression of GFP-ORF fusions. Plant J. 41: 162-174 (2005).

Korshunova YO, Eide D, Clark WG, Guerinot ML, Pakrasi HB. The IRT1 protein from Arabidopsis thaliana is a metal transporter with a broad substrate range. Plant Mol. Biol. 40: 37-44 (1999).

Korves TM, Bergelson J. A developmental response to pathogen infection in Arabidopsis. Plant Physiol. 133: 339-347 (2003).

Kostenyuk IA, Burns JK. Mechanical wounding and abscission in citrus. Physiol. Plant. 122: 354-361 (2004).

Kosugi S, Ohashi Y. Interaction of the Arabidopsis E2F and DP proteins confers their concomitant nuclear translocation and transactivation. Plant Physiol. 128: 833-843 (2002).

Kosugi S, Ohashi Y. DNA binding and dimerization specificity and potential targets for the TCP protein family. Plant J. 30: 337-348 (2002).

Kosugi S, Ohashi Y. Constitutive E2F expression in tobacco plants exhibits altered cell cycle control and morphological change in a cell type-specific manner. Plant Physiol. 132: 2012-2022 (2003).

Kotak S, Larkindale J, Lee U, von Koskull-Döring P, Vierling E, Scharf KD. Complexity of the heat stress response in plants. Curr. Opin. Plant Biol. 10: 310-316 (2007).

Kotak S, Port M, Ganguli A, Bicker F, Von Koskull-Doring P. Characterization of C-terminal domains of Arabidopsis heat stress transcription factors (Hsfs) and identification of a new signature combination of plant class A Hsfs with AHA and NES motifs essential for activator function and intracellular localization. Plant J. 39: 98-112 (2004).

Kotak S, Vierling E, Baumlein H, von Koskull-Doring P. A novel transcriptional cascade regulating expression of heat stress proteins during seed development of Arabidopsis. Plant Cell 19: 182-195 (2007).

Kotake T, Tsuchiya K, Aohara T, Konishi T, Kaneko S, Igarashi K, Samejima M, Tsumuraya Y. An alpha-L-arabinofuranosidase/{beta}-D-xylosidase from immature seeds of radish (Raphanus sativus L.). J. Exp. Bot. 57: 2353-2362 (2006).

Kotchoni SO, Larrimore KE, Mukherjee M, Kempinski CF, Barth C. Alterations in the endogenous ascorbic acid content affect flowering time in Arabidopsis thaliana. Plant Physiol. 149: 803-815 (2009).

Kotilainen M, Helariutta Y, Mehto M, Pollanen E, Albert VA, Elomaa P, Teeri TH. GEG participates in the regulation of cell and organ shape during corolla and carpel development in Gerbera hybrida. Plant Cell 11: 1093-1104 (1999).

Kotting O, Pusch K, Tiessen A, Geigenberger P, Steup M, Ritte G. Identification of a novel enzyme required for starch metabolism in Arabidopsis leaves. The phosphoglucan, water dikinase. Plant Physiol. 137: 242-252 (2005).

Kotting O, Santelia D, Edner C, Eicke S, Marthaler T, Gentry MS, Comparot-Moss S, Chen J, Smith AM, Steup M, Ritte G, Zeeman SC. STARCH-EXCESS4 is a laforin-like phosphoglucan phosphatase required for starch degradation in Arabidopsis thaliana. Plant Cell 21: 334-346 (2009).

Kouri ED, Labrou NE, Garbis SD, Kalliampakou KI, Stedel C, Dimou M, Udvardi MK, Katinakis P, Flemetakis E. Molecular and biochemical characterization of the parvulin-type PPIases in Lotus japonicus. Plant Physiol. 150: 1160-1173 (2009).

Koussevitzky S, Stanne TM, Peto CA, Giap T, Sjogren LL, Zhao Y, Clarke AK, Chory J. An Arabidopsis thaliana virescent mutant reveals a role for ClpR1 in plastid development. Plant Mol. Biol. 63: 85-96 (2007).

Koutaniemi S, Toikka MM, Karkonen A, Mustonen M, Lundell T, Simola LK, Kilpelainen IA, Teeri TH. Characterization of basic p-coumaryl and coniferyl alcohol oxidizingperoxidases from a lignin-forming Picea abies suspension culture. Plant Mol. Biol. 58: 141-157 (2005).

Kovacheva S, Bedard J, Patel R, Dudley P, Twell D, Rios G, Koncz C, Jarvis P. In vivo studies on the roles of Tic110, Tic40 and Hsp93 during chloroplast protein import. Plant J. 41: 412-428 (2005).

Kovacheva S, Bedard J, Wardle A, Patel R, Jarvis P. Further in vivo studies on the role of the molecular chaperone, Hsp93, in plastid protein import. Plant J. 50: 364-379 (2007).

Kovacs L, Damkjaer J, Kereiche S, Ilioaia C, Ruban AV, Boekema EJ, Jansson S, Horton P. Lack of the light-harvesting complex CP24 affects the structure and function of the grana membranes of higher plant chloroplasts. Plant Cell 18: 3106-3120 (2006).

Kovalchuk I, Abramov V, Pogribny I, Kovalchuk O. Molecular aspects of plant adaptation to life in the Chernobyl zone. Plant Physiol. 135: 357-363 (2004).

Kovalchuk I, Filkowski J, Smith K, Kovalchuk O. Reactive oxygen species stimulate homologous recombination in plants. Plant Cell Environ. 26: 1531-1539 (2003).

Kovar DR, Gibbon BC, McCurdy DW, Staiger CJ. Fluorescently-labeled fimbrin decorates a dynamic actin filament network in live plant cells. Planta 213: 390-395 (2001).

Kovermann P, Meyer S, Hortensteiner S, Picco C, Scholz-Starke J, Ravera S, Lee Y, Martinoia E. The Arabidopsis vacuolar malate channel is a member of the ALMT family. Plant J. 52: 1169-1180 (2007).

Kowalczyk M, Sandberg G. Quantitative analysis of indole-3-acetic acid metabolites in Arabidopsis. Plant Physiol. 127: 1845-1853 (2001).

Kowalczyk S, Hadowska E, Piekarska A. Plant ubiquitylation and proteolytic systems, the key elements in hormonal signaling pathways. Postepy. Biochem. 51: 171-187 (2005).

Koyama T, Furutani M, Tasaka M, Ohme-Takagi M. TCP transcription factors control the morphology of shoot lateral organs via negative regulation of the expression of boundary-specific genes in Arabidopsis. Plant Cell 19: 473-484 (2007).

Kraft E, Bostick M, Jacobsen SE, Callis J. ORTH/VIM proteins that regulate DNA methylation are functional ubiquitin E3 ligases. Plant J. 56: 704-715 (2008).

Kraft E, Stone SL, Ma L, Su N, Gao Y, Lau OS, Deng XW, Callis J. Genome analysis and functional characterization of the E2 and RING-type E3 ligase ubiquitination enzymes of Arabidopsis. Plant Physiol. 139: 1597-1611 (2005).

Kraft M, Kuglitsch R, Kwiatkowski J, Frank M, Grossmann K. Indole-3-acetic acid and auxin herbicides up-regulate 9-cis-epoxycarotenoid dioxygenase gene expression and abscisic acid accumulation in cleavers (Galium aparine): interaction with ethylene. J. Exp. Bot. 58: 1497-1503 (2007).

Kramer EM, Hall JC. Evolutionary dynamics of genes controlling floral development. Curr. Opin. Plant Biol. 8: 13-18 (2005).

Kramer U. MTP1 mops up excess zinc in Arabidopsis cells. Trends Plant Sci. 10: 313-315 (2005).

Krause K, Kilbienski I, Mulisch M, Rodiger A, Schafer A, Krupinska K. DNA-binding proteins of the Whirly family in Arabidopsis thaliana are targeted to the organelles. FEBS Lett. 579: 3707-3712 (2005).

Krause M, Durner J. Harpin inactivates mitochondria in Arabidopsis suspension cells. Mol. Plant-Microbe Interact. 17: 131-139 (2004).

Kreft O, Hoefgen R, Hesse H. Functional analysis of cystathionine gamma-synthase in genetically engineered potato plants. Plant Physiol. 131: 1843-1854 (2003).

Kreps JA, Ponappa T, Dong W, Town CD. Molecular basis of alpha-methyltryptophan resistance in amt-1, a mutant of Arabidopsis thaliana with altered tryptophan metabolism. Plant Physiol. 110: 1159-1165 (1996).

Kreps JA, Wu Y, Chang HS, Zhu T, Wang X, Harper JF. Transcriptome changes for Arabidopsis in response to salt, osmotic, and cold stress. Plant Physiol. 130: 2129-2141 (2002).

Kriechbaumer V, Weigang L, Fiesselmann A, Letzel T, Frey M, Gierl A, Glawischnig E. Characterisation of the tryptophan synthase alpha subunit in maize. BMC Plant Biol. 8: 44 (2008).

Krinke O, Flemr M, Vergnolle C, Collin S, Renou JP, Taconnat L, Yu A, Burketova L, Valentova O, Zachowski A, Ruelland E. Phospholipase D activation is an early component of the salicylic acid signaling pathway in Arabidopsis cell suspensions. Plant Physiol. 150: 424-436 (2009).

Krinke O, Ruelland E, Valentova O, Vergnolle C, Renou JP, Taconnat L, Flemr M, Burketova L, Zachowski A. Phosphatidylinositol 4-kinase activation is an early response to salicylic acid in Arabidopsis suspension cells. Plant Physiol. 144: 1347-1359 (2007).

Kris RM, Felder S, Deyholos M, Lambert GM, Hinton J, Botros I, Martel R, Seligmann B, Galbraith DW. High-throughput, high-sensitivity analysis of gene expression in Arabidopsis. Plant Physiol. 144: 1256-1266 (2007).

Krischke M, Loeffler C, Mueller MJ. Biosynthesis of 14,15-dehydro-12-oxo-phytodienoic acid and related cyclopentenones via the phytoprostane D(1) pathway. Phytochemistry 62: 351-358 (2003).

Krishnaswamy L, Zhang J, Peterson T. Reversed end Ds element: a novel tool for chromosome engineering in Arabidopsis. Plant Mol. Biol. 68: 399-411 (2008).

Kristensen C, Morant M, Olsen CE, Ekstrom CT, Galbraith DW, Moller BL, Bak S. Metabolic engineering of dhurrin in transgenic Arabidopsis plants with marginal inadvertent effects on the metabolome and transcriptome. Proc. Natl. Acad. Sci. U.S.A. 102: 1779-1784 (2005).

Krizek BA, Lewis MW, Fletcher JC. RABBIT EARS is a second-whorl repressor of AGAMOUS that maintains spatial boundaries in Arabidopsis flowers. Plant J. 45: 369-383 (2006).

Krizek BA, Sulli C. Mapping sequences required for nuclear localization and the transcriptional activation function of the Arabidopsis protein AINTEGUMENTA. Planta 224: 612-621 (2006).

Krol E, Dziubinska H, Trebacz K. Low-temperature-induced transmembrane potential changes in mesophyll cells of Arabidopsis thaliana, Helianthus annuus and Vicia faba. Physiol. Plant. 120: 265-270 (2004).

Krolikowski KA, Victor JL, Wagler TN, Lolle SJ, Pruitt RE. Isolation and characterization of the Arabidopsis organ fusion gene HOTHEAD. Plant J. 35: 501-511 (2003).

Krom N, Ramakrishna W. Comparative analysis of divergent and convergent gene pairs and their expression patterns in rice, Arabidopsis, and Populus. Plant Physiol. 147: 1763-1773 (2008).

Kropat J, Tottey S, Birkenbihl RP, Depege N, Huijser P, Merchant S. A regulator of nutritional copper signaling in Chlamydomonas is an SBP domain protein that recognizes the GTAC core of copper response element. Proc. Natl. Acad. Sci. U.S.A. 102: 18730-18375 (2005).

Krouk G, Tillard P, Gojon A. Regulation of the high-affinity NO3- uptake system by a NRT1.1-mediated NO3- demand signalling in Arabidopsis. Plant Physiol. 142: 1075-1086 (2006).

Kroymann J, Textor S, Tokuhisa JG, Falk KL, Bartram S, Gershenzon J, Mitchell-Olds T. A gene controlling variation in Arabidopsis glucosinolate composition is part of the methionine chain elongation pathway. Plant Physiol. 127: 1077-1088 (2001).

Krueger S, Niehl A, Lopez Martin MC, Steinhauser D, Donath A, Hildebrandt T, Romero LC, Hoefgen R, Gotor C, Hesse H. Analysis of cytosolic and plastidic serine acetyltransferase mutants and subcellular metabolite distributions suggests interplay of the cellular compartments for cysteine biosynthesis in Arabidopsis. Plant Cell Environ. 32: 349-367 (2009).

Kruft V, Eubel H, Jansch L, Werhahn W, Braun HP. Proteomic approach to identify novel mitochondrial proteins in Arabidopsis. Plant Physiol. 127: 1694-1710 (2001).

Kruger NJ, Huddleston JE, Le Lay P, Brown ND, Ratcliffe RG. Network flux analysis: impact of 13C-substrates on metabolism in Arabidopsis thaliana cell suspension cultures. Phytochemistry 68: 2176-2188 (2007).

Krupkova E, Immerzeel P, Pauly M, Schmulling T. The TUMOROUS SHOOT DEVELOPMENT2 gene of Arabidopsis encoding a putative methyltransferase is required for cell adhesion and co-ordinated plant development. Plant J. 50: 735-750 (2007).

Kruse E, Mock HP, Grimm B. Isolation and characterisation of tobacco (Nicotiana tabacum) cDNA clones encoding proteins involved in magnesium chelation into protoporphyrin IX. Plant Mol. Biol. 35: 1053-1056 (1997).

Krysan P. Ice-cap. A high-throughput method for capturing plant tissue samples for genotype analysis. Plant Physiol. 135: 1162-1169 (2004).

Kuang A, Crispi M, Musgrave ME. Control of seed development in Arabidopsis thaliana by atmospheric oxygen. Plant Cell Environ. 21: 71-78 (1998).

Kuang A, Musgrave ME, Matthews SW. Modification of reproductive development in Arabidopsis thaliana under spaceflight conditions. Planta 198: 588-594 (1996).

Kuang H, Caldwell KS, Meyers BC, Michelmore RW. Frequent sequence exchanges between homologs of RPP8 in Arabidopsis are not necessarily associated with genomic proximity. Plant J. 54: 69-80 (2008).

Kubasek WL, Ausubel FM, Shirley BW. A light-independent developmental mechanism potentiates flavonoid gene expression in Arabidopsis seedlings. Plant Mol. Biol. 37: 217-223 (1998).

Kubasek WL, Shirely BW, McKillop A, Goodman HM, Briggs W, Ausubel FM. Regulation of flavonoid biosynthetic genes in germinating Arabidopsis seedlings. Plant Cell 4: 1229-1236 (1992).

Kubigsteltig I, Laudert D, Weiler EW. Structure and regulation of the Arabidopsis thaliana allene oxide synthase gene. Planta 208: 463-471 (1999).

Kubigsteltig II, Weiler EW. Arabidopsis mutants affected in the transcriptional control of allene oxide synthase, the enzyme catalyzing the entrance step in octadecanoid biosynthesis. Planta 217: 748-757 (2003).

Kubis S, Baldwin A, Patel R, Razzaq A, Dupree P, Lilley K, Kurth J, Leister D, Jarvis P. The Arabidopsis ppi1 mutant is specifically defective in the expression, chloroplast import, and accumulation of photosynthetic proteins. Plant Cell 15: 1859-1871 (2003).

Kubis S, Patel R, Combe J, Bedard J, Kovacheva S, Lilley K, Biehl A, Leister D, Rios G, Koncz C, Jarvis P. Functional specialization amongst the Arabidopsis Toc159 family of chloroplast protein import receptors. Plant Cell 16: 2059-2077 (2004).

Kubo A, Saji H, Tanaka K, Kondo N. Genomic DNA structure of a gene encoding cytosolic ascorbate peroxidase from Arabidopsis thaliana. FEBS Lett. 315: 313-317 (1993).

Kubo A, Saji H, Tanaka K, Kondo N. Expression of Arabidopsis cytosolic ascorbate peroxidase gene in response to ozone or sulfur dioxide. Plant Mol. Biol. 29: 479-489 (1995).

Kubo A, Saji H, Tanaka K, Tanaka K, Kondo N. Cloning and sequencing of a cDNA encoding ascorbate peroxidase from Arabidopsis thaliana. Plant Mol. Biol. 18: 691-701 (1992).

Kubo H, Peeters AJ, Aarts MG, Pereira A, Koornneef M. ANTHOCYANINLESS2, a homeobox gene affecting anthocyanin distribution and root development in Arabidopsis. Plant Cell 11: 1217-1226 (1999).

Kuderova A, Urbankova I, Valkova M, Malbeck J, Brzobohaty B, Nemethova D, Hejatko J. Effects of conditional IPT-dependent cytokinin overproduction on root architecture of Arabidopsis seedlings. Plant Cell Physiol. 49: 570-582 (2008).

Kuhn C, Quick WP, Schulz A, Riesmeier JW, Sonnewald U, Frommer WB. Companion cell-specific inhibition of the potato sucrose transporter SUT1. Plant Cell Environ. 19: 1115-1123 (1996).

Kuhn JM, Boisson-Dernier A, Dizon MB, Maktabi MH, Schroeder JI. The protein phosphatase AtPP2CA negatively regulates abscisic acid signal transduction in Arabidopsis. Plant Physiol. 140: 127-139 (2006).

Kuhn JM, Breton G, Schroeder JI. mRNA metabolism of flowering-time regulators in wild-type Arabidopsis revealed by a nuclear cap binding protein mutant, abh1. Plant J. 50: 1049-1062 (2007).

Kuhn K, Bohne AV, Liere K, Weihe A, Borner T. Arabidopsis phage-type RNA polymerases: accurate in vitro transcription of organellar genes. Plant Cell 19: 959-971 (2007).

Kuittinen H, Aguade M. Nucleotide variation at the CHALCONE ISOMERASE locus in Arabidopsis thaliana. Genetics 155: 863-872 (2000).

Kulheim C, Jansson S. What leads to reduced fitness in non-photochemical quenching mutants?. Physiol. Plant. 125: 202-211 (2005).

Kulma A, Villadsen D, Campbell DG, Meek SE, Harthill JE, Nielsen TH, MacKintosh C. Phosphorylation and 14-3-3 binding of Arabidopsis 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase. Plant J. 37: 654-667 (2004).

Kumar A, Silim SN, Okamoto M, Siddiqi MY, Glass AD. Differential expression of three members of the AMT1 gene family encoding putative high-affinity NH4+ transporters in roots of Oryza sativa subspecies indica. Plant Cell Environ. 26: 907-914 (2003).

Kumar AM, Csankovszki G, Soll D. A second and differentially expressed glutamyl-tRNA reductase gene from Arabidopsis thaliana. Plant Mol. Biol. 30: 419-426 (1996).

Kumar AM, Soll D. Antisense HEMA1 RNA expression inhibits heme and chlorophyll biosynthesis in Arabidopsis. Plant Physiol. 122: 49-56 (2000).

Kumar AM, Soll D. Arabidopsis alternative oxidase sustains Escherichia coli respiration. Proc. Natl. Acad. Sci. U.S.A. 89: 10842-10846 (1992).

Kumar M, Thammannagowda S, Bulone V, Chiang V, Han KH, Joshi CP, Mansfield SD, Mellerowicz E, Sundberg B, Teeri T, Ellis BE. An update on the nomenclature for the cellulose synthase genes in Populus. Trends Plant Sci. 14: 248-254 (2009).

Kumar MA, Chaturvedi S, Soll D. Selective inhibition of HEMA gene expression by photooxidation in Arabidopsis thaliana. Phytochemistry 51: 647-651 (1999).

Kumar R, Raclaru M, Schusseler T, Gruber J, Sadre R, Luhs W, Zarhloul KM, Friedt W, Enders D, Frentzen M, Weier D. Characterisation of plant tocopherol cyclases and their overexpression in transgenic Brassica napus seeds. FEBS Lett. 579: 1357-1364 (2005).

Kumaran MK, Bowman JL, Sundaresan V. YABBY polarity genes mediate the repression of KNOX homeobox genes in Arabidopsis. Plant Cell 14: 2761-2770 (2002).

Kumimoto RW, Adam L, Hymus GJ, Repetti PP, Reuber TL, Marion CM, Hempel FD, Ratcliffe OJ. The nuclear factor Y subunits NF-YB2 and NF-YB3 play additive roles in the promotion of flowering by inductive long-day photoperiods in Arabidopsis. Planta 228: 709-723 (2008).

Kunieda T, Mitsuda N, Ohme-Takagi M, Takeda S, Aida M, Tasaka M, Kondo M, Nishimura M, Hara-Nishimura I. NAC family proteins NARS1/NAC2 and NARS2/NAM in the outer integument regulate embryogenesis in Arabidopsis. Plant Cell 20: 2631-2642 (2008).

Kuno N, Moller SG, Shinomura T, Xu X, Chua NH, Furuya M. The novel MYB protein EARLY-PHYTOCHROME-RESPONSIVE1 is a component of a slave circadian oscillator in Arabidopsis. Plant Cell 15: 2476-2488 (2003).

Kuno N, Muramatsu T, Hamazato F, Furuya M. Identification by large-scale screening of phytochrome-regulated genes in etiolated seedlings of Arabidopsis using a fluorescent differential display technique. Plant Physiol. 122: 15-24 (2000).

Kunst L, Klenz JE, Martinez-Zapater J, Haughn GW. AP2 gene determines the identity of perianth organs in flowers of Arabidopsis thaliana. Plant Cell 1: 1195-1208 (1989).

Kunz BA, Dando PK, Grice DM, Mohr PG, Schenk PM, Cahill DM. UV-induced DNA damage promotes resistance to the biotrophic pathogen Hyaloperonospora parasitica in Arabidopsis. Plant Physiol. 148: 1021-1031 (2008).

Kunze G, Zipfel C, Robatzek S, Niehaus K, Boller T, Felix G. The N terminus of bacterial elongation factor Tu elicits innate immunity in Arabidopsis plants. Plant Cell 16: 3496-3507 (2004).

Kuo SY, Chien LF, Van RC, Yan KH, Liu PF, Chang WC, Wang JK, Pan RL. Purification and subunit determination of H+-pyrophosphatase from endoplasmic reticulum-enriched vesicles of mung bean seedlings. Plant Sci. 169: 847-853 (2005).

Kuper J, Palmer T, Mendel RR, Schwarz G. Mutations in the molybdenum cofactor biosynthetic protein Cnx1G from Arabidopsis thaliana define functions for molybdopterin binding, molybdenum insertion, and molybdenum cofactor stabilization. Proc. Natl. Acad. Sci. U.S.A. 97: 6475-6480 (2000).

Kupke T. Molecular characterization of the 4'-phosphopantothenoylcysteine decarboxylase domain of bacterial Dfp flavoproteins. J. Biol. Chem. 276: 27597-27604 (2001).

Kupke T, Caparros-Martin JA, Malquichagua Salazar KJ, Culianez-Macia FA. Biochemical and physiological characterization of Arabidopsis thaliana AtCoAse: a Nudix CoA hydrolyzing protein that improves plant development. Physiol. Plant. 135: 365-378 (2009).

Kupke T, Hernandez-Acosta P, Culianez-Macia FA. 4'-Phosphopantetheine and coenzyme A biosynthesis in plants. J. Biol. Chem. 278: 38229-38237 (2003).

Kupke T, Hernandez-Acosta P, Steinbacher S, Culianez-Macia FA. Arabidopsis thaliana flavoprotein AtHAL3a catalyzes the decarboxylation of 4'-Phosphopantothenoylcysteine to 4'-phosphopantetheine, a key step in coenzyme A biosynthesis. J. Biol. Chem. 276: 19190-19196 (2001).

Kupper H, Seib LO, Sivaguru M, Hoekenga OA, Kochian LV. A method for cellular localization of gene expression via quantitative in situ hybridization in plants. Plant J. 50: 159-175 (2007).

Kuramae EE, Fenille RC, de Rosa VE. Identification of 14-3-3-like protein in sugarcane (Saccharum officinarum). Genet. Mol. Biol. 24: 43-48 (2001).

Kurasawa K, Matsui A, Yokoyama R, Kuriyama T, Yoshizumi T, Matsui M, Suwabe K, Watanabe M, Nishitani K. The AtXTH28 gene, a xyloglucan endotransglucosylase/hydrolase, is involved in automatic self-pollination in Arabidopsis thaliana. Plant Cell Physiol. 50: 413-422 (2009).

Kurata T, Kawabata-Awai C, Sakuradani E, Shimizu S, Okada K, Wada T. The YORE-YORE gene regulates multiple aspects of epidermal cell differentiation in Arabidopsis. Plant J. 36: 55-66 (2003).

Kurata T, Yamamoto KT. petit1, a conditional growth mutant of Arabidopsis defective in sucrose-dependent elongation growth. Plant Physiol. 118: 793-801 (1998).

Kurczynska EU, Gaj MD, Ujczak A, Mazur E. Histological analysis of direct somatic embryogenesis in Arabidopsis thaliana (L.) Heynh. Planta 226: 619-628 (2007).

Kurdyukov S, Faust A, Nawrath C, Bar S, Voisin D, Efremova N, Franke R, Schreiber L, Saedler H, Metraux JP, Yephremov A. The epidermis-specific extracellular BODYGUARD controls cuticle development and morphogenesis in Arabidopsis. Plant Cell 18: 321-339 (2006).

Kurdyukov S, Faust A, Trenkamp S, Bar S, Franke R, Efremova N, Tietjen K, Schreiber L, Saedler H, Yephremov A. Genetic and biochemical evidence for involvement of HOTHEAD in the biosynthesis of long-chain alpha-,omega-dicarboxylic fatty acids and formation of extracellular matrix. Planta 224: 315-329 (2006).

Kurepa J, Smalle J, Van Montagu M, Inze D. Oxidative stress tolerance and longevity in Arabidopsis: the late-flowering mutant gigantea is tolerant to paraquat. Plant J. 14: 759-764 (1998).

Kurepa J, Toh-E A, Smalle JA. 26S proteasome regulatory particle mutants have increased oxidative stress tolerance. Plant J. 53: 102-114 (2008).

Kurepa J, Wang S, Li Y, Zaitlin D, Pierce AJ, Smalle JA. Loss of 26S proteasome function leads to increased cell size and decreased cell number in Arabidopsis shoot organs. Plant Physiol. 150: 178-189 (2009).

Kurihara D, Matsunaga S, Kawabe A, Fujimoto S, Noda M, Uchiyama S, Fukui K. Aurora kinase is required for chromosome segregation in tobacco BY-2 cells. Plant J. 48: 572-580 (2006).

Kurkela S, Borg-Franck M. Structure and expression of kin2, one of two cold- and ABA-induced genes of Arabidopsis thaliana. Plant Mol. Biol. 19: 689-692 (1992).

Kurkela S, Franck M. Cloning and characterization of a cold- and ABA-inducible Arabidopsis gene. Plant Mol. Biol. 15: 137-144 (1990).

Kuromori T, Hirayama T, Kiyosue Y, Takabe H, Mizukado S, Sakurai T, Akiyama K, Kamiya A, Ito T, Shinozaki K. A collection of 11,800 single-copy Ds transposon insertion lines in Arabidopsis. Plant J. 37: 897-905 (2004).

Kuromori T, Wada T, Kamiya A, Yuguchi M, Yokouchi T, Imura Y, Takabe H, Sakurai T, Akiyama K, Hirayama T, Okada K, Shinozaki K. A trial of phenome analysis using 4000 Ds-insertional mutants in gene-coding regions of Arabidopsis. Plant J. 47: 640-651 (2006).

Kuroyanagi M, Yamada K, Hatsugai N, Kondo M, Nishimura M, Hara-Nishimura I. Vacuolar processing enzyme is essential for mycotoxin-induced cell death in Arabidopsis thaliana. J. Biol. Chem. 280: 32914-32920 (2005).

Kursteiner O, Dupuis I, Kuhlemeier C. The pyruvate decarboxylase1 gene of Arabidopsis is required during anoxia but not other environmental stresses. Plant Physiol. 132: 968-978 (2003).

Kurth J, Varotto C, Pesaresi P, Biehl A, Richly E, Salamini F, Leister D. Gene-sequence-tag expression analyses of 1,800 genes related to chloroplast functions. Planta 215: 101-109 (2002).

Kurup S, Jones HD, Holdsworth MJ. Interactions of the developmental regulator ABI3 with proteins identified from developing Arabidopsis seeds. Plant J. 21: 143-155 (2000).

Kurup S, Runions J, Kohler U, Laplaze L, Hodge S, Haseloff J. Marking cell lineages in living tissues. Plant J. 42: 444-453 (2005).

Kusaba M, Tung CW, Nasrallah ME, Nasrallah JB. Monoallelic expression and dominance interactions in anthers of self-incompatible Arabidopsis lyrata. Plant Physiol. 128: 17-20 (2002).

Kushnir S, Babiychuk E, Storozhenko S, Davey MW, Papenbrock J, De Rycke RR,Engler G, Stephan UW, Lange H, Kispal G, Lill R, Van Montagu MM. A mutation of the mitochondrial ABC transporter Sta1 leads to dwarfism and chlorosis in the Arabidopsis mutant starik. Plant Cell 13: 89-100 (2001).

Kushwaha R, Singh A, Chattopadhyay S. Calmodulin7 plays an important role as transcriptional regulator in Arabidopsis seedling development. Plant Cell 20: 1747-1759 (2008).

Kusnierczyk A, Winge P, Jorstad TS, Troczynska J, Rossiter JT, Bones AM. Towards global understanding of plant defence against aphids - timing and dynamics of early Arabidopsis defence responses to cabbage aphid (Brevicoryne brassicae) attack. Plant Cell Environ. 31: 1097-1115 (2008).

Kusnierczyk A, Winge P, Midelfart H, Armbruster WS, Rossiter JT, Bones AM. Transcriptional responses of Arabidopsis thaliana ecotypes with different glucosinolate profiles after attack by polyphagous Myzus persicae and oligophagous Brevicoryne brassicae. J. Exp. Bot. 58: 2537-2552 (2007).

Kutz A, Muller A, Hennig P, Kaiser WM, Piotrowski M, Weiler EW. A role for nitrilase 3 in the regulation of root morphology in sulphur-starving Arabidopsis thaliana. Plant J. 30: 95-106 (2002).

Kuusk S, Sohlberg JJ, Magnus Eklund D, Sundberg E. Functionally redundant SHI family genes regulate Arabidopsis gynoecium development in a dose-dependent manner. Plant J. 47: 99-111 (2006).

Kuznetsov OA, Hasenstein KH. Intracellular magnetophoresis of amyloplasts and induction of root curvature. Planta 198: 87-94 (1996).

Kwak JM, Kim SA, Lee SK, Oh SA, Byoun CH, Han JK, Nam HG. Insulin-induced maturation of Xenopus oocytes is inhibited by microinjection of a Brassica napus cDNA clone with high similarity to a mammalian receptor for activated protein kinase C. Planta 201: 245-251 (1997).

Kwak JM, Moon JH, Murata Y, Kuchitsu K, Leonhardt N, DeLong A, Schroeder JI. Disruption of a guard cell-expressed protein phosphatase 2A regulatory subunit, RCN1, confers abscisic acid insensitivity in Arabidopsis. Plant Cell 14: 2849-2861 (2002).

Kwak JM, Murata Y, Baizabal-Aguirre VM, Merrill J, Wang M, Kemper A, Hawke SD, Tallman G, Schroeder JI. Dominant negative guard cell K(+) channel mutants reduce inward-rectifying K(+) currents and light-induced stomatal opening in Arabidopsis. Plant Physiol. 127: 473-485 (2001).

Kwak KJ, Kim YO, Kang H. Characterization of transgenic Arabidopsis plants overexpressing GR-RBP4 under high salinity, dehydration, or cold stress. J. Exp. Bot. 56: 3007-3016 (2005).

Kwak MS, Oh MJ, Paek KH, Shin JS, Bae JM. Dissected effect of a transit peptide of the ADP-glucose pyrophosphorylase gene from sweetpotato (ibAGP2) in increasing foreign protein accumulation. Plant Cell Rep. 27: 1359-1367 (2008).

Kwasniewski M, Szarejko I. Molecular cloning and characterization of beta-expansin gene related to root hair formation in barley. Plant Physiol. 141: 1149-1158 (2006).

Kwee HS, Sundaresan V. The NOMEGA gene required for female gametophyte development encodes the putative APC6/CDC16 component of the Anaphase Promoting Complex in Arabidopsis. Plant J. 36: 853-866 (2003).

Kwiatkowska D. Flower primordium formation at the Arabidopsis shoot apex: quantitative analysis of surface geometry and growth. J. Exp. Bot. 57: 571-580 (2006).

Kwiatkowska D. Flowering and apical meristem growth dynamics. J. Exp. Bot. 59: 187-201 (2008).

Kwiatkowska D. Surface growth at the reproductive shoot apex of Arabidopsis thaliana pin-formed 1 and wild type. J. Exp. Bot. 55: 1021-1032 (2004).

Kwok SF, Piekos B, Misera S, Deng XW. A complement of ten essential and pleiotropic Arabidopsis COP/DET/FUS genes is necessary for repression of photomorphogenesis in darkness. Plant Physiol. 110: 731-742 (1996).

Kwon HB, Park SC, Peng HP, Goodman HM, Dewdney J, Shih MC. Identification of a light-responsive region of the nuclear gene encoding the B subunit of chloroplast glyceraldehyde 3-phosphate dehydrogenase from Arabidopsis thaliana. Plant Physiol. 105: 357-367 (1994).

Kwon KC, Cho MH. Deletion of the chloroplast-localized AtTerC gene product in Arabidopsis thaliana leads to loss of the thylakoid membrane and to seedling lethality. Plant J. 55: 428-442 (2008).

Kwon SI, Kim SH, Bhattacharjee S, Noh JJ, Gassmann W. SRFR1, a suppressor of effector-triggered immunity, encodes a conserved tetratricopeptide repeat protein with similarity to transcriptional repressors. Plant J. 57: 109-119 (2009).

Kwon SI, Koczan JM, Gassmann W. Two Arabidopsis srfr (suppressor of rps4-RLD) mutants exhibit avrRps4-specific disease resistance independent of RPS4. Plant J. 40: 366-375 (2004).

Kwon SJ, Jin HC, Lee S, Nam MH, Chung JH, Kwon SI, Ryu CM, Park OK. GDSL lipase-like 1 regulates systemic resistance associated with ethylene signaling in Arabidopsis. Plant J. 58: 235-245 (2009).

Kwon SJ, Kwon SI, Bae MS, Cho EJ, Park OK. Role of the methionine sulfoxide reductase MsrB3 in cold acclimation in Arabidopsis. Plant Cell Physiol. 48: 1713-1723 (2007).

Kwong RW, Bui AQ, Lee H, Kwong LW, Fischer RL, Goldberg RB, Harada JJ. LEAFY COTYLEDON1-LIKE defines a class of regulators essential for embryo development. Plant Cell 15: 5-18 (2003).

Kyozuka J, Harcourt R, Peacock WJ, Dennis ES. Eucalyptus has functional equivalents of the Arabidopsis AP1 gene. Plant Mol. Biol. 35: 573-584 (1997).

La Camera S, Geoffroy P, Samaha H, Ndiaye A, Rahim G, Legrand M, Heitz T. A pathogen-inducible patatin-like lipid acyl hydrolase facilitates fungal and bacterial host colonization in Arabidopsis. Plant J. 44: 810-825 (2005).

Laber B, Maurer W, Hanke C, Grafe S, Ehlert S, Messerschmidt A, Clausen T. Characterization of recombinant Arabidopsis thaliana threonine synthase. Eur. J. Biochem. 263: 212-221 (1999).

LaBrie ST, Crawford NM. A glycine to aspartic acid change in the MoCo domain of nitrate reductase reduces both activity and phosphorylation levels in Arabidopsis. J. Biol. Chem. 269: 14497-14501 (1994).

LaBrie ST, Wilkinson JQ, Tsay YF, Feldmann KA, Crawford NM. Identification of two tungstate-sensitive molybdenum cofactor mutants, chl2 and chl7, of Arabidopsis thaliana. Mol. Gen. Genet. 233: 169-176 (1992).

Laby RJ, Kim D, Gibson SI. The ram1 mutant of Arabidopsis exhibits severely decreased beta-amylase activity. Plant Physiol. 127: 1798-1807 (2001).

Laby RJ, Kincaid MS, Kim D, Gibson SI. The Arabidopsis sugar-insensitive mutants sis4 and sis5 are defective in abscisic acid synthesis and response. Plant J. 23: 587-596 (2000).

Lacomme C, Roby D. Molecular cloning of a sulfotransferase in Arabidopsis thaliana and regulation during development and in response to infection with pathogenic bacteria. Plant Mol. Biol. 30: 995-1008 (1996).

Lafleuriel J, Degroote F, Depeiges A, Picard G. Impact of the loss of AtMSH2 on double-strand break-induced recombination between highly diverged homeologous sequences in Arabidopsis thaliana germinal tissues. Plant Mol. Biol. 63: 833-846 (2007).

Lagace M, Chantha SC, Major G, Matton DP. Fertilization induces strong accumulation of a histone deacetylase (HD2) and of other chromatin-remodeling proteins in restricted areas of the ovules. Plant Mol. Biol. 53: 759-769 (2003).

Lagercrantz U. At the end of the day: a common molecular mechanism for photoperiod responses in plants? J. Exp. Bot. 60: 2501-2515 (2009).

Lahaye T. Illuminating the molecular basis of gene-for-gene resistance; Arabidopsis thaliana RRS1-R and its interaction with Ralstonia solanacearum popP2. Trends Plant Sci. 9: 1-4 (2004).

Lahiri SD, Allison LA. Complementary expression of two plastid-localized sigma-like factors in maize. Plant Physiol. 123: 883-894 (2000).

Lahmy S, Guilleminot J, Cheng CM, Bechtold N, Albert S, Pelletier G, Delseny M, Devic M. DOMINO1, a member of a small plant-specific gene family, encodes a protein essential for nuclear and nucleolar functions. Plant J. 39: 809-820 (2004).

Lahmy S, Guilleminot J, Schmit AC, Pelletier G, Chaboute ME, Devic M. QQT proteins colocalize with microtubules and are essential for early embryo development in Arabidopsis. Plant J. 50: 615-626 (2007).

Lai C, Kunst L, Jetter R. Composition of alkyl esters in the cuticular wax on inflorescence stems of Arabidopsis thaliana cer mutants. Plant J. 50: 189-196 (2007).

Lai CP, Lee CL, Chen PH, Wu SH, Yang CC, Shaw JF. Molecular analyses of the Arabidopsis TUBBY-like protein gene family. Plant Physiol. 134: 1586-1597 (2004).

Lai F, Thacker J, Li Y, Doerner P. Cell division activity determines the magnitude of phosphate starvation responses in Arabidopsis. Plant J. 50: 545-556 (2007).

Lai J, Chen H, Teng K, Zhao Q, Zhang Z, Li Y, Liang L, Xia R, Wu Y, Guo H, Xie Q. RKP, a RING finger E3 ligase induced by BSCTV C4 protein, affects geminivirus infection by regulation of plant cell cycle. Plant J. 57: 905-917 (2009).

Lai KW, Yau CP, Tse YC, Jiang L, Yip WK. Heterologous expression analyses of rice OsCAS in Arabidopsis and in yeast provide evidence for its roles in cyanide detoxification rather than in cysteine synthesis in vivo. J. Exp. Bot. 60: 993-1008 (2009).

Lai LB, Nadeau JA, Lucas J, Lee EK, Nakagawa T, Zhao L, Geisler M, Sack FD. The Arabidopsis R2R3 MYB proteins FOUR LIPS and MYB88 restrict divisions late in the stomatal cell lineage. Plant Cell 17: 2754-2767 (2005).

Lai Z, Ma W, Han B, Liang L, Zhang Y, Hong G, Xue Y. An F-box gene linked to the self-incompatibility (S) locus of Antirrhinum is expressed specifically in pollen and tapetum. Plant Mol. Biol. 50: 29-42 (2002).

Laing WA, Bulley S, Wright M, Cooney J, Jensen D, Barraclough D, Macrae E. A highly specific L-galactose-1-phosphate phosphatase on the path to ascorbate biosynthesis. Proc. Natl. Acad. Sci. U.S.A. 101: 16976-16981 (2004).

Laird J, Armengaud P, Giuntini P, Laval V, Milner JJ. Inappropriate annotation of a key defence marker in Arabidopsis: will the real PR-1 please stand up? Planta 219: 1089-1092 (2004).

Lake JA, Wade RN. Plant-pathogen interactions and elevated CO2: morphological changes in favour of pathogens. J. Exp. Bot. 60: 3123-3131 (2009).

Lake JA, Woodward FI, Quick WP. Long-distance CO2 signalling in plants. J. Exp. Bot. 53: 183-193 (2002).

Lal SK, Giroux MJ, Brendel V, Vallejos CE, Hannah LC. The maize genome contains a helitron insertion. Plant Cell 15: 381-391 (2003).

Lalanne E, Honys D, Johnson A, Borner GH, Lilley KS, Dupree P, Grossniklaus U, Twell D. SETH1 and SETH2, two components of the glycosylphosphatidylinositol anchor biosynthetic pathway, are required for pollen germination and tube growth in Arabidopsis. Plant Cell 16: 229-240 (2004).

Lalanne E, Mathieu C, Roche O, Vedel F, De Pape R. Structure and specific expression of a Nicotiana sylvestris putative amino-acid transporter gene in mature and in vitro germinating pollen. Plant Mol. Biol. 35: 855-864 (1997).

Lalanne E, Twell D. Genetic control of male germ unit organization in Arabidopsis. Plant Physiol. 129: 865-875 (2002).

Laloi C, Mestres-Ortega D, Marco Y, Meyer Y, Reichheld JP. The Arabidopsis cytosolic thioredoxin h5 gene induction by oxidative stress and its W-box-mediated response to pathogen elicitor. Plant Physiol. 134: 1006-1016 (2004).

Laloi C, Przybyla D, Apel K. A genetic approach towards elucidating the biological activity of different reactive oxygen species in Arabidopsis thaliana. J. Exp. Bot. 57: 1719-1724 (2006).

Laloi M, Perret AM, Chatre L, Melser S, Cantrel C, Vaultier MN, Zachowski A, Bathany K, Schmitter JM, Vallet M, Lessire R, Hartmann MA, Moreau P. Insights into the role of specific lipids in the formation and delivery of lipid microdomains to the plasma membrane of plant cells. Plant Physiol. 143: 461-472 (2007).

Lam BC, Sage TL, Bianchi F, Blumwald E. Regulation of ADL6 activity by its associated molecular network. Plant J. 31: 565-576 (2002).

Lam H-M, Coschigano K, Schultz C, Melo-Oliveira R, Tjaden G, Oliveira I, Ngai N, Hsieh M-H, Coruzzi G. Use of Arabidopsis mutants and genes to study amide amino acid biosynthesis. Plant Cell 7: 887-898 (1995).

Lam HM, Hsieh MH, Coruzzi G. Reciprocal regulation of distinct asparagine synthetase genes by light and metabolites in Arabidopsis thaliana. Plant J. 16: 345-353 (1998).

Lam HM, Peng SS, Coruzzi GM. Metabolic regulation of the gene encoding glutamine-dependent asparagine synthetase in Arabidopsis thaliana. Plant Physiol. 106: 1347-1357 (1994).

Lam HM, Wong P, Chan HK, Yam KM, Chen L, Chow CM, Coruzzi GM. Overexpression of the ASN1 gene enhances nitrogen status in seeds of Arabidopsis. Plant Physiol. 132: 926-935 (2003).

Lamblin F, Saladin G, Dehorter B, Cronier D, Grenier E, Lacoux J, Bruyant P, Laine E, Chabbert B, Girault F, Monties B, Morvan C, David H, David A. Overexpression of a heterologous sam gene encoding S-adenosylmethionine synthetase in flax (Linum usitatissimum) cells: Consequences on methylation of lignin precursors and pectins. Physiol. Plant. 112: 223-232 (2001).

Lambrix V, Reichelt M, Mitchell-Olds T, Kliebenstein DJ, Gershenzon J. The Arabidopsis epithiospecifier protein promotes the hydrolysis of glucosinolates to nitriles and influences Trichoplusia ni herbivory. Plant Cell 13: 2793-2807 (2001).

Lamkemeyer P, Laxa M, Collin V, Li W, Finkemeier I, Schottler MA, Holtkamp V, Tognetti VB, Issakidis-Bourguet E, Kandlbinder A, Weis E, Miginiac-Maslow M, Dietz KJ. Peroxiredoxin Q of Arabidopsis thaliana is attached to the thylakoids and functions in context of photosynthesis. Plant J. 45: 968-981 (2006).

Lammens W, Le Roy K, Schroeven L, Van Laere A, Rabijns A, Van den Ende W. Structural insights into glycoside hydrolase family 32 and 68 enzymes: functional implications. J. Exp. Bot. 60: 727-740 (2009).

Lancien M, Martin M, Hsieh MH, Leustek T, Goodman H, Coruzzi GM. Arabidopsis glt1-T mutant defines a role for NADH-GOGAT in the non-photorespiratory ammonium assimilatory pathway. Plant J. 29: 347-358 (2002).

Lancien M, Roberts MR. Regulation of Arabidopsis thaliana 14-3-3 gene expression by gamma-aminobutyric acid. Plant Cell Environ. 29: 1430-1436 (2006).

Landry LG, Chapple CC, Last RL. Arabidopsis mutants lacking phenolic sunscreens exhibit enhanced ultraviolet-B injury and oxidative damage. Plant Physiol. 109: 1159-1166 (1995).

Landry LG, Stapleton AE, Lim J, Hoffman P, Hays JB, Walbot V, Last RL. An Arabidopsis photolyase mutant is hypersensitive to ultraviolet-B radiation. Proc. Natl. Acad. Sci. U.S.A. 94: 328-332 (1997).

Landschutze V, Muller-Rober B, Willmitzer L. Mitochondrial citrate synthase from potato: predominant expression in mature leaves and young flower buds. Planta 196: 756-764 (1995).

Lang C, Popko J, Wirtz M, Hell R, Herschbach C, Kreuzwieser J, Rennenberg H, Mendel RR, Hansch R. Sulphite oxidase as key enzyme for protecting plants against sulphur dioxide. Plant Cell Environ. 30: 447-455 (2007).

Lang V, Palva ET. The expression of a rab-related gene, rab18, is induced by abscisic acid during the cold acclimation process of Arabidopsis thaliana (L.) Heynh. Plant Mol. Biol. 20: 951-962 (1992).

Lange BM, Ghassemian M. Genome organization in Arabidopsis thaliana: a survey for genes involved in isoprenoid and chlorophyll metabolism. Plant Mol. Biol. 51: 925-948 (2003).

Lange PR, Eastmond PJ, Madagan K, Graham IA. An Arabidopsis mutant disrupted in valine catabolism is also compromised in peroxisomal fatty acid beta-oxidation. FEBS Lett. 571: 147-153 (2004).

Langer K, Levchenko V, Fromm J, Geiger D, Steinmeyer R, Lautner S, Ache P, Hedrich R. The poplar K+ channel KPT1 is associated with K+ uptake during stomatal opening and bud development. Plant J. 37: 828-838 (2004).

Langlois-Meurinne M, Gachon CM, Saindrenan P. Pathogen-responsive expression of glycosyltransferase genes UGT73B3 and UGT73B5 is necessary for resistance to Pseudomonas syringae pv tomato in Arabidopsis. Plant Physiol. 139: 1890-1901 (2005).

Langridge J. Arabidopsis thaliana, a plant Drosophila. Bioessays 16: 775-778 (1994).

Lannenpaa M, Janonen I, Holtta-Vuori M, Gardemeister M, Porali I, Sopanen T. A new SBP-box gene BpSPL1 in silver birch (Betula pendula). Physiol. Plant. 120: 491-500 (2004).

Lannenpaa M, Parkkinen S, Jarvinen P, Lemmetyinen J, Vepsalainen S, Savola T, Keinonen K, Keinanen M, Sopanen T. The expression and promoter specificity of the birch homologs for PISTILLATA/GLOBOSA and APETALA3/DEFICIENS. Physiol. Plant. 125: 268-280 (2005).

Lanot A, Hodge D, Jackson RG, George GL, Elias L, Lim EK, Vaistij FE, Bowles DJ. The glucosyltransferase UGT72E2 is responsible for monolignol 4-O-glucoside production in Arabidopsis thaliana. Plant J. 48: 286-295 (2006).

Lanot A, Hodge D, Lim EK, Vaistij FE, Bowles DJ. Redirection of flux through the phenylpropanoid pathway by increased glucosylation of soluble intermediates. Planta 228: 609-616 (2008).

Lanquar V, Lelievre F, Bolte S, Hames C, Alcon C, Neumann D, Vansuyt G, Curie C, Schroder A, Kramer U, Barbier-Brygoo H, Thomine S. Mobilization of vacuolar iron by AtNRAMP3 and AtNRAMP4 is essential for seed germination on low iron. EMBO J. 24: 4041-4051 (2005).

Lao NT, Long D, Kiang S, Coupland G, Shoue DA, Carpita NC, Kavanagh TA. Mutation of a family 8 glycosyltransferase gene alters cell wall carbohydrate composition and causes a humidity-sensitive semi-sterile dwarf phenotype in Arabidopsis. Plant Mol. Biol. 53: 647-661 (2003).

Laohavisit A, Mortimer JC, Demidchik V, Coxon KM, Stancombe MA, Macpherson N, Brownlee C, Hofmann A, Webb AA, Miedema H, Battey NH, Davies JM. Zea mays annexins modulate cytosolic free Ca2+ and generate a Ca2+-permeable conductance. Plant Cell 21: 479-493 (2009).

Lapcík O. Isoflavonoids in non-leguminous taxa: a rarity or a rule? Phytochemistry 68: 2909-2916 (2007).

Lapik YR, Kaufman LS. The Arabidopsis cupin domain protein AtPirin1 interacts with the G protein alpha-subunit GPA1 and regulates seed germination and early seedling development. Plant Cell 15: 1578-1590 (2003).

Laplaze L, Parizot B, Baker A, Ricaud L, Martiniere A, Auguy F, Franche C, Nussaume L, Bogusz D, Haseloff J. GAL4-GFP enhancer trap lines for genetic manipulation of lateral root development in Arabidopsis thaliana. J. Exp. Bot. 56: 2433-2442 (2005).

Lappartient AG, Vidmar JJ, Leustek T, Glass AD, Touraine B. Inter-organ signaling in plants: regulation of ATP sulfurylase and sulfate transporter genes expression in roots mediated by phloem-translocated compound. Plant J. 18: 89-95 (1999).

Lardizabal KD, Metz JG, Sakamoto T, Hutton WC, Pollard MR, Lassner MW. Purification of a jojoba embryo wax synthase, cloning of its cDNA, and production of high levels of wax in seeds of transgenic Arabidopsis. Plant Physiol. 122: 645-656 (2000).

Lariguet P, Fankhauser C. Hypocotyl growth orientation in blue light is determined by phytochrome A inhibition of gravitropism and phototropin promotion of phototropism. Plant J. 40: 826-834 (2004).

Larkin JC, Brown ML, Schiefelbein J. How do cells know what they want to be when they grow up? Lessons from epidermal patterning in Arabidopsis. Annu. Rev. Plant Biol. 54: 403-430 (2003).

Larkin JC, Walker JD, Bolognesi-Winfield AC, Gray JC, Walker AR. Allele-specific interactions between ttg and gl1 during trichome development in Arabidopsis thaliana. Genetics 151: 1591-1604 (1999).

Larkin RM, Alonso JM, Ecker JR, Chory J. GUN4, a regulator of chlorophyll synthesis and intracellular signaling. Science 299: 902-906 (2003).

Larkindale J, Hall JD, Knight MR, Vierling E. Heat stress phenotypes of Arabidopsis mutants implicate multiple signaling pathways in the acquisition of thermotolerance. Plant Physiol. 138: 882-897 (2005).

Larkindale J, Knight MR. Protection against heat stress-induced oxidative damage in Arabidopsis involves calcium, abscisic acid, ethylene, and salicylic acid. Plant Physiol. 128: 682-695 (2002).

Larsen PB, Cancel J, Rounds M, Ochoa V. Arabidopsis ALS1 encodes a root tip and stele localized half type ABC transporter required for root growth in an aluminum toxic environment. Planta 225: 1447-1458 (2007).

Larsen PB, Cancel JD. A recessive mutation in the RUB1-conjugating enzyme, RCE1, reveals a requirement for RUB modification for control of ethylene biosynthesis and proper induction of basic chitinase and PDF1.2 in Arabidopsis. Plant J. 38: 626-638 (2004).

Larsen PB, Cancel JD. Enhanced ethylene responsiveness in the Arabidopsis eer1 mutant results from a loss-of-function mutation in the protein phosphatase 2A A regulatory subunit, RCN1. Plant J. 34: 709-718 (2003).

Larsen PB, Degenhardt J, Tai CY, Stenzler LM, Howell SH, Kochian LV. Aluminum-resistant Arabidopsis mutants that exhibit altered patterns of aluminum accumulation and organic acid release from roots. Plant Physiol. 117: 9-18 (1998).

Larsen PB, Geisler MJ, Jones CA, Williams KM, Cancel JD. ALS3 encodes a phloem-localized ABC transporter-like protein that is required for aluminum tolerance in Arabidopsis. Plant J. 41: 353-363 (2005).

Larsen PB, Tai CY, Kochian LV, Howell SH. Arabidopsis mutants with increased sensitivity to aluminum. Plant Physiol. 110: 743-751 (1996).

Larson TR, Graham IA. A novel technique for the sensitive quantification of acyl CoA esters from plant tissues. Plant J. 25: 115-125 (2001).

Larson-Rabin Z, Li Z, Masson PH, Day CD. FZR2/CCS52A1 expression is a determinant of endoreduplication and cell expansion in Arabidopsis thaliana. Plant Physiol. 149: 874-884 (2009).

Larsson EH, Asp H, Bornman JF. Influence of prior Cd(2+) exposure on the uptake of Cd(2+) and other elements in the phytochelatin-deficient mutant, cad1-3, of Arabidopsis thaliana. J. Exp. Bot. 53: 447-453 (2002).

Larsson EH, Bornman JF, Asp H. Physiological effects of cadmium and UV-B radiation in phytochelatin-deficient Arabidopsis thaliana, cad1-3. Aust. J. Plant Physiol. 28: 505-512 (2001).

Larsson J, Rasmuson-Lestander A. Molecular-cloning of the S-adenosylmethionine synthetase gene in Drosophila melanogaster. FEBS Lett. 342: 329-333 (1994).

Larue CT, Wen J, Walker JC. A microRNA-transcription factor module regulates lateral organ size and patterning in Arabidopsis. Plant J. 58: 450-463 (2009).

Lasanthi-Kudahettige R, Magneschi L, Loreti E, Gonzali S, Licausi F, Novi G, Beretta O, Vitulli F, Alpi A, Perata P. Transcript profiling of the anoxic rice coleoptile. Plant Physiol. 144: 218-231 (2007).

Lasceve G, Leymarie J, Olney MA, Liscum E, Christie JM, Vavasseur A, Briggs WR. Arabidopsis contains at least four independent blue-light-activated signal transduction pathways. Plant Physiol. 120: 605-614 (1999).

Laserna MP, Sanchez RA, Botto JF. Light-related loci controlling seed germination in Ler x Cvi and Bay-0 x Sha recombinant inbred-line populations of Arabidopsis thaliana. Ann. Bot. (Lond.) 102: 631-642 (2008).

Laskar DD, Jourdes M, Patten AM, Helms GL, Davin LB, Lewis NG. The Arabidopsis cinnamoyl CoA reductase irx4 mutant has a delayed but coherent (normal) program of lignification. Plant J. 48: 674-686 (2006).

Lasswell J, Rogg LE, Nelson DC, Rongey C, Bartel B. Cloning and characterization of IAR1, a gene required for auxin conjugate sensitivity in Arabidopsis. Plant Cell 12: 2395-2408 (2000).

Last R, Willmitzer L. Physiology and metabolism: Editorial overview. Curr. Opin. Plant Biol. 4: 179-180 (2001).

Last RL, Bissinger PH, Mahoney DJ, Radwanski ER, Fink GR. Tryptophan mutants in Arabidopsis: the consequences of duplicated tryptophan synthase beta genes. Plant Cell 3: 345-358 (1991).

Latijnhouwers M, Gillespie T, Boevink P, Kriechbaumer V, Hawes C, Carvalho CM. Localization and domain characterization of Arabidopsis golgin candidates. J. Exp. Bot. 58: 4373-4386 (2007).

Latijnhouwers M, Hawes C, Carvalho C. Holding it all together? Candidate proteins for the plant Golgi matrix. Curr. Opin. Plant Biol. 8: 632-639 (2005).

Latijnhouwers M, Hawes C, Carvalho C, Oparka K, Gillingham AK, Boevink P. An Arabidopsis GRIP domain protein locates to the trans-Golgi and binds the small GTPase ARL1. Plant J. 44: 459-470 (2005).

Latorre KA, Harris DM, Rundle SJ. Differential expression of three Arabidopsis genes encoding the B' regulatory subunit of protein phosphatase 2A. Eur. J. Biochem. 245: 156-163 (1997).

Latvala-Kilby SM, Kilby NJ. Uncovering the post-embryonic role of embryo essential genes in Arabidopsis using the controlled induction of visibly marked genetic mosaics: EMB506, an illustration. Plant Mol. Biol. 61: 179-184 (2006).

Latz A, Becker D, Hekman M, Muller T, Beyhl D, Marten I, Eing C, Fischer A, Dunkel M, Bertl A, Rapp UR, Hedrich R. TPK1, a Ca(2+)-regulated Arabidopsis vacuole two-pore K(+) channel is activated by 14-3-3 proteins. Plant J. 52: 449-459 (2007).

Laubinger S, Fittinghoff K, Hoecker U. The SPA quartet: a family of WD-repeat proteins with a central role in suppression of photomorphogenesis in Arabidopsis. Plant Cell 16: 2293-2306 (2004).

Laubinger S, Hoecker U. The SPA1-like proteins SPA3 and SPA4 repress photomorphogenesis in the light. Plant J. 35: 373-385 (2003).

Laudert D, Schaller F, Weiler EW. Transgenic Nicotiana tabacum and Arabidopsis thaliana plants overexpressing allene oxide synthase. Planta 211: 163-165 (2000).

Laufs P, Grandjean O, Jonak C, Kieu K, Traas J. Cellular parameters of the shoot apical meristem in Arabidopsis. Plant Cell 10: 1375-1390 (1998).

Laugesen S, Messinese E, Hem S, Pichereaux C, Grat S, Ranjeva R, Rossignol M, Bono JJ. Phosphoproteins analysis in plants: a proteomic approach. Phytochemistry 67: 2208-2214 (2006).

Launholt D, Merkle T, Houben A, Schulz A, Grasser KD. Arabidopsis chromatin-associated HMGA and HMGB use different nuclear targeting signals and display highly dynamic localization within the nucleus. Plant Cell 18: 2904-2918 (2006).

Lauri A, Xing S, Heidmann I, Saedler H, Zachgo S. The pollen-specific DEFH125 promoter from Antirrhinum is bound in vivo by the MADS-box proteins DEFICIENS and GLOBOSA. Planta 224: 61-71 (2006).

Laurie DA. Comparative genetics of flowering time. Plant Mol. Biol. 35: 167-177 (1997).

Laurie DA, Devos KM. Trends in comparative genetics and their potential impacts on wheat and barley research. Plant Mol. Biol. 48: 729-740 (2002).

Lauter FR, Ninnemann O, Bucher M, Riesmeier JW, Frommer WB. Preferential expression of an ammonium transporter and of two putative nitrate transporters in root hairs of tomato. Proc. Natl. Acad. Sci. U.S.A. 93: 8139-8144 (1996).

Lauterbach C, Niedermeier M, Besenbeck R, Stadler R, Sauer N. Immunolocalization of the PmSUC1 sucrose transporter in Plantago major flowers and reporter-gene analyses of the PmSUC1 promoter suggest a role in sucrose release from the inner integument. Plant Biol. (Stuttg.) 9: 357-365 (2007).

Laval V, Koroleva OA, Murphy E, Lu C, Milner JJ, Hooks MA, Tomos AD. Distribution of actin gene isoforms in the Arabidopsis leaf measured in microsamples from intact individual cells. Planta 215: 287-292 (2002).

Laval V, Masclaux F, Serin A, Carriere M, Roldan C, Devic M, Pont-Lezica RF, Galaud JP. Seed germination is blocked in Arabidopsis putative vacuolar sorting receptor (atbp80) antisense transformants. J. Exp. Bot. 54: 213-221 (2003).

Lavy M, Bracha-Drori K, Sternberg H, Yalovsky S. A cell-specific, prenylation-independent mechanism regulates targeting of type II RACs. Plant Cell 14: 2431-2450 (2002).

Lavy M, Yalovsky S. Association of Arabidopsis type-II ROPs with the plasma membrane requires a conserved C-terminal sequence motif and a proximal polybasic domain. Plant J. 46: 934-947 (2006).

Lawand S, Dorne AJ, Long D, Coupland G, Mache R, Carol P. Arabidopsis A BOUT DE SOUFFLE, which is homologous with mammalian carnitine acyl carrier, is required for postembryonic growth in the light. Plant Cell 14: 2161-2173 (2002).

Lawit SJ, O'Grady K, Gurley WB, Czarnecka-Verner E. Yeast two-hybrid map of Arabidopsis TFIID. Plant Mol. Biol. 64: 73-87 (2007).

Lawrence GJ, Finnegan EJ, Ayliffe MA, Ellis JG. The L6 gene for flax rust resistance is related to the Arabidopsis bacterial resistance gene RPS2 and the tobacco viral resistance gene N. Plant Cell 7: 1195-1206 (1995).

Lawrence RJ, Pikaard CS. Transgene-induced RNA interference: a strategy for overcoming gene redundancy in polyploids to generate loss-of-function mutations. Plant J. 36: 114-121 (2003).

Laxmi A, Paul LK, Raychaudhuri A, Peters JL, Khurana JP. Arabidopsis cytokinin-resistant mutant, cnr1, displays altered auxin responses and sugar sensitivity. Plant Mol. Biol. 62: 409-425 (2006).

Lazar G, Goodman HM. The Arabidopsis splicing factor SR1 is regulated by alternative splicing. Plant Mol. Biol. 42: 571-581 (2000).

Lazaro A, Gomez-Zambrano A, Lopez-Gonzalez L, Pineiro M, Jarillo JA. Mutations in the Arabidopsis SWC6 gene, encoding a component of the SWR1 chromatin remodelling complex, accelerate flowering time and alter leaf and flower development. J. Exp. Bot. 59: 653-666 (2008).

Le J, Vandenbussche F, Van Der Straeten D, Verbelen JP. Position and cell type-dependent microtubule reorientation characterizes the early response of the Arabidopsis root epidermis to ethylene. Physiol. Plant. 121: 513-519 (2004).

Le Jean M, Schikora A, Mari S, Briat JF, Curie C. A loss-of-function mutation in AtYSL1 reveals its role in iron and nicotianamine seed loading. Plant J. 44: 769-782 (2005).

Le Lay P, Isaure MP, Sarry JE, Kuhn L, Fayard B, Le Bail JL, Bastien O, Garin J, Roby C, Bourguignon J. Metabolomic, proteomic and biophysical analyses of Arabidopsis thaliana cells exposed to a caesium stress. Influence of potassium supply. Biochimie 88: 1533-1547 (2006).

Lea PJ, Miflin BJ. Glutamate synthase and the synthesis of glutamate in plants. Plant Physiol. Biochem. 41: 555-564 (2003).

Lea US, Slimestad R, Smedvig P, Lillo C. Nitrogen deficiency enhances expression of specific MYB and bHLH transcription factors and accumulation of end products in the flavonoid pathway. Planta 225: 1245-1253 (2007).

Learned RM. Light suppresses 3-hydroxy-3-methylglutaryl coenzyme A reductase gene expression in Arabidopsis thaliana. Plant Physiol. 110: 645-655 (1996).

Lease KA, Walker JC. The Arabidopsis unannotated secreted peptide database, a resource for plant peptidomics. Plant Physiol. 142: 831-838 (2006).

Leasure CD, Fiume E, Fletcher JC. The essential gene EMB1611 maintains shoot apical meristem function during Arabidopsis development. Plant J. 57: 579-592 (2009).

Lebas M, Axelos M. A cDNA encoding a new GTP-binding protein of the ADP-ribosylation factor family from Arabidopsis. Plant Physiol. 106: 809-810 (1994).

Lebaudy A, Hosy E, Simonneau T, Sentenac H, Thibaud JB, Dreyer I. Heteromeric K+ channels in plants. Plant J. 54: 1076-1082 (2008).

Lebaudy A, Vavasseur A, Hosy E, Dreyer I, Leonhardt N, Thibaud JB, Very AA, Simonneau T, Sentenac H. Plant adaptation to fluctuating environment and biomass production are strongly dependent on guard cell potassium channels. Proc. Natl. Acad. Sci. U.S.A. 105: 5271-5276 (2008).

Lebedev N, Van Cleve B, Armstrong G, Apel K. Chlorophyll synthesis in a deetiolated (det340) mutant of Arabidopsis without NADPH-protochlorophyllide (PChlide) oxidoreductase (POR) a and photoactive PChlide-F655. Plant Cell 7: 2081-2090 (1995).

Leboeuf E, Guillon F, Thoiron S, Lahaye M. Biochemical and immunohistochemical analysis of pectic polysaccharides in the cell walls of Arabidopsis mutant QUASIMODO 1 suspension-cultured cells: implications for cell adhesion. J. Exp. Bot. 56: 3171-3182 (2005).

Leboeuf E, Thoiron S, Lahaye M. Physico-chemical characteristics of cell walls from Arabidopsis thaliana microcalli showing different adhesion strengths. J. Exp. Bot. 55: 2087-2097 (2004).

Lechner E, Achard P, Vansiri A, Potuschak T, Genschik P. F-box proteins everywhere. Curr. Opin. Plant Biol. 9: 631-638 (2006).

Lechner L, Pereyra-Irujo GA, Granier C, Aguirrezabal LA. Rewatering plants after a long water-deficit treatment reveals that leaf epidermal cells retain their ability to expand after the leaf has apparently reached its final size. Ann. Bot. (Lond.) 101: 1007-1015 (2008).

Lechtenberg B, Schubert D, Forsbach A, Gils M, Schmidt R. Neither inverted repeat T-DNA configurations nor arrangements of tandemly repeated transgenes are sufficient to trigger transgene silencing. Plant J. 34: 507-517 (2003).

Leclercq J, Adams-Phillips LC, Zegzouti H, Jones B, Latche A, Giovannoni JJ, Pech JC, Bouzayen M. LeCTR1, a tomato CTR1-like gene, demonstrates ethylene signaling ability in Arabidopsis and novel expression patterns in tomato. Plant Physiol. 130: 1132-1142 (2002).

LeClere S, Bartel B. A library of Arabidopsis 35S-cDNA lines for identifying novel mutants. Plant Mol. Biol. 46: 695-703 (2001).

LeClere S, Rampey RA, Bartel B. IAR4, a gene required for auxin conjugate sensitivity in Arabidopsis, encodes a pyruvate dehydrogenase E1alpha homolog. Plant Physiol. 135: 989-999 (2004).

Ledford HK, Niyogi KK. Singlet oxygen and photo-oxidative stress management in plants and algae. Plant Cell Environ. 28: 1037-1045 (2005).

LeDuc DL, Tarun AS, Montes-Bayon M, Meija J, Malit MF, Wu CP, AbdelSamie M, Chiang CY, Tagmount A, DeSouza M, Neuhierl B, Bock A, Caruso J, Terry N. Overexpression of selenocysteine methyltransferase in Arabidopsis and Indian mustard increases selenium tolerance and accumulation. Plant Physiol. 135: 377-383 (2004).

Lee BH, Henderson DA, Zhu JK. The Arabidopsis cold-responsive transcriptome and its regulation by ICE1. Plant Cell 17: 3155-3175 (2005).

Lee BH, Johnston R, Yang Y, Gallavotti A, Kojima M, Travencolo BA, Costa Lda F, Sakakibara H, Jackson D. Studies of aberrant phyllotaxy1 mutants of maize indicate complex interactions between auxin and cytokinin signaling in the shoot apical meristem. Plant Physiol. 150: 205-216 (2009).

Lee BH, Kapoor A, Zhu J, Zhu JK. STABILIZED1, a stress-upregulated nuclear protein, is required for pre-mRNA splicing, mRNA turnover, and stress tolerance in Arabidopsis. Plant Cell 18: 1736-1749 (2006).

Lee BH, Lee H, Xiong L, Zhu JK. A mitochondrial complex I defect impairs cold-regulated nuclear gene expression. Plant Cell 14: 1235-1251 (2002).

Lee C, O'Neill MA, Tsumuraya Y, Darvill AG, Ye ZH. The irregular xylem9 mutant is deficient in xylan xylosyltransferase activity. Plant Cell Physiol. 48: 1624-1634 (2007).

Lee C, Teng Q, Huang W, Zhong R, Ye ZH. Down-regulation of PoGT47C expression in poplar results in a reduced glucuronoxylan content and an increased wood digestibility by cellulase. Plant Cell Physiol. 50: 1075-1089 (2009).

Lee C, Teng Q, Huang W, Zhong R, Ye ZH. The F8H glycosyltransferase is a functional paralog of FRA8 involved in glucuronoxylan biosynthesis in Arabidopsis. Plant Cell Physiol. 50: 812-827 (2009).

Lee C, Zhong R, Richardson EA, Himmelsbach DS, McPhail BT, Ye ZH. The PARVUS gene is expressed in cells undergoing secondary wall thickening and is essential for glucuronoxylan biosynthesis. Plant Cell Physiol. 48: 1659-1672 (2007).

Lee CF, Pu HY, Wang LC, Sayler RJ, Yeh CH, Wu SJ. Mutation in a homolog of yeast Vps53p accounts for the heat and osmotic hypersensitive phenotypes in Arabidopsis hit1-1 mutant. Planta 224: 330-338 (2006).

Lee CP, Eubel H, O'Toole N, Millar AH. Heterogeneity of the mitochondrial proteome for photosynthetic and non-photosynthetic Arabidopsis metabolism. Mol. Cell. Proteomics 7: 1297-1316 (2008).

Lee D, Meyer K, Chapple C, Douglas CJ. Antisense suppression of 4-coumarate:coenzyme A ligase activity in Arabidopsis leads to altered lignin subunit composition. Plant Cell 9: 1985-1998 (1997).

Lee DA, Chen A, Schroeder JI. ars1, an Arabidopsis mutant exhibiting increased tolerance to arsenate and increased phosphate uptake. Plant J. 35: 637-646 (2003).

Lee DW, Kim JK, Lee S, Choi S, Kim S, Hwang I. Arabidopsis nuclear-encoded plastid transit peptides contain multiple sequence subgroups with distinctive chloroplast-targeting sequence motifs. Plant Cell 20: 1603-1622 (2008).

Lee DW, Lee S, Lee GJ, Lee KH, Kim S, Cheong GW, Hwang I. Functional characterization of sequence motifs in the transit peptide of Arabidopsis RbcS. Plant Physiol. 140: 466-483 (2006).

Lee EJ, Koizumi N, Sano H. Identification of genes that are up-regulated in concert during sugar depletion in Arabidopsis. Plant Cell Environ. 27: 337-345 (2004).

Lee EK, Kwon M, Ko JH, Yi H, Hwang MG, Chang S, Cho MH. Binding of sulfonylurea by AtMRP5, an Arabidopsis multidrug resistance-related protein that functions in salt tolerance. Plant Physiol. 134: 528-538 (2004).

Lee GJ, Kim H, Kang H, Jang M, Lee DW, Lee S, Hwang I. EpsinR2 interacts with clathrin, adaptor protein-3, AtVTI12, and phosphatidylinositol-3-phosphate. Implications for EpsinR2 function in protein trafficking in plant cells. Plant Physiol. 143: 1561-1575 (2007).

Lee H, Lee JS, Noh EW, Bae EK, Choi YI, Han MS. Generation and analysis of expressed sequence tags from poplar (Populus alba x P-tremula var. glandulosa) suspension cells. Plant Sci. 169: 1118-1124 (2005).

Lee H, Xiong L, Ishitani M, Stevenson B, Zhu JK. Cold-regulated gene expression and freezing tolerance in an Arabidopsis thaliana mutant. Plant J. 17: 301-308 (1999).

Lee HK, Cho SK, Son O, Xu Z, Hwang I, Kim WT. Drought stress-induced Rma1H1, a RING membrane-anchor E3 ubiquitin ligase homolog, regulates aquaporin levels via ubiquitination in transgenic Arabidopsis plants. Plant Cell 21: 622-641 (2009).

Lee HY, Bahn SC, Kang YM, Lee KH, Kim HJ, Noh EK, Palta JP, Shin JS, Ryu SB. Secretory low molecular weight phospholipase A(2) plays important roles in cell elongation and shoot gravitropism in Arabidopsis. Plant Cell 15: 1990-2002 (2003).

Lee J, Bae H, Jeong J, Lee JY, Yang YY, Hwang I, Martinoia E, Lee Y. Functional expression of a bacterial heavy metal transporter in Arabidopsis enhances resistance to and decreases uptake of heavy metals. Plant Physiol. 133: 589-596 (2003).

Lee J, He K, Stolc V, Lee H, Figueroa P, Gao Y, Tongprasit W, Zhao H, Lee I, Deng XW. Analysis of transcription factor HY5 genomic binding sites revealed its hierarchical role in light regulation of development. Plant Cell 19: 731-749 (2007).

Lee J, Shim D, Song WY, Hwang I, Lee Y. Arabidopsis metallothioneins 2a and 3 enhance resistance to cadmium when expressed in Vicia faba guard cells. Plant Mol. Biol. 54: 805-815 (2004).

Lee JH, Cho YS, Yoon HS, Suh MC, Moon J, Lee I, Weigel D, Yun CH, Kim JK. Conservation and divergence of FCA function between Arabidopsis and rice. Plant Mol. Biol. 58: 823-838 (2005).

Lee JH, Hong JP, Oh SK, Lee S, Choi D, Kim WT. The ethylene-responsive factor like protein 1 (CaERFLP1) of hot pepper (Capsicum annuum L.) interacts in vitro with both GCC and DRE/CRT sequences with different binding affinities: possible biological roles of CaERFLP1 in response to pathogen … Plant Mol. Biol. 55: 61-81 (2004).

Lee JH, Kim DM, Lee JH, Kim J, Bang JW, Kim WT, Pai HS. Functional characterization of NtCEF1, an AP2/EREBP-type transcriptional activator highly expressed in tobacco callus. Planta 222: 211-224 (2005).

Lee JH, Kim WT. Molecular and biochemical characterization of VR-EILs encoding mung bean ETHYLENE INSENSITIVE3-LIKE proteins. Plant Physiol. 132: 1475-1488 (2003).

Lee JJ, Hassan OS, Gao W, Wei NE, Kohel RJ, Chen XY, Payton P, Sze SH, Stelly DM, Chen ZJ. Developmental and gene expression analyses of a cotton naked seed mutant. Planta 223: 418-432 (2006).

Lee JJ, Woodward AW, Chen ZJ. Gene expression changes and early events in cotton fibre development. Ann. Bot. (Lond.) 100: 1391-1401 (2007).

Lee JR, Jang HH, Park JH, Jung JH, Lee SS, Park SK, Chi YH, Moon JC, Lee YM, Kim SY, Kim JY, Yun DJ, Cho MJ, Lee KO, Lee SY. Cloning of two splice variants of the rice PTS1 receptor, OsPex5pL and OsPex5pS, and their functional characterization using pex5-deficient yeast and Arabidopsis. Plant J. 47: 457-466 (2006).

Lee JS, Wang S, Sritubtim S, Chen JG, Ellis BE. Arabidopsis mitogen-activated protein kinase MPK12 interacts with the MAPK phosphatase IBR5 and regulates auxin signaling. Plant J. 57: 975-985 (2009).

Lee JT, Prasad V, Yang PT, Wu JF, Ho THD, Charng YY, Chan MT. Expression of Arabidopsis CBF1 regulated by an ABA/stress inducible promoter in transgenic tomato confers stress tolerance without affecting yield. Plant Cell Environ. 26: 1181-1190 (2003).

Lee JY, Baum SF, Alvarez J, Patel A, Chitwood DH, Bowman JL. Activation of CRABS CLAW in the nectaries and carpels of Arabidopsis. Plant Cell 17: 25-36 (2005).

Lee JY, Lee DH. Use of serial analysis of gene expression technology to reveal changes in gene expression in Arabidopsis pollen undergoing cold stress. Plant Physiol. 132: 517-529 (2003).

Lee JY, Taoka K, Yoo BC, Ben-Nissan G, Kim DJ, Lucas WJ. Plasmodesmal-associated protein kinase in tobacco and Arabidopsis recognizes a subset of non-cell-autonomous proteins. Plant Cell 17: 2817-2831 (2005).

Lee KJ, Sakata Y, Mau SL, Pettolino F, Bacic A, Quatrano RS, Knight CD, Knox JP. Arabinogalactan proteins are required for apical cell extension in the moss Physcomitrella patens. Plant Cell 17: 3051-3065 (2005).

Lee M, Huang T, Toro-Ramos T, Fraga M, Last RL, Jander G. Reduced activity of Arabidopsis thaliana HMT2, a methionine biosynthetic enzyme, increases seed methionine content. Plant J. 54: 310-320 (2008).

Lee M, Lee K, Lee J, Noh EW, Lee Y. AtPDR12 contributes to lead resistance in Arabidopsis. Plant Physiol. 138: 827-836 (2005).

Lee M, Leustek T. Identification of the gene encoding homoserine kinase from Arabidopsis thaliana and characterization of the recombinant enzyme derived from the gene. Arch. Biochem. Biophys. 372: 135-142 (1999).

Lee M, Martin MN, Hudson AO, Lee J, Muhitch MJ, Leustek T. Methionine and threonine synthesis are limited by homoserine availability and not the activity of homoserine kinase in Arabidopsis thaliana. Plant J. 41: 685-696 (2005).

Lee MH, Kim B, Song SK, Heo JO, Yu NI, Lee SA, Kim M, Kim DG, Sohn SO, Lim CE, Chang KS, Lee MM, Lim J. Large-scale analysis of the GRAS gene family in Arabidopsis thaliana. Plant Mol. Biol. 67: 659-670 (2008).

Lee MH, Min MK, Lee YJ, Jin JB, Shin DH, Kim DH, Lee KH, Hwang I. ADP-ribosylation factor 1 of Arabidopsis plays a critical role in intracellular trafficking and maintenance of endoplasmic reticulum morphology in Arabidopsis. Plant Physiol. 129: 1507-1520 (2002).

Lee MM, Schiefelbein J. WEREWOLF, a MYB-related protein in Arabidopsis, is a position- dependent regulator of epidermal cell patterning. Cell 99: 473-483 (1999).

Lee MM, Schiefelbein J. Cell pattern in the Arabidopsis root epidermis determined by lateral inhibition with feedback. Plant Cell 14: 611-618 (2002).

Lee MW, Jelenska J, Greenberg JT. Arabidopsis proteins important for modulating defense responses to Pseudomonas syringae that secrete HopW1-1. Plant J. 54: 452-465 (2008).

Lee S, Jeon JS, An K, Moon YH, Lee S, Chung YY, An G. Alteration of floral organ identity in rice through ectopic expression of OsMADS16. Planta 217: 904-911 (2003).

Lee S, Kim J, Han JJ, Han MJ, An G. Functional analyses of the flowering time gene OsMADS50, the putative SUPPRESSOR OF OVEREXPRESSION OF CO 1/AGAMOUS-LIKE 20 (SOC1/AGL20) ortholog in rice. Plant J. 38: 754-764 (2004).

Lee S, Korban SS. Transcriptional regulation of Arabidopsis thaliana phytochelatin synthase (AtPCS1) by cadmium during early stages of plant development. Planta 215: 689-693 (2002).

Lee S, Lee EJ, Yang EJ, Lee JE, Park AR, Song WH, Park OK. Proteomic identification of annexins, calcium-dependent membrane binding proteins that mediate osmotic stress and abscisic acid signal transduction in Arabidopsis. Plant Cell 16: 1378-1391 (2004).

Lee S, Leustek T. APS kinase from Arabidopsis thaliana: genomic organization, expression, and kinetic analysis of the recombinant enzyme. Biochem. Biophys. Res. Commun. 247: 171-175 (1998).

Lee S, Moon JS, Ko TS, Petros D, Goldsbrough PB, Korban SS. Overexpression of Arabidopsis phytochelatin synthase paradoxically leads to hypersensitivity to cadmium stress. Plant Physiol. 131: 656-663 (2003).

Lee SB, Go YS, Bae HJ, Park JH, Cho SH, Cho HJ, Lee DS, Park OK, Hwang I, Suh MC. Disruption of glycosylphosphatidylinositol-anchored lipid transfer protein gene altered cuticular lipid composition, increased plastoglobules, and enhanced susceptibility to infection by the fungal pathogen Alternaria brassicicola. Plant Physiol. 150: 42-54 (2009).

Lee SC, Choi HW, Hwang IS, Choi DS, Hwang BK. Functional roles of the pepper pathogen-induced bZIP transcription factor, CAbZIP1, in enhanced resistance to pathogen infection and environmental stresses. Planta 224: 1209-1225 (2006).

Lee SC, Hwang BK. CASAR82A, a pathogen-induced pepper SAR8.2, exhibits an antifungal activity and its overexpression enhances disease resistance and stress tolerance. Plant Mol. Biol. 61: 95-109 (2006).

Lee SC, Hwang BK. Functional roles of the pepper antimicrobial protein gene, CaAMP1, in abscisic acid signaling, and salt and drought tolerance in Arabidopsis. Planta 229: 383-391 (2009).

Lee SC, Hwang IS, Choi HW, Hwang BK. Involvement of the pepper antimicrobial protein CaAMP1 gene in broad spectrum disease resistance. Plant Physiol. 148: 1004-1020 (2008).

Lee SC, Kim SH, An SH, Yi SY, Hwang BK. Identification and functional expression of the pepper pathogen-induced gene, CAPIP2, involved in disease resistance and drought and salt stress tolerance. Plant Mol. Biol. 62: 151-164 (2006).

Lee SH, Cho HT. PINOID positively regulates auxin efflux in Arabidopsis root hair cells and tobacco cells. Plant Cell 18: 1604-1616 (2006).

Lee SH, Kim HB, An CS. Structures and expression patterns of two cDNA clones encoding S-adenosyl-L-methionine synthetase from the root nodule of Elaeagnus umbellata. Aust. J. Plant Physiol. 28: 951-957 (2001).

Lee SM, Kim HS, Han HJ, Moon BC, Kim CY, Harper JF, Chung WS. Identification of a calmodulin-regulated autoinhibited Ca(2+)-ATPase (ACA11) that is localized to vacuole membranes in Arabidopsis. FEBS Lett. 581: 3943-3949 (2007).

Lee SS, Cho HS, Yoon GM, Ahn JW, Kim HH, Pai HS. Interaction of NtCDPK1 calcium-dependent protein kinase with NtRpn3 regulatory subunit of the 26S proteasome in Nicotiana tabacum. Plant J. 33: 825-840 (2003).

Lee TF, McNellis TW. Evidence that the BONZAI1/COPINE1 protein is a calcium- and pathogen-responsive defense suppressor. Plant Mol. Biol. 69: 155-166 (2009).

Lee U, Wie C, Escobar M, Williams B, Hong SW, Vierling E. Genetic analysis reveals domain interactions of Arabidopsis Hsp100/ClpB and cooperation with the small heat shock protein chaperone system. Plant Cell 17: 559-571 (2005).

Lee U, Wie C, Fernandez BO, Feelisch M, Vierling E. Modulation of nitrosative stress by S-nitrosoglutathione reductase is critical for thermotolerance and plant growth in Arabidopsis. Plant Cell 20: 786-802 (2008).

Lee WY, Lee D, Chung WI, Kwon CS. Arabidopsis ING and Alfin1-like protein families localize to the nucleus and bind to H3K4me3/2 via plant homeodomain fingers. Plant J. 58: 511-524 (2009).

Lee Y, Choi D, Kende H. Expansins: ever-expanding numbers and functions. Curr. Opin. Plant Biol. 4: 527-532 (2001).

Lee Y, Choi YA, Hwang ID, Kim SG, Kwon YM. cDNA cloning of two isoforms of ornithine carbamoyltransferase from Canavalia lineata leaves and the effect of site-directed mutagenesis of the carbamoyl phosphate binding site. Plant Mol. Biol. 46: 651-660 (2001).

Lee Y, Kim ES, Choi Y, Hwang I, Staiger CJ, Chung YY, Lee Y. The Arabidopsis phosphatidylinositol-3-kinase is important for pollen development. Plant Physiol. 147: 1886-1897 (2008).

Lee Y, Kim YW, Jeon BW, Park KY, Suh SJ, Seo J, Kwak JM, Martinoia E, Hwang I, Lee Y. Phosphatidylinositol 4,5-bisphosphate is important for stomatal opening. Plant J. 52: 803-816 (2007).

Lee Y, Lloyd AM, Roux SJ. Antisense expression of the CK2 alpha-subunit gene in Arabidopsis. Effects on light-regulated gene expression and plant growth. Plant Physiol. 119: 989-1000 (1999).

Lee Y, Yoo SK, Lee JS, Kwon YM. Genomic structure of ornithine carbamoyltransferase gene from Canavalia lineata. Mol. Cells 10: 480-485 (2000).

Lee YH, Chun JY. A new homeodomain-leucine zipper gene from Arabidopsis thaliana induced by water stress and abscisic acid treatment. Plant Mol. Biol. 37: 377-384 (1998).

Lee YH, Foster J, Chen J, Voll LM, Weber AP, Tegeder M. AAP1 transports uncharged amino acids into roots of Arabidopsis. Plant J. 50: 305-319 (2007).

Lee YH, Tegeder M. Selective expression of a novel high-affinity transport system for acidic and neutral amino acids in the tapetum cells of Arabidopsis flowers. Plant J. 40: 60-74 (2004).

Lee YR, Liu B. Cytoskeletal motors in Arabidopsis. Sixty-one kinesins and seventeen myosins. Plant Physiol. 136: 3877-3883 (2004).

Lee YT, Chang AK, Duggleby RG. Effect of mutagenesis at serine 653 of Arabidopsis thaliana acetohydroxyacid synthase on the sensitivity to imidazolinone and sulfonylurea herbicides. FEBS Lett. 452: 341-345 (1999).

Leech MJ, Burtin D, Hallard D, Hilliou F, Kemp B, Palacios N, Rocha P, O'Callaghan D, Verpoote R, Christou P. Chapter 4. Particle Gun Methodology as a Tool in Metabolic Engineering. In "Metabolic Engineering of Plant Secondary Metabolism" (Verpoorte R, Alfermann AW, eds), Kluwer Academic Publishers, Dortrecht, The Netherlands, pp. 69-86 (2000).

Lefebvre S, Lawson T, Zakhleniuk OV, Lloyd JC, Raines CA. Increased sedoheptulose-1,7-bisphosphatase activity in transgenic tobacco plants stimulates photosynthesis and growth from an early stage in development. Plant Physiol. 138: 451-460 (2005).

Lefebvre V, North H, Frey A, Sotta B, Seo M, Okamoto M, Nambara E, Marion-Poll A. Functional analysis of Arabidopsis NCED6 and NCED9 genes indicates that ABA synthesized in the endosperm is involved in the induction of seed dormancy. Plant J. 45: 309-319 (2006).

Leferink NG, van Duijn E, Barendregt A, Heck AJ, van Berkel WJ. Galactonolactone dehydrogenase requires a redox-sensitive thiol for optimal production of vitamin C. Plant Physiol. 150: 596-605 (2009).

Legue V, Blancaflor E, Wymer C, Perbal G, Fantin D, Gilroy S. Cytoplasmic free Ca2+ in Arabidopsis roots changes in response to touch but not gravity. Plant Physiol. 114: 789-800 (1997).

Lehfeldt C, Shirley AM, Meyer K, Ruegger MO, Cusumano JC, Viitanen PV, Strack D, Chapple C. Cloning of the SNG1 gene of Arabidopsis reveals a role for a serine carboxypeptidase-like protein as an acyltransferase in secondary metabolism. Plant Cell 12: 1295-1306 (2000).

Lehle FR, Chen F, Wendt KR. Enhancement of NaCl tolerance in Arabidopsis thaliana by exogenous L-asparagine and D-asparagine. Physiol. Plant. 84: 223-228 (1992).

Lehman A, Black R, Ecker JR. HOOKLESS1, an ethylene response gene, is required for differential cell elongation in the Arabidopsis hypocotyl. Cell 85: 183-194 (1996).

Lehmann U, Wienkoop S, Tschoep H, Weckwerth W. If the antibody fails - a mass Western approach. Plant J. 55: 1039-1046 (2008).

Lehti-Shiu MD, Adamczyk BJ, Fernandez DE. Expression of MADS-box genes during the embryonic phase in Arabidopsis. Plant Mol. Biol. 58: 89-107 (2005).

Lehti-Shiu MD, Zou C, Hanada K, Shiu SH. Evolutionary history and stress regulation of plant receptor-like kinase/pelle genes. Plant Physiol. 150: 12-26 (2009).

Leino M, Landgren M, Glimelius K. Alloplasmic effects on mitochondrial transcriptional activity and RNA turnover result in accumulated transcripts of Arabidopsis orfs in cytoplasmic male-sterile Brassica napus. Plant J. 42: 469-480 (2005).

Leitz G, Kang BH, Schoenwaelder ME, Staehelin LA. Statolith sedimentation kinetics and force transduction to the cortical endoplasmic reticulum in gravity-sensing Arabidopsis columella cells. Plant Cell 21: 843-860 (2009).

Leivar P, Gonzalez VM, Castel S, Trelease RN, Lopez-Iglesias C, Arro M, Boronat A, Campos N, Ferrer A, Fernandez-Busquets X. Subcellular localization of Arabidopsis 3-hydroxy-3-methylglutaryl-coenzyme A reductase. Plant Physiol. 137: 57-69 (2005).

Lejay L, Gansel X, Cerezo M, Tillard P, Muller C, Krapp A, Von Wiren N, Daniel-Vedele F, Gojon A. Regulation of root ion transporters by photosynthesis: functional importance and relation with hexokinase. Plant Cell 15: 2218-2232 (2003).

Lejay L, Tillard P, Lepetit M, Olive Fd, Filleur S, Daniel-Vedele F, Gojon A. Molecular and functional regulation of two NO3- uptake systems by N- and C-status of Arabidopsis plants. Plant J. 18: 509-519 (1999).

Lelandais-Briere C, Jovanovic M, Torres GA, Perrin Y, Lemoine R, Corre-Menguy F, Hartmann C. Disruption of AtOCT1, an organic cation transporter gene, affects root development and carnitine-related responses in Arabidopsis. Plant J. 51: 154-164 (2007).

Lemaire SD, Collin V, Keryer E, Quesada A, Miginiac-Maslow M. Characterization of thioredoxin y, a new type of thioredoxin identified in the genome of Chlamydomonas reinhardtii. FEBS Lett. 543: 87-92 (2003).

Lemaitre T, Gaufichon L, Boutet-Mercey S, Christ A, Masclaux-Daubresse C. Enzymatic and metabolic diagnostic of nitrogen deficiency in Arabidopsis thaliana Wassileskija accession. Plant Cell Physiol. 49: 1056-1065 (2008).

Lemaitre T, Urbanczyk-Wochniak E, Flesch V, Bismuth E, Fernie AR, Hodges M. NAD-dependent isocitrate dehydrogenase mutants of Arabidopsis suggest the enzyme is not limiting for nitrogen assimilation. Plant Physiol. 144: 1546-1558 (2007).

Lemmetyinen J, Hassinen M, Elo A, Porali I, Keinonen K, Makela H, Sopanen T. Functional characterization of SEPALLATA3 and AGAMOUS orthologues in silver birch. Physiol. Plant. 121: 149-162 (2004).

Lemoine R, Burkle L, Barker L, Sakr S, Kuhn C, Regnacq M, Gaillard C, Delrot S, Frommer WB. Identification of a pollen-specific sucrose transporter-like protein NtSUT3 from tobacco. FEBS Lett. 454: 325-330 (1999).

Lemoine R, Kuhn C, Thiele N, Delrot S, Frommer WB. Antisense inhibition of the sucrose transporter in potato: Effects on amount and activity. Plant Cell Environ. 19: 1124-1131 (1996).

Leng Q, Mercier RW, Hua BG, Fromm H, Berkowitz GA. Electrophysiological analysis of cloned cyclic nucleotide-gated ion channels. Plant Physiol. 128: 400-410 (2002).

Leng Q, Mercier RW, Yao W, Berkowitz GA. Cloning and first functional characterization of a plant cyclic nucleotide-gated cation channel. Plant Physiol. 121: 753-761 (1999).

Lennon AM, Prommeenate P, Nixon PJ. Location, expression and orientation of the putative chlororespiratory enzymes, Ndh and IMMUTANS, in higher-plant plastids. Planta 218: 254-260 (2003).

LeNoble ME, Spollen WG, Sharp RE. Maintenance of shoot growth by endogenous ABA: genetic assessment of the involvement of ethylene suppression. J. Exp. Bot. 55: 237-245 (2004).

Leon G, Holuigue L, Jordana X. Mitochondrial complex II Is essential for gametophyte development in Arabidopsis. Plant Physiol. 143: 1534-1546 (2007).

Leon J. Peroxisome proliferation in Arabidopsis: the challenging identification of ligand perception and downstream signaling is closer. Plant Signal. Behav. 3: 671-673 (2008).

Leon P, Sheen J. Sugar and hormone connections. Trends Plant Sci. 8: 110-116 (2003).

Leon S, Touraine B, Briat JF, Lobreaux S. Mitochondrial localization of Arabidopsis thaliana Isu Fe-S scaffold proteins. FEBS Lett. 579: 1930-1934 (2005).

Leon-Kloosterziel KM, van de Bunt GA, Zeevaart JA, Koornneef M. Arabidopsis mutants with a reduced seed dormancy. Plant Physiol. 110: 233-240 (1996).

Leon-Kloosterziel KM, Verhagen BW, Keurentjes JJ, Van Pelt JA, Rep M, Van Loon LC, Pieterse CM. Colonization of the Arabidopsis rhizosphere by fluorescent Pseudomonas spp. activates a root-specific, ethylene-responsive PR-5 gene in the vascular bundle. Plant Mol. Biol. 57: 731-748 (2005).

Leon-Reyes A, Spoel SH, De Lange ES, Abe H, Kobayashi M, Tsuda S, Millenaar FF, Welschen RA, Ritsema T, Pieterse CM. Ethylene modulates the role of NONEXPRESSOR OF PATHOGENESIS-RELATED GENES1 in cross talk between salicylate and jasmonate signaling. Plant Physiol. 149: 1797-1809 (2009).

Leonard JM, Bollmann SR, Hays JB. Reduction of stability of Arabidopsis genomic and transgenic DNA-repeat sequences (microsatellites) by inactivation of AtMSH2 mismatch-repair function. Plant Physiol. 133: 328-338 (2003).

Leonard JM, Slabaugh MB, Knapp SJ. Cuphea wrightii thioesterases have unexpected broad specificities on saturated fatty acids. Plant Mol. Biol. 34: 669-679 (1997).

Leonard R, Pabst M, Bondili JS, Chambat G, Veit C, Strasser R, Altmann F. Identification of an Arabidopsis gene encoding a GH95 alpha1,2-fucosidase active on xyloglucan oligo- and polysaccharides. Phytochemistry 69: 1983-1988 (2008).

Leonhardt N, Kwak JM, Robert N, Waner D, Leonhardt G, Schroeder JI. Microarray expression analyses of Arabidopsis guard cells and isolation of a recessive abscisic acid hypersensitive protein phosphatase 2C mutant. Plant Cell 16: 596-615 (2004).

Lepiniec L, Debeaujon I, Routaboul JM, Baudry A, Pourcel L, Nesi N, Caboche M. Genetics and biochemistry of seed flavonoids. Annu. Rev. Plant Biol. 57: 405-430 (2006).

Lepisto A, Kangasjarvi S, Luomala EM, Brader G, Sipari N, Keranen M, Keinanen M, Rintamaki E. Chloroplast NADPH-thioredoxin reductase interacts with photoperiodic development in Arabidopsis. Plant Physiol. 149: 1261-1276 (2009).

Leprince O, Satour P, Vu BL, Buitink J. The role of sugars and hexose phosphorylation in regulating the re-establishment of desiccation tolerance in germinated radicles of Cucumis sativa and Medicago truncatula. Physiol. Plant. 122: 200-209 (2004).

Lermontova I, Grimm B. Overexpression of plastidic protoporphyrinogen IX oxidase leads to resistance to the diphenyl-ether herbicide acifluorfen. Plant Physiol. 122: 75-84 (2000).

Lermontova I, Schubert V, Fuchs J, Klatte S, Macas J, Schubert I. Loading of Arabidopsis centromeric histone CENH3 occurs mainly during G2 and requires the presence of the histone fold domain. Plant Cell 18: 2443-2451 (2006).

Lerouxel O, Choo TS, Seveno M, Usadel B, Faye L, Lerouge P, Pauly M. Rapid structural phenotyping of plant cell wall mutants by enzymatic oligosaccharide fingerprinting. Plant Physiol. 130: 1754-1763 (2002).

Lerouxel O, Mouille G, Andeme-Onzighi C, Bruyant MP, Seveno M, Loutelier-Bourhis C, Driouich A, Hofte H, Lerouge P. Mutants in DEFECTIVE GLYCOSYLATION, an Arabidopsis homolog of an oligosaccharyltransferase complex subunit, show protein underglycosylation and defects in cell differentiation and growth. Plant J. 42: 455-468 (2005).

Lertpiriyapong K, Sung ZR. The elongation defective1 mutant of Arabidopsis is impaired in the gene encoding a serine-rich secreted protein. Plant Mol. Biol. 53: 581-595 (2003).

Leseberg CH, Eissler CL, Wang X, Johns MA, Duvall MR, Mao L. Interaction study of MADS-domain proteins in tomato. J. Exp. Bot. 59: 2253-2265 (2008).

Leshem Y, Melamed-Book N, Cagnac O, Ronen G, Nishri Y, Solomon M, Cohen G, Levine A. Suppression of Arabidopsis vesicle-SNARE expression inhibited fusion of H2O2-containing vesicles with tonoplast and increased salt tolerance. Proc. Natl. Acad. Sci. U.S.A. 103: 18008-18013 (2006).

Leu WM, Cao XL, Wilson TJ, Snustad DP, Chua NH. Phytochrome A and phytochrome B mediate the hypocotyl-specific downregulation of TUB1 by light in Arabidopsis. Plant Cell 7: 2187-2196 (1995).

Leube MP, Grill E, Amrhein N. ABI1 of Arabidopsis is a protein serine/threonine phosphatase highly regulated by the proton and magnesium ion concentration. FEBS Lett. 424: 100-104 (1998).

Leung J, Bouvier-Durand M, Morris PC, Guerrier D, Chefdor F, Giraudat J. Arabidopsis ABA response gene ABI1: features of a calcium-modulated protein phosphatase. Science 264: 1448-1452 (1994).

Leung J, Merlot S, Giraudat J. The Arabidopsis ABSCISIC ACID-INSENSITIVE2 (ABI2) and ABI1 genes encode homologous protein phosphatases 2C involved in abscisic acid signal transduction. Plant Cell 9: 759-771 (1997).

Leung KC, Li HY, Xiao S, Tse MH, Chye ML. Arabidopsis ACBP3 is an extracellularly targeted acyl-CoA-binding protein. Planta 223: 871-881 (2006).

Leustek T, Murillo M, Cervantes M. Cloning of a cDNA encoding ATP sulfurylase from Arabidopsis thaliana by functional expression in Saccharomyces cerevisiae. Plant Physiol. 105: 897-902 (1994).

Leustek T, Saito K. Sulfate transport and assimilation in plants. Plant Physiol. 120: 637-644 (1999).

Leustek T, Smith M, Murillo M, Singh DP, Smith AG, Woodcock SC, Awan SJ, Warren MJ. Siroheme biosynthesis in higher plants. Analysis of an S-adenosyl-L-methionine-dependent uroporphyrinogen III methyltransferase from Arabidopsis thaliana. J. Biol. Chem. 272: 2744-2752 (1997).

Levin JZ, de Framond AJ, Tuttle A, Bauer MW, Heifetz PB. Methods of double-stranded RNA-mediated gene inactivation in Arabidopsis and their use to define an essential gene in methionine biosynthesis. Plant Mol. Biol. 44: 759-775 (2000).

Levin M, Lemcoff JH, Cohen S, Kapulnik Y. Low air humidity increases leaf-specific hydraulic conductance of Arabidopsis thaliana (L.) Heynh (Brassicaceae). J. Exp. Bot. 58: 3711-3718 (2007).

Levitin B, Richter D, Markovich I, Zik M. Arabinogalactan proteins 6 and 11 are required for stamen and pollen function in Arabidopsis. Plant J. 56: 351-363 (2008).

Levy A, Erlanger M, Rosenthal M, Epel BL. A plasmodesmata-associated beta-1,3-glucanase in Arabidopsis. Plant J. 49: 669-682 (2007).

Levy M, Bachmair A, Adam Z. A single recessive mutation in the proteolytic machinery of Arabidopsis chloroplasts impairs photoprotection and photosynthesis upon cold stress. Planta 218: 396-405 (2004).

Levy M, Wang Q, Kaspi R, Parrella MP, Abel S. Arabidopsis IQD1, a novel calmodulin-binding nuclear protein, stimulates glucosinolate accumulation and plant defense. Plant J. 43: 79-96 (2005).

Levy-Rimler G, Bell RE, Ben-Tal N, Azem A. Type I chaperonins: not all are created equal. FEBS Lett. 529: 1-5 (2002).

Lew RR. Pressure regulation of the electrical properties of growing Arabidopsis thaliana L. root hairs. Plant Physiol. 112: 1089-1100 (1996).

Lew RR. Osmotic effects on the electrical properties of Arabidopsis root hair vacuoles in situ. Plant Physiol. 134: 352-360 (2004).

Lewandowska D, Simpson CG, Clark GP, Jennings NS, Barciszewska-Pacak M, Lin CF, Makalowski W, Brown JW, Jarmolowski A. Determinants of plant U12-dependent intron splicing efficiency. Plant Cell 16: 1340-1352 (2004).

Lewis BD, Karlin-Neumann G, Davis RW, Spalding EP. Ca(2+)-activated anion channels and membrane depolarizations induced by blue light and cold in Arabidopsis seedlings. Plant Physiol. 114: 1327-1334 (1997).

Lewis BD, Spalding EP. Nonselective block by La3+ of Arabidopsis ion channels involved in signal transduction. J. Membr. Biol. 162: 81-90 (1998).

Lewis DR, Miller ND, Splitt BL, Wu G, Spalding EP. Separating the roles of acropetal and basipetal auxin transport on gravitropism with mutations in two Arabidopsis multidrug resistance-like ABC transporter genes. Plant Cell 19: 1838-1850 (2007).

Lewis JM, Mackintosh CA, Shin S, Gilding E, Kravchenko S, Baldridge G, Zeyen R, Muehlbauer GJ. Overexpression of the maize Teosinte Branched1 gene in wheat suppresses tiller development. Plant Cell Rep. 27: 1217-1225 (2008).

Lewis MW, Leslie ME, Liljegren SJ. Plant separation: 50 ways to leave your mother. Curr. Opin. Plant Biol. 9: 59-65 (2006).

Lewsey M, Robertson FC, Canto T, Palukaitis P, Carr JP. Selective targeting of miRNA-regulated plant development by a viral counter-silencing protein. Plant J. 50: 240-252 (2007).

Lexer C, Fay MF. Adaptation to environmental stress: a rare or frequent driver of speciation? J. Evol. Biol. 18: 893-900 (2005).

Leymarie J, Damerval C, Marcotte L, Combes V, Vartanian N. Two-dimensional protein patterns of Arabidopsis wild-type and auxin insensitive mutants, axr1, axr2, reveal interactions between drought and hormonal responses. Plant Cell Physiol. 37: 966-975 (1996).

Leyser HM, Pickett FB, Dharmasiri S, Estelle M. Mutations in the AXR3 gene of Arabidopsis result in altered auxin response including ectopic expression from the SAUR-AC1 promoter. Plant J. 10: 403-413 (1996).

Lezhneva L, Amann K, Meurer J. The universally conserved HCF101 protein is involved in assembly of [4Fe-4S]-cluster-containing complexes in Arabidopsis thaliana chloroplasts. Plant J. 37: 174-185 (2004).

Lezhneva L, Meurer J. The nuclear factor HCF145 affects chloroplast psaA-psaB-rps14 transcript abundance in Arabidopsis thaliana. Plant J. 38: 740-753 (2004).

Li A, Schuermann D, Gallego F, Kovalchuk I, Tinland B. Repair of damaged DNA by Arabidopsis cell extract. Plant Cell 14: 263-273 (2002).

Li AL, Zhu YF, Tan XM, Wang X, Wei B, Guo HZ, Zhang ZL, Chen XB, Zhao GY, Kong XY, Jia JZ, Mao L. Evolutionary and functional study of the CDPK gene family in wheat (Triticum aestivum L.). Plant Mol. Biol. 66: 429-443 (2008).

Li C, Dubcovsky J. Wheat FT protein regulates VRN1 transcription through interactions with FDL2. Plant J. 55: 543-554 (2008).

Li CH, Yu N, Jiang SM, Shangguan XX, Wang LJ, Chen XY. Down-regulation of S-adenosyl-L-homocysteine hydrolase reveals a role of cytokinin in promoting transmethylation reactions. Planta 228: 125-136 (2008).

Li D, Liu H, Zhang H, Wang X, Song F. OsBIRH1, a DEAD-box RNA helicase with functions in modulating defence responses against pathogen infection and oxidative stress. J. Exp. Bot. 59: 2133-2146 (2008).

Li F, Asami T, Wu X, Tsang EW, Cutler AJ. A putative hydroxysteroid dehydrogenase involved in regulating plant growth and development. Plant Physiol. 145: 87-97 (2007).

Li F, Wu X, Lam P, Bird D, Zheng H, Samuels L, Jetter R, Kunst L. Identification of the wax ester synthase/acyl-CoA:diacylglycerol acyltransferase WSD1 required for stem wax ester biosynthesis in Arabidopsis thaliana. Plant Physiol. 148: 97-107 (2008).

Li F, Wu X, Tsang E, Cutler AJ. Transcriptional profiling of imbibed Brassica napus seed. Genomics 86: 718-730 (2005).

Li G, Lin F, Xue HW. Genome-wide analysis of the phospholipase D family in Oryza sativa and functional characterization of PLDbeta1 in seed germination. Cell Res. 17: 881-894 (2007).

Li G, Xue HW. Arabidopsis PLDzeta2 regulates vesicle trafficking and is required for auxin response. Plant Cell 19: 281-295 (2007).

Li H, Cheng Y, Murphy A, Hagen G, Guilfoyle TJ. Constitutive repression and activation of auxin signaling in Arabidopsis. Plant Physiol. 149: 1277-1288 (2009).

Li H, Culligan K, Dixon RA, Chory J. CUE1: a mesophyll cell-specific positive regulator of light-controlled gene expression in Arabidopsis. Plant Cell 7: 1599-1610 (1995).

Li H, Lin Y, Heath RM, Zhu MX, Yang Z. Control of pollen tube tip growth by a Rop GTPase-dependent pathway that leads to tip-localized calcium influx. Plant Cell 11: 1731-1742 (1999).

Li H, Sun J, Xu Y, Jiang H, Wu X, Li C. The bHLH-type transcription factor AtAIB positively regulates ABA response in Arabidopsis. Plant Mol. Biol. 65: 655-665 (2007).

Li H, Wu G, Ware D, Davis KR, Yang Z. Arabidopsis Rho-related GTPases: differential gene expression in pollen and polar localization in fission yeast. Plant Physiol. 118: 407-417 (1998).

Li H, Xu L, Wang H, Yuan Z, Cao X, Yang Z, Zhang D, Xu Y, Huang H. The putative RNA-dependent RNA polymerase RDR6 acts synergistically with ASYMMETRIC LEAVES1 and 2 to repress BREVIPEDICELLUS and MicroRNA165/166 in Arabidopsis leaf development. Plant Cell 17: 2157-2171 (2005).

Li H, Zeng X, Liu ZQ, Meng QT, Yuan M, Mao TL. Arabidopsis microtubule-associated protein AtMAP65-2 acts as a microtubule stabilizer. Plant Mol. Biol. 69: 313-324 (2009).

Li H, Zhou SY, Zhao WS, Su SC, Peng YL. A novel wall-associated receptor-like protein kinase gene, OsWAK1, plays important roles in rice blast disease resistance. Plant Mol. Biol. 69: 337-346 (2009).

Li HC, Chuang K, Henderson JT, Rider SD Jr, Bai Y, Zhang H, Fountain M, Gerber J, Ogas J. PICKLE acts during germination to repress expression of embryonic traits. Plant J. 44: 1010-1022 (2005).

Li HY, Chye ML. Arabidopsis acyl-CoA-binding protein ACBP2 interacts with an ethylene-responsive element-binding protein, AtEBP, via its ankyrin repeats. Plant Mol. Biol. 54: 233-243 (2004).

Li HY, Xiao S, Chye ML. Ethylene- and pathogen-inducible Arabidopsis acyl-CoA-binding protein 4 interacts with an ethylene-responsive element binding protein. J. Exp. Bot. 59: 3997-4006 (2008).

Li J, Brader G, Kariola T, Palva ET. WRKY70 modulates the selection of signaling pathways in plant defense. Plant J. 46: 477-491 (2006).

Li J, Chen X. PAUSED, a putative exportin-t, acts pleiotropically in Arabidopsis development but is dispensable for viability. Plant Physiol. 132: 1913-1924 (2003).

Li J, Chory J. A putative leucine-rich repeat receptor kinase involved in brassinosteroid signal transduction. Cell 90: 929-938 (1997).

Li J, Dai X, Zhao Y. A role for auxin response factor 19 in auxin and ethylene signaling in Arabidopsis. Plant Physiol. 140: 899-908 (2006).

Li J, Hansen BG, Ober JA, Kliebenstein DJ, Halkier BA. A subclade of flavin-monooxygenases involved in aliphatic glucosinolate biosynthesis. Plant Physiol. 148: 1721-1733 (2008).

Li J, Last RL. The Arabidopsis thaliana trp5 mutant has a feedback-resistant anthranilate synthase and elevated soluble tryptophan. Plant Physiol. 110: 51-59 (1996).

Li J, Lease KA, Tax FE, Walker JC. BRS1, a serine carboxypeptidase, regulates BRI1 signaling in Arabidopsis thaliana. Proc. Natl. Acad. Sci. U.S.A. 98: 5916-5921 (2001).

Li J, Li X, Guo L, Lu F, Feng X, He K, Wei L, Chen Z, Qu LJ, Gu H. A subgroup of MYB transcription factor genes undergoes highly conserved alternative splicing in Arabidopsis and rice. J. Exp. Bot. 57: 1263-1273 (2006).

Li J, Mo X, Wang J, Chen N, Fan H, Dai C, Wu P. BREVIS RADIX is involved in cytokinin-mediated inhibition of lateral root initiation in Arabidopsis. Planta 229: 593-603 (2009).

Li J, Nam KH, Vafeados D, Chory J. bin2, a new brassinosteroid-insensitive locus in Arabidopsis. Plant Physiol. 127: 14-22 (2001).

Li J, Ou-Lee TM, Raba R, Amundson RG, Last RL. Arabidopsis flavonoid mutants are hypersensitive to UV-B irradiation. Plant Cell 5: 171-179 (1993).

Li J, Webster M, Dudas B, Cook H, Manfield I, Davies B, Gilmartin PM. The S locus-linked Primula homeotic mutant sepaloid shows characteristics of a B-function mutant but does not result from mutation in a B-function gene. Plant J. 56: 1-12 (2008).

Li J, Webster M, Furuya M, Gilmartin PM. Identification and characterization of pin and thrum alleles of two genes that co-segregate with the Primula S locus. Plant J. 51: 18-31 (2007).

Li J, Yang H, Peer WA, Richter G, Blakeslee J, Bandyopadhyay A, Titapiwantakun B, Undurraga S, Khodakovskaya M, Richards EL, Krizek B, Murphy AS, Gilroy S, Gaxiola R. Arabidopsis H+-PPase AVP1 regulates auxin-mediated organ development. Science 310: 121-125 (2005).

Li J, Zhao J, Rose AB, Schmidt R, Last RL. Arabidopsis phosphoribosylanthranilate isomerase: molecular genetic analysis of triplicate tryptophan pathway genes. Plant Cell 7: 447-461 (1995).

Li JF, Nebenfuhr A. Inter-dependence of dimerization and organelle binding in myosin XI. Plant J. 55: 478-490 (2008).

Li JH, Liu YQ, Lu P, Lin HF, Bai Y, Wang XC, Chen YL. A signaling pathway linking nitric oxide production to heterotrimeric G protein and hydrogen peroxide regulates extracellular calmodulin induction of stomatal closure in Arabidopsis. Plant Physiol. 150: 114-124 (2009).

Li L, Cheng H, Gai J, Yu D. Genome-wide identification and characterization of putative cytochrome P450 genes in the model legume Medicago truncatula. Planta 226: 109-123 (2007).

Li L, Dion E, Richard G, Domingue O, Jean M, Belzile FJ. The Arabidopsis DNA mismatch repair gene PMS1 restricts somatic recombination between homeologous sequences. Plant Mol. Biol. 69: 675-684 (2009).

Li L, Foster CM, Gan Q, Nettleton D, James MG, Myers AM, Wurtele ES. Identification of the novel protein QQS as a component of the starch metabolic network in Arabidopsis leaves. Plant J. 58: 485-498 (2009).

Li L, Hou X, Tsuge T, Ding M, Aoyama T, Oka A, Gu H, Zhao Y, Qu LJ. The possible action mechanisms of indole-3-acetic acid methyl ester in Arabidopsis. Plant Cell Rep. 27: 575-584 (2008).

Li L, Ilarslan H, James MG, Myers AM, Wurtele ES. Genome wide co-expression among the starch debranching enzyme genes AtISA1, AtISA2, and AtISA3 in Arabidopsis thaliana. J. Exp. Bot. 58: 3323-3342 (2007).

Li L, Jean M, Belzile F. The impact of sequence divergence and DNA mismatch repair on homeologous recombination in Arabidopsis. Plant J. 45: 908-916 (2006).

Li L, Kim BG, Cheong YH, Pandey GK, Luan S. A Ca2+ signaling pathway regulates a K+ channel for low-K response in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A. 103: 12625-12630 (2006).

Li L, Santerre-Ayotte S, Boivin EB, Jean M, Belzile F. A novel reporter for intrachromosomal homoeologous recombination in Arabidopsis thaliana. Plant J. 40: 1007-1015 (2004).

Li L, Tutone AF, Drummond RS, Gardner RC, Luan S. A novel family of magnesium transport genes in Arabidopsis. Plant Cell 13: 2761-2775 (2001).

Li L, Xu J, Xu ZH, Xue HW. Brassinosteroids stimulate plant tropisms through modulation of polar auxin transport in Brassica and Arabidopsis. Plant Cell 17: 2738-2753 (2005).

Li L, Zhao Y, McCaig BC, Wingerd BA, Wang J, Whalon ME, Pichersky E, Howe GA. The tomato homolog of CORONATINE-INSENSITIVE1 is required for the maternal control of seed maturation, jasmonate-signaled defense responses, and glandular trichome development. Plant Cell 16: 126-143 (2004).

Li M, Qin C, Welti R, Wang X. Double knockouts of phospholipase D{zeta}1 and {zeta}2 in Arabidopsis affect root elongation during phosphate-limited growth, but do not affect root hair patterning. Plant Physiol. 140: 761-770 (2006).

Li M, Welti R, Wang X. Quantitative profiling of Arabidopsis polar glycerolipids in response to phosphorus starvation. Roles of phospholipases D zeta1 and D zeta2 in phosphatidylcholine hydrolysis and digalactosyldiacylglycerol accumulation in phosphorus-starved plants. Plant Physiol. 142: 750-761 (2006).

Li M, Xu W, Yang W, Kong Z, Xue Y. Genome-wide gene expression profiling reveals conserved and novel molecular functions of the stigma in rice. Plant Physiol. 144: 1797-1812 (2007).

Li P, Ainsworth EA, Leakey AD, Ulanov A, Dicke M, Lozovaya V, Ort DR, Bohnert HJ. Arabidopsis transcript and metabolite profiles: ecotype-specific responses to open-air elevated [CO2]. Plant Cell Environ. 31: 1673-1687 (2008).

Li P, Mane SP, Sioson AA, Robinet CV, Heath LS, Bohnert HJ, Grene R. Effects of chronic ozone exposure on gene expression in Arabidopsis thaliana ecotypes and in Thellungiella halophila. Plant Cell Environ. 29: 854-868 (2006).

Li P, Sioson A, Mane SP, Ulanov A, Grothaus G, Heath LS, Murali TM, Bohnert HJ, Grene R. Response diversity of Arabidopsis thaliana ecotypes in elevated [CO(2)] in the field. Plant Mol. Biol. 62: 593-609 (2006).

Li R, Moore M, King J. Investigating the regulation of one-carbon metabolism in Arabidopsis thaliana. Plant Cell Physiol. 44: 233-241 (2003).

Li RJ, Hua W, Lu YT. Arabidopsis cytosolic glutamine synthetase AtGLN1;1 is a potential substrate of AtCRK3 involved in leaf senescence. Biochem. Biophys. Res. Commun. 342: 119-126 (2006).

Li RZ, Jia XY, Mao X. Ethanol-inducible gene expression system and its applications in plant functional genomics. Plant Sci. 169: 463-469 (2005).

Li S, Blanchoin L, Yang Z, Lord EM. The putative Arabidopsis arp2/3 complex controls leaf cell morphogenesis. Plant Physiol. 132: 2034-2044 (2003).

Li S, Ehrhardt DW, Rhee SY. Systematic analysis of Arabidopsis organelles and a protein localization database for facilitating fluorescent tagging of full-length Arabidopsis proteins. Plant Physiol. 141: 527-539 (2006).

Li S, Fu Q, Huang W, Yu D. Functional analysis of an Arabidopsis transcription factor WRKY25 in heat stress. Plant Cell Rep. 28: 683-693 (2009).

Li S, Lauri A, Ziemann M, Busch A, Bhave M, Zachgo S. Nuclear activity of ROXY1, a glutaredoxin interacting with TGA factors, is required for petal development in Arabidopsis thaliana. Plant Cell 21: 429-441 (2009).

Li SF, Iacuone S, Parish RW. Suppression and restoration of male fertility using a transcription factor. Plant Biotechnol. J. 5: 297-312 (2007).

Li SF, Milliken ON, Pham H, Seyit R, Napoli R, Preston J, Koltunow AM, Parish RW. The Arabidopsis MYB5 transcription factor regulates mucilage synthesis, seed coat development, and trichome morphogenesis. Plant Cell 21: 72-89 (2009).

Li SS, Wang Y, Bjorn LO. Effects of temperature on UV-B-induced DNA damage and photorepair in Arabidopsis thaliana. J. Environ. Sci. (China) 16: 173-176 (2004).

Li W, Chen C, Markmann-Mulisch U, Timofejeva L, Schmelzer E, Ma H, Reiss B. The Arabidopsis AtRAD51 gene is dispensable for vegetative development but required for meiosis. Proc. Natl. Acad. Sci. U.S.A. 101: 10596-10601 (2004).

Li W, Wang R, Li M, Li L, Wang C, Welti R, Wang X. Differential degradation of extraplastidic and plastidic lipids during freezing and post-freezing recovery in Arabidopsis thaliana. J. Biol. Chem. 283: 461-468 (2008).

Li W, Wang Y, Okamoto M, Crawford NM, Siddiqi MY, Glass AD. Dissection of the AtNRT2.1:AtNRT2.2 inducible high-affinity nitrate transporter gene cluster. Plant Physiol. 143: 425-433 (2007).

Li W, Yang X, Lin Z, Timofejeva L, Xiao R, Makaroff CA, Ma H. The AtRAD51C gene is required for normal meiotic chromosome synapsis and double-stranded break repair in Arabidopsis. Plant Physiol. 138: 965-976 (2005).

Li WX, Oono Y, Zhu J, Zhu J, He XJ, Wu JM, Iida K, Lu XY, Cui X, Jin H, Zhu JK. The Arabidopsis NFYA5 transcription factor is regulated transcriptionally and posttranscriptionally to promote drought resistance. Plant Cell 20: 2238-2251 (2008).

Li WZ, Chinnappa CC. Isolation and characterization of PHYC gene from Stellaria longipes: differential expression regulated by different red/far-red light ratios and photoperiods. Planta 220: 318-330 (2004).

Li X, Chanroj S, Wu Z, Romanowsky SM, Harper JF, Sze H. A distinct endosomal Ca2+/Mn2+ pump affects root growth through the secretory process. Plant Physiol. 147: 1675-1689 (2008).

Li X, Cordero I, Caplan J, Molhoj M, Reiter WD. Molecular analysis of 10 coding regions from Arabidopsis that are homologous to the MUR3 xyloglucan galactosyltransferase. Plant Physiol. 134: 940-950 (2004).

Li X, Duan X, Jiang H, Sun Y, Tang Y, Yuan Z, Guo J, Liang W, Chen L, Yin J, Ma H, Wang J, Zhang D. Genome-wide analysis of basic/helix-loop-helix transcription factor family in rice and Arabidopsis. Plant Physiol. 141: 1167-1184 (2006).

Li X, Volrath SL, Nicholl DB, Chilcott CE, Johnson MA, Ward ER, Law MD. Development of protoporphyrinogen oxidase as an efficient selection marker for Agrobacterium tumefaciens-mediated transformation of maize. Plant Physiol. 133: 736-747 (2003).

Li Y, Beisson F, Koo AJ, Molina I, Pollard M, Ohlrogge J. Identification of acyltransferases required for cutin biosynthesis and production of cutin with suberin-like monomers. Proc. Natl. Acad. Sci. U.S.A. 104: 18339-18344 (2007).

Li Y, Beisson F, Ohlrogge J, Pollard M. Monoacylglycerols are components of root waxes and can be produced in the aerial cuticle by ectopic expression of a suberin-associated acyltransferase. Plant Physiol. 144: 1267-1277 (2007).

Li Y, Beisson F, Pollard M, Ohlrogge J. Oil content of Arabidopsis seeds: the influence of seed anatomy, light and plant-to-plant variation. Phytochemistry 67: 904-915 (2006).

Li Y, Dankher OP, Carreira L, Smith AP, Meagher RB. The shoot-specific expression of gamma-glutamylcysteine synthetase directs the long-distance transport of thiol-peptides to roots conferring tolerance to mercury and arsenic. Plant Physiol. 141: 288-298 (2006).

Li Y, Darley CP, Ongaro V, Fleming A, Schipper O, Baldauf SL, McQueen-Mason SJ. Plant expansins are a complex multigene family with an ancient evolutionary origin. Plant Physiol. 128: 854-864 (2002).

Li Y, Dhankher OP, Carreira L, Lee D, Chen A, Schroeder JI, Balish RS, Meagher RB. Overexpression of phytochelatin synthase in Arabidopsis leads to enhanced arsenic tolerance and cadmium hypersensitivity. Plant Cell Physiol. 45: 1787-1797 (2004).

Li Y, Jones L, McQueen-Mason S. Expansins and cell growth. Curr. Opin. Plant Biol. 6: 603-610 (2003).

Li Y, Sorefan K, Hemmann G, Bevan MW. Arabidopsis NAP and PIR regulate actin-based cell morphogenesis and multiple developmental processes. Plant Physiol. 136: 3616-3627 (2004).

Li Y, Wu Z, Ma N, Gao J. Regulation of the rose Rh-PIP2;1 promoter by hormones and abiotic stresses in Arabidopsis. Plant Cell Rep. 28: 185-196 (2009).

Li Z, Li G, Bai N, Lu L, Zhang S. Isolation of HAG1 and its regulation by plant hormones during in vitro floral organogenesis in Hyacinthus orientalis L. Planta 215: 533-540 (2002).

Li Z, Mouille G, Kosar-Hashemi B, Rahman S, Clarke B, Gale KR, Appels R, Morell MK. The structure and expression of the wheat starch synthase III gene. Motifs in the expressed gene define the lineage of the starch synthase III gene family. Plant Physiol. 123: 613-624 (2000).

Li Z, Xing A, Moon BP, Burgoyne SA, Guida AD, Liang H, Lee C, Caster CS, Barton JE, Klein TM, Falco SC. A Cre/loxP-mediated self-activating gene excision system to produce marker gene free transgenic soybean plants. Plant Mol. Biol. 65: 329-341 (2007).

Liang BM, Dennings AM, Sharp RE, Baskin TI. Consistent handedness of microtubule helical arrays in maize and Arabidopsis primary roots. Protoplasma 190: 8-15 (1996).

Liang F, Sze H. A high-affinity Ca2+ pump, ECA1, from the endoplasmic reticulum is inhibited by cyclopiazonic acid but not by thapsigargin. Plant Physiol. 118: 817-825 (1998).

Liang L, Flury S, Kalck V, Hohn B, Molinier J. CENTRIN2 interacts with the Arabidopsis homolog of the human XPC protein (AtRAD4) and contributes to efficient synthesis-dependent repair of bulky DNA lesions. Plant Mol. Biol. 61: 345-356 (2006).

Liang M, Davis E, Gardner D, Cai X, Wu Y. Involvement of AtLAC15 in lignin synthesis in seeds and in root elongation of Arabidopsis. Planta 224: 1185-1196 (2006).

Liang X, Abel S, Keller JA, Shen NF, Theologis A. The 1-aminocyclopropane-1-carboxylate synthase gene family of Arabidopsis thaliana. Proc. Natl. Acad. Sci. U.S.A. 89: 11046-11050 (1992).

Liang X, Shen NF, Theologis A. Li(+)-regulated 1-aminocyclopropane-1-carboxylate synthase gene expression in Arabidopsis thaliana. Plant J. 10: 1027-1036 (1996).

Liang YK, Wang Y, Zhang Y, Li SG, Lu XC, Li H, Zou C, Xu ZH, Bai SN. OsSET1, a novel SET-domain-containing gene from rice. J. Exp. Bot. 54: 1995-1996 (2003).

Liao Y, Zhou X, Yu J, Cao Y, Li X, Kuai B. The key role of chlorocatechol 1,2-dioxygenase in phytoremoval and degradation of catechol by transgenic Arabidopsis. Plant Physiol. 142: 620-628 (2006).

Libault M, Tessadori F, Germann S, Snijder B, Fransz P, Gaudin V. The Arabidopsis LHP1 protein is a component of euchromatin. Planta 222: 910-925 (2005).

Libourel IG, Bethke PC, De Michele R, Jones RL. Nitric oxide gas stimulates germination of dormant Arabidopsis seeds: use of a flow-through apparatus for delivery of nitric oxide. Planta 223: 813-820 (2006).

Lid SE, Olsen L, Nestestog R, Aukerman M, Brown RC, Lemmon B, Mucha M, Opsahl-Sorteberg HG, Olsen OA. Mutation in the Arabidopisis thaliana DEK1 calpain gene perturbs endosperm and embryo development while over-expression affects organ development globally. Planta 221: 339-351 (2005).

Lidder P, Gutierrez RA, Salome PA, McClung CR, Green PJ. Circadian control of messenger RNA stability. Association with a sequence-specific messenger RNA decay pathway. Plant Physiol. 138: 2374-2385 (2005).

Lieman-Hurwitz J, Rachmilevitch S, Mittler R, Marcus Y, Kaplan A. Enhanced photosynthesis and growth of transgenic plants that express ictB , a gene involved in HCO3- accumulation in cyanobacteria. Plant Biotechnology Journal 1: 43-50 (2003).

Liepman AH, Nairn CJ, Willats WG, Sřrensen I, Roberts AW, Keegstra K. Functional genomic analysis supports conservation of function among cellulose synthase-like a gene family members and suggests diverse roles of mannans in plants. Plant Physiol. 143: 1881-1893 (2007).

Liepman AH, Olsen LI. Genomic analysis of aminotransferases in Arabidopsis thaliana. Crit. Rev. Plant Sci. 23: 73-89 (2004).

Liepman AH, Olsen LJ. Peroxisomal alanine:glyoxylate aminotransferase (AGT1) is a photorespiratory enzyme with multiple substrates in Arabidopsis thaliana. Plant J. 25: 487-498 (2001).

Liepman AH, Olsen LJ. Alanine aminotransferase homologs catalyze the glutamate:glyoxylate aminotransferase reaction in peroxisomes of Arabidopsis. Plant Physiol. 131: 215-227 (2003).

Lifschitz E, Eshed Y. Universal florigenic signals triggered by FT homologues regulate growth and flowering cycles in perennial day-neutral tomato. J. Exp. Bot. 57: 3405-3414 (2006).

Lifschitz E, Eviatar T, Rozman A, Shalit A, Goldshmidt A, Amsellem Z, Alvarez JP, Eshed Y. The tomato FT ortholog triggers systemic signals that regulate growth and flowering and substitute for diverse environmental stimuli. Proc. Natl. Acad. Sci. U.S.A. 103: 6398-6403 (2006).

Liljegren SJ, Gustafson-Brown C, Pinyopich A, Ditta GS, Yanofsky MF. Interactions among APETALA1, LEAFY, and TERMINAL FLOWER1 specify meristem fate. Plant Cell 11: 1007-1018 (1999).

Lillo C, Lea US, Ruoff P. Nutrient depletion as a key factor for manipulating gene expression and product formation in different branches of the flavonoid pathway. Plant Cell Environ. 31: 587-601 (2008).

Lillo C, Meyer C, Lea US, Provan F, Oltedal S. Mechanism and importance of post-translational regulation of nitrate reductase. J. Exp. Bot. 55: 1275-1282 (2004).

Lillo C, Meyer C, Ruoff P. The nitrate reductase circadian system. The central clock dogma contra multiple oscillatory feedback loops. Plant Physiol. 125: 1554-1557 (2001).

Lim CJ, Hwang JE, Chen H, Hong JK, Yang KA, Choi MS, Lee KO, Chung WS, Lee SY, Lim CO. Over-expression of the Arabidopsis DRE/CRT-binding transcription factor DREB2C enhances thermotolerance. Biochem. Biophys. Res. Commun. 362: 431-436 (2007).

Lim EK, Jackson RG, Bowles DJ. Identification and characterisation of Arabidopsis glycosyltransferases capable of glucosylating coniferyl aldehyde and sinapyl aldehyde. FEBS Lett. 579: 2802-2806 (2005).

Lim EK, Li Y, Parr A, Jackson R, Ashford DA, Bowles DJ. Identification of glucosyltransferase genes involved in sinapate metabolism and lignin synthesis in Arabidopsis. J. Biol. Chem. 276: 4344-4349 (2001).

Lim J, Jung JW, Lim CE, Lee MH, Kim BJ, Kim M, Bruce WB, Benfey PN. Conservation and diversification of SCARECROW in maize. Plant Mol. Biol. 59: 619-630 (2005).

Lim MH, Kim J, Kim YS, Chung KS, Seo YH, Lee I, Kim J, Hong CB, Kim HJ, Park CM. A new Arabidopsis gene, FLK, encodes an RNA binding protein with K homology motifs and regulates flowering time via FLOWERING LOCUS C. Plant Cell 16: 731-740 (2004).

Lim MT, Kunkel BN. The Pseudomonas syringae type III effector AvrRpt2 promotes virulence independently of RIN4, a predicted virulence target in Arabidopsis thaliana. Plant J. 40: 790-798 (2004).

Lim PO, Kim Y, Breeze E, Koo JC, Woo HR, Ryu JS, Park DH, Beynon J, Tabrett A, Buchanan-Wollaston V, Nam HG. Overexpression of a chromatin architecture-controlling AT-hook protein extends leaf longevity and increases the post-harvest storage life of plants. Plant J. 52: 1140-1153 (2007).

Lim PO, Woo HR, Nam HG. Molecular genetics of leaf senescence in Arabidopsis. Trends Plant Sci. 8: 272-278 (2003).

Lim TS, Chitra TR, Han P, Pua EC, Yu H. Cloning and characterization of Arabidopsis and Brassica juncea flavin-containing amine oxidases. J. Exp. Bot. 57: 4155-4169 (2006).

Limpens E, Ramos J, Franken C, Raz V, Compaan B, Franssen H, Bisseling T, Geurts R. RNA interference in Agrobacterium rhizogenes-transformed roots of Arabidopsis and Medicago truncatula. J. Exp. Bot. 55: 983-992 (2004).

Lin X et al. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Nature 402: 761-768 (1999).

Lin C, Shalitin D. Cryptochrome structure and signal transduction. Annu. Rev. Plant Biol. 54: 469-496 (2003).

Lin CC, Kao CH. Regulation of ammonium-induced proline accumulation in detached rice leaves. Plant Growth Regul. 35: 69-74 (2001).

Lin CM, Koh S, Stacey G, Yu SM, Lin TY, Tsay YF. Cloning and functional characterization of a constitutively expressed nitrate transporter gene, OsNRT1, from rice. Plant Physiol. 122: 379-388 (2000).

Lin JF, Wu SH. Molecular events in senescing Arabidopsis leaves. Plant J. 39: 612-628 (2004).

Lin LJ, Tai SS, Peng CC, Tzen JT. Steroleosin, a sterol-binding dehydrogenase in seed oil bodies. Plant Physiol. 128: 1200-1211 (2002).

Lin M, Behal R, Oliver DJ. Disruption of plE2, the gene for the E2 subunit of the plastid pyruvate dehydrogenase complex, in Arabidopsis causes an early embryo lethal phenotype. Plant Mol. Biol. 52: 865-872 (2003).

Lin M, Oliver DJ. The role of acetyl-coenzyme A synthetase in Arabidopsis. Plant Physiol. 147: 1822-1829 (2008).

Lin Q, Li J, Smith RD, Walker JC. Molecular cloning and chromosomal mapping of type one serine/threonine protein phosphatases in Arabidopsis thaliana. Plant Mol. Biol. 37: 471-481 (1998).

Lin R, Teng Y, Park HJ, Ding L, Black C, Fang P, Wang H. Discrete and essential roles of the multiple domains of Arabidopsis FHY3 in mediating phytochrome A signal transduction. Plant Physiol. 148: 981-992 (2008).

Lin R, Wang H. Two homologous ATP-binding cassette transporter proteins, AtMDR1 and AtPGP1, regulate Arabidopsis photomorphogenesis and root development by mediating polar auxin transport. Plant Physiol. 138: 949-964 (2005).

Lin R, Wang H. Arabidopsis FHY3/FAR1 gene family and distinct roles of its members in light control of Arabidopsis development. Plant Physiol. 136: 4010-4022 (2004).

Lin SH, Kuo HF, Canivenc G, Lin CS, Lepetit M, Hsu PK, Tillard P, Lin HL, Wang YY, Tsai CB, Gojon A, Tsay YF. Mutation of the Arabidopsis NRT1.5 nitrate transporter causes defective root-to-shoot nitrate transport. Plant Cell 20: 2514-2528 (2008).

Lin SI, Wang JG, Poon SY, Su CL, Wang SS, Chiou TJ. Differential regulation of FLOWERING LOCUS C expression by vernalization in cabbage and Arabidopsis. Plant Physiol. 137: 1037-1048 (2005).

Lin SS, Martin R, Mongrand S, Vandenabeele S, Chen KC, Jang IC, Chua NH. RING1 E3 ligase localizes to plasma membrane lipid raft to trigger FB1-induced programmed cell death in Arabidopsis. Plant J. 56: 550-561 (2008).

Lin WC, Shuai B, Springer PS. The Arabidopsis LATERAL ORGAN BOUNDARIES-domain gene ASYMMETRIC LEAVES2 functions in the repression of KNOX gene expression and in adaxial-abaxial patterning. Plant Cell 15: 2241-2252 (2003).

Lin WH, Wang Y, Mueller-Roeber B, Brearley CA, Xu ZH, Xue HW. At5PTase13 modulates cotyledon vein development through regulating auxin homeostasis. Plant Physiol. 139: 1677-1691 (2005).

Lin X, Minamisawa N, Takechi K, Zhang W, Sato H, Takio S, Tsukaya H, Takano H. Isolation and characterization of the Larix gmelinii ANGUSTIFOLIA (LgAN) gene. Planta 228: 601-608 (2008).

Lin Y, Cheng CL. A chlorate-resistant mutant defective in the regulation of nitrate reductase gene expression in Arabidopsis defines a new HY locus. Plant Cell 9: 21-35 (1997).

Lin Y, Cluette-Brown JE, Goodman HM. The peroxisome deficient Arabidopsis mutant sse1 exhibits impaired fatty acid synthesis. Plant Physiol. 135: 814-827 (2004).

Lin Y, Hwang CF, Brown JB, Cheng CL. 5' Proximal regions of Arabidopsis nitrate reductase genes direct nitrate-induced transcription in transgenic tobacco. Plant Physiol. 106: 477-484 (1994).

Lin Y, Ulanov AV, Lozovaya V, Widholm J, Zhang G, Guo J, Goodman HM. Genetic and transgenic perturbations of carbon reserve production in Arabidopsis seeds reveal metabolic interactions of biochemical pathways. Planta 225: 153-164 (2006).

Lin Z, Alexander L, Hackett R, Grierson D. LeCTR2, a CTR1-like protein kinase from tomato, plays a role in ethylene signalling, development and defence. Plant J. 54: 1083-1093 (2008).

Lin Z, Arciga-Reyes L, Zhong S, Alexander L, Hackett R, Wilson I, Grierson D. SlTPR1, a tomato tetratricopeptide repeat protein, interacts with the ethylene receptors NR and LeETR1, modulating ethylene and auxin responses and development. J. Exp. Bot. 59: 4271-4287 (2008).

Lindermayr C, Saalbach G, Bahnweg G, Durner J. Differential inhibition of Arabidopsis methionine adenosyltransferases by protein S-nitrosylation. J. Biol. Chem. 281: 4285-4291 (2006).

Lindermayr C, Saalbach G, Durner J. Proteomic identification of S-nitrosylated proteins in Arabidopsis. Plant Physiol. 137: 921-930 (2005).

Lindgren LO, Stalberg KG, Hoglund AS. Seed-specific overexpression of an endogenous Arabidopsis phytoene synthase gene results in delayed germination and increased levels of carotenoids, chlorophyll, and abscisic acid. Plant Physiol. 132: 779-785 (2003).

Lindhout BI, Pinas JE, Hooykaas PJ, van der Zaal BJ. Employing libraries of zinc finger artificial transcription factors to screen for homologous recombination mutants in Arabidopsis. Plant J. 48: 475-483 (2006).

Lindsay WP, McAlister FM, Zhu Q, He XZ, Droge-Laser W, Hedrick S, Doerner P, Lamb C, Dixon RA. KAP-2, a protein that binds to the H-box in a bean chalcone synthase promoter, is a novel plant transcription factor with sequence identity to the large subunit of human Ku autoantigen. Plant Mol. Biol. 49: 503-514 (2002).

Lingard MJ, Gidda SK, Bingham S, Rothstein SJ, Mullen RT, Trelease RN. Arabidopsis PEROXIN11c-e, FISSION1b, and DYNAMIN-RELATED PROTEIN3A cooperate in cell cycle-associated replication of peroxisomes. Plant Cell 20: 1567-1585 (2008).

Link M, Rausch T, Greiner S. In Arabidopsis thaliana, the invertase inhibitors AtC/VIF1 and 2 exhibit distinct target enzyme specificities and expression profiles. FEBS Lett. 573: 105-109 (2004).

Link V, Sinha AK, Vashista P, Hofmann MG, Proels RK, Ehness R, Roitsch T. A heat-activated MAP kinase in tomato: a possible regulator of the heat stress response. FEBS Lett. 531: 179-183 (2002).

Linka M, Weber AP. Shuffling ammonia between mitochondria and plastids during photorespiration. Trends Plant Sci. 10: 461-465 (2005).

Linka N, Theodoulou FL, Haslam RP, Linka M, Napier JA, Neuhaus HE, Weber AP. Peroxisomal ATP import is essential for seedling development in Arabidopsis thaliana. Plant Cell 20: 3241-3257 (2008).

Linke B, Nothnagel T, Borner T. Flower development in carrot CMS plants: mitochondria affect the expression of MADS box genes homologous to GLOBOSA and DEFICIENS. Plant J. 34: 27-37 (2003).

Lino B, Baizabal-Aguirre VM, Gonzalez de la Vara LE. The plasma-membrane H(+)-ATPase from beet root is inhibited by a calcium-dependent phosphorylation. Planta 204: 352-359 (1998).

Lino B, Carrillo-Rayas MT, Chagolla A, Gonzalez de la Vara LE. Purification and characterization of a calcium-dependent protein kinase from beetroot plasma membranes. Planta 225: 255-268 (2006).

Linster CL, Clarke SG. L-Ascorbate biosynthesis in higher plants: the role of VTC2. Trends Plant Sci. 13: 567-573 (2008).

Lintala M, Allahverdiyeva Y, Kangasjarvi S, Lehtimaki N, Keranen M, Rintamaki E, Aro EM, Mulo P. Comparative analysis of leaf-type ferredoxin-NADP oxidoreductase isoforms in Arabidopsis thaliana. Plant J. 57: 1103-1115 (2009).

Lintala M, Allahverdiyeva Y, Kidron H, Piippo M, Battchikova N, Suorsa M, Rintamaki E, Salminen TA, Aro EM, Mulo P. Structural and functional characterization of ferredoxin-NADP+-oxidoreductase using knock-out mutants of Arabidopsis. Plant J. 49: 1041-1052 (2007).

Lionetti V, Raiola A, Camardella L, Giovane A, Obel N, Pauly M, Favaron F, Cervone F, Bellincampi D. Overexpression of pectin methylesterase inhibitors in Arabidopsis restricts fungal infection by Botrytis cinerea. Plant Physiol. 143: 1871-1880 (2007).

Lipka U, Fuchs R, Lipka V. Arabidopsis non-host resistance to powdery mildews. Curr. Opin. Plant Biol. 11: 404-411 (2008).

Lippold F, Sanchez DH, Musialak M, Schlereth A, Scheible WR, Hincha DK, Udvardi MK. AtMyb41 regulates transcriptional and metabolic responses to osmotic stress in Arabidopsis. Plant Physiol. 149: 1761-1772 (2009).

Liscum E, Briggs WR. Mutations in the NPH1 locus of Arabidopsis disrupt the perception of phototropic stimuli. Plant Cell 7: 473-485 (1995).

Liscum E, Briggs WR. Mutations of Arabidopsis in potential transduction and response components of the phototropic signaling pathway. Plant Physiol. 112: 291-296 (1996).

Liscum E, Hangarter RP. Light-stimulated apical hook opening in wild-type Arabidopsis thaliana seedlings. Plant Physiol. 101: 567-572 (1993).

Liscum E, Hangarter RP. Genetic evidence that the red-absorbing form of phytochrome B modulates gravitropism in Arabidopsis thaliana. Plant Physiol. 103: 15-19 (1993).

Liscum E, Reed JW. Genetics of Aux/IAA and ARF action in plant growth and development. Plant Mol. Biol. 49: 387-400 (2002).

Lisec J, Meyer RC, Steinfath M, Redestig H, Becher M, Witucka-Wall H, Fiehn O, Torjek O, Selbig J, Altmann T, Willmitzer L. Identification of metabolic and biomass QTL in Arabidopsis thaliana in a parallel analysis of RIL and IL populations. Plant J. 53: 960-972 (2008).

Lisec J, Steinfath M, Meyer RC, Selbig J, Melchinger AE, Willmitzer L, Altmann T. Identification of heterotic metabolite QTL in Arabidopsis thaliana RIL and IL populations. Plant J. 59: 777-788 (2009).

Lisenbee CS, Heinze M, Trelease RN. Peroxisomal ascorbate peroxidase resides within a subdomain of rough endoplasmic reticulum in wild-type Arabidopsis cells. Plant Physiol. 132: 870-882 (2003).

Lisenbee CS, Lingard MJ, Trelease RN. Arabidopsis peroxisomes possess functionally redundant membrane and matrix isoforms of monodehydroascorbate reductase. Plant J. 43: 900-914 (2005).

Lister R, Chew O, Lee MN, Heazlewood JL, Clifton R, Parker KL, Millar AH, Whelan J. A transcriptomic and proteomic characterization of the Arabidopsis mitochondrial protein import apparatus and its response to mitochondrial dysfunction. Plant Physiol. 134: 777-789 (2004).

Liszewska F, Blaszczyk A, Sirko A. Modification of non-protein thiols contents in transgenic tobacco plants producing bacterial enzymes of cysteine biosynthesis pathway. Acta Biochim. Pol. 48: 647-656 (2001).

Little DY, Rao H, Oliva S, Daniel-Vedele F, Krapp A, Malamy JE. The putative high-affinity nitrate transporter NRT2.1 represses lateral root initiation in response to nutritional cues. Proc. Natl. Acad. Sci. U.S.A. 102: 13693-13698 (2005).

Liu C, Wang T, Zhang W, Li X. Computational identification and analysis of immune-associated nucleotide gene family in Arabidopsis thaliana. J. Plant Physiol. 165: 777-787 (2008).

Liu CJ, Blount JW, Steele CL, Dixon RA. Bottlenecks for metabolic engineering of isoflavone glycoconjugates in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A. 99: 14578-14583 (2002).

Liu CJ, Huhman D, Sumner LW, Dixon RA. Regiospecific hydroxylation of isoflavones by cytochrome p450 81E enzymes from Medicago truncatula. Plant J. 36: 471-484 (2003).

Liu D, Galli M, Crawford M. Engineering variegated floral patterns in tobacco plants using the Arabidopsis transposable element Tag1. Plant Cell Physiol. 42: 419-423 (2001).

Liu D, Song Y, Chen Z, Yu D. Ectopic expression of miR396 suppresses GRF target gene expression and alters leaf growth in Arabidopsis. Physiol. Plant. 136: 223-236 (2009).

Liu F, Ni W, Griffith ME, Huang Z, Chang C, Peng W, Ma H, Xie D. The ASK1 and ASK2 genes are essential for Arabidopsis early development. Plant Cell 16: 5-20 (2004).

Liu F, Vantoai T, Moy LP, Bock G, Linford LD, Quackenbush J. Global transcription profiling reveals comprehensive insights into hypoxic response in Arabidopsis. Plant Physiol. 137: 1115-1129 (2005).

Liu G, Holub EB, Alonso JM, Ecker JR, Fobert PR. An Arabidopsis NPR1-like gene, NPR4, is required for disease resistance. Plant J. 41: 304-318 (2005).

Liu H, Wang Q, Yu M, Zhang Y, Wu Y, Zhang H. Transgenic salt-tolerant sugar beet (Beta vulgaris L.) constitutively expressing an Arabidopsis thaliana vacuolar Na(+)/H(+) antiporter gene, AtNHX3, accumulate more soluble sugar but less salt in storage roots. Plant Cell Environ. 31: 1325-1334 (2008).

Liu HT, Gao F, Cui SJ, Han JL, Sun DY, Zhou RG. Primary evidence for involvement of IP3 in heat-shock signal transduction in Arabidopsis. Cell. Res. 16: 394-400 (2006).

Liu HT, Gao F, Li GL, Han JL, Liu DL, Sun DY, Zhou RG. The calmodulin-binding protein kinase 3 is part of heat-shock signal transduction in Arabidopsis thaliana. Plant J. 55: 760-773 (2008).

Liu HT, Li GL, Chang H, Sun DY, Zhou RG, Li B. Calmodulin-binding protein phosphatase PP7 is involved in thermotolerance in Arabidopsis. Plant Cell Environ. 30: 156-164 (2007).

Liu HT, Sun DY, Zhou RG. Ca2+ and AtCaM3 are involved in the expression of heat shock protein gene in Arabidopsis. Plant Cell Environ. 28: 1276-1284 (2005).

Liu J, Jambunathan N, McNellis TW. Transgenic expression of the von Willebrand A domain of the BONZAI 1/COPINE 1 protein triggers a lesion-mimic phenotype in Arabidopsis. Planta 221: 85-94 (2005).

Liu J, Zhang Y, Qin G, Tsuge T, Sakaguchi N, Luo G, Sun K, Shi D, Aki S, Zheng N, Aoyama T, Oka A, Yang W, Umeda M, Xie Q, Gu H, Qu LJ. Targeted degradation of the cyclin-dependent kinase inhibitor ICK4/KRP6 by RING-type E3 ligases is essential for mitotic cell cycle progression during Arabidopsis gametogenesis. Plant Cell 20: 1538-1554 (2008).

Liu J, Zhu JK. A calcium sensor homolog required for plant salt tolerance. Science 280: 1943-1945 (1998).

Liu J, Zhu JK. Proline accumulation and salt-stress-induced gene expression in a salt-hypersensitive mutant of Arabidopsis. Plant Physiol. 114: 591-596 (1997).

Liu JG, Yao QH, Zhang Z, Peng RH, Xiong AS, Xu F, Zhu H. Isolation and characterization of a cDNA encoding two novel heat-shock factor OsHSF6 and OsHSF12 in Oryza sativa L. J. Biochem. Mol. Biol. 38: 602-608 (2005).

Liu JJ, Ekramoddoullah AK, Piggott N, Zamani A. Molecular cloning of a pathogen/wound-inducible PR10 promoter from Pinus monticola and characterization in transgenic Arabidopsis plants. Planta 221: 159-169 (2005).

Liu JX, Srivastava R, Che P, Howell SH. Salt stress responses in Arabidopsis utilize a signal transduction pathway related to endoplasmic reticulum stress signaling. Plant J. 51: 897-909 (2007).

Liu JX, Srivastava R, Howell SH. Stress-induced expression of an activated form of AtbZIP17 provides protection from salt stress in Arabidopsis. Plant Cell Environ. 31: 1735-1743 (2008).

Liu K, Li L, Luan S. Intracellular K+ sensing of SKOR, a Shaker-type K+ channel from Arabidopsis. Plant J. 46: 260-268 (2006).

Liu KH, Huang CY, Tsay YF. CHL1 is a dual-affinity nitrate transporter of Arabidopsis involved in multiple phases of nitrate uptake. Plant Cell 11: 865-874 (1999).

Liu LH, Ludewig U, Frommer WB, Von Wiren N. AtDUR3 encodes a new type of high-affinity urea/H(+) symporter in Arabidopsis. Plant Cell 15: 790-800 (2003).

Liu LH, Ludewig U, Gassert B, Frommer WB, von Wiren N. Urea transport by nitrogen-regulated tonoplast intrinsic proteins in Arabidopsis. Plant Physiol. 133: 1220-1228 (2003).

Liu PP, Koizuka N, Homrichhausen TM, Hewitt JR, Martin RC, Nonogaki H. Large-scale screening of Arabidopsis enhancer-trap lines for seed germination-associated genes. Plant J. 41: 936-944 (2005).

Liu PP, Koizuka N, Martin RC, Nonogaki H. The BME3 (Blue Micropylar End 3) GATA zinc finger transcription factor is a positive regulator of Arabidopsis seed germination. Plant J. 44: 960-971 (2005).

Liu PP, Montgomery TA, Fahlgren N, Kasschau KD, Nonogaki H, Carrington JC. Repression of AUXIN RESPONSE FACTOR10 by microRNA160 is critical for seed germination and post-germination stages. Plant J. 52: 133-146 (2007).

Liu Q, Kasuga M, Sakuma Y, Abe H, Miura S, Yamaguchi-Shinozaki K, Shinozaki K. Two transcription factors, DREB1 and DREB2, with an EREBP/AP2 DNA binding domain separate two cellular signal transduction pathways in drought- and low-temperature-responsive gene expression, respectively, in Arabidopsis. Plant Cell 10: 1391-1406 (1998).

Liu Q, Yao X, Pi L, Wang H, Cui X, Huang H. The ARGONAUTE10 gene modulates shoot apical meristem maintenance and leaf polarity establishment by repressing miR165/166 in Arabidopsis. Plant J. Nov 28 [Epub ahead of print] (2008).

Liu S, Cheng Y, Zhang X, Guan Q, Nishiuchi S, Hase K, Takano T. Expression of an NADP-malic enzyme gene in rice (Oryza sativa. L) is induced by environmental stresses; over-expression of the gene in Arabidopsis confers salt and osmotic stress tolerance. Plant Mol. Biol. 64: 49-58 (2007).

Liu S, Yu Y, Ruan Y, Meyer D, Wolff M, Xu L, Wang N, Steinmetz A, Shen WH. Plant SET- and RING-associated domain proteins in heterochromatinization. Plant J. 52: 914-926 (2007).

Liu W, Fairbairn DJ, Reid RJ, Schachtman DP. Characterization of two HKT1 homologues from Eucalyptus camaldulensis that display intrinsic osmosensing capability. Plant Physiol. 127: 283-294 (2001).

Liu X, Bush DR. Expression and transcriptional regulation of amino acid transporters in plants. Amino Acids 30: 113-120 (2006).

Liu XL, Covington MF, Fankhauser C, Chory J, Wagner DR. ELF3 encodes a circadian clock-regulated nuclear protein that functions in an Arabidopsis PHYB signal transduction pathway. Plant Cell 13: 1293-1304 (2001).

Liu Y, Ahn JE, Datta S, Salzman RA, Moon J, Huyghues-Despointes B, Pittendrigh B, Murdock LL, Koiwa H, Zhu-Salzman K. Arabidopsis vegetative storage protein is an anti-insect acid phosphatase. Plant Physiol. 139: 1545-1556 (2005).

Liu Y, Koornneef M, Soppe WJ. The absence of histone H2B monoubiquitination in the Arabidopsis hub1 (rdo4) mutant reveals a role for chromatin remodeling in seed dormancy. Plant Cell 19: 433-444 (2007).

Liu Y, Ren D, Pike S, Pallardy S, Gassmann W, Zhang S. Chloroplast-generated reactive oxygen species are involved in hypersensitive response-like cell death mediated by a mitogen-activated protein kinase cascade. Plant J. 51: 941-954 (2007).

Liu Y, Schiff M, Dinesh-Kumar SP. Virus-induced gene silencing in tomato. Plant J. 31: 777-786 (2002).

Liu Y, Wang F, Zhang H, He H, Ma L, Deng XW. Functional characterization of the Arabidopsis ubiquitin-specific protease gene family reveals specific role and redundancy of individual members in development. Plant J. 55: 844-856 (2008).

Liu Y, Zhang S. Phosphorylation of 1-aminocyclopropane-1-carboxylic acid synthase by MPK6, a stress-responsive mitogen-activated protein kinase, induces ethylene biosynthesis in Arabidopsis. Plant Cell 16: 3386-3399 (2004).

Liu Z, Duguay J, Ma F, Wang TW, Tshin R, Hopkins MT, McNamara L, Thompson JE. Modulation of eIF5A1 expression alters xylem abundance in Arabidopsis thaliana. J. Exp. Bot. 59: 939-950 (2008).

Liu Z, Hong SW, Escobar M, Vierling E, Mitchell DL, Mount DW, Hall JD. Arabidopsis UVH6, a homolog of human XPD and yeast RAD3 DNA repair genes, functions in DNA repair and is essential for plant growth. Plant Physiol. 132: 1405-1414 (2003).

Liu Z, Liu Z. The second intron of AGAMOUS drives carpel- and stamen-specific expression sufficient to induce complete sterility in Arabidopsis. Plant Cell Rep. 27: 855-863 (2008).

Liu Z, Makaroff CA. Arabidopsis separase AESP is essential for embryo development and the release of cohesin during meiosis. Plant Cell 18: 1213-1225 (2006).

Liu Z, Taub CC, McClung CR. Identification of an Arabidopsis thaliana ribulose-1,5-bisphosphate carboxylase/oxygenase activase (RCA) minimal promoter regulated by light and the circadian clock. Plant Physiol. 112: 43-51 (1996).

Liu Z, Zhu Y, Gao J, Yu F, Dong A, Shen WH. Molecular and reverse genetic characterization of NUCLEOSOME ASSEMBLY PROTEIN1 (NAP1) genes unravels their function in transcription and nucleotide excision repair in Arabidopsis thaliana. Plant J. 59: 27-38 (2009).

Ljun K, Hul AK, Kowalczyk M, Marchant A, Celenza J, Cohen JD, Sandberg G. Biosynthesis, conjugation, catabolism and homeostasis of indole-3-acetic acid in Arabidopsis thaliana. Plant Mol. Biol. 50: 309-332 (2002).

Ljung K, Bhalerao RP, Sandberg G. Sites and homeostatic control of auxin biosynthesis in Arabidopsis during vegetative growth. Plant J. 28: 465-474 (2001).

Ljung K, Hull AK, Celenza J, Yamada M, Estelle M, Normanly J, Sandberg G. Sites and regulation of auxin biosynthesis in Arabidopsis roots. Plant Cell 17: 1090-1104 (2005).

Ljung K, Hull AK, Kowalczyk M, Marchant A, Celenza J, Cohen JD, Sandberg G. Biosynthesis, conjugation, catabolism and homeostasis of indole-3-acetic acid in Arabidopsis thaliana. Plant Mol. Biol. 49: 249-272 (2002).

Llewellyn DJ, Finnegan EJ, Ellis JG, Dennis ES, Peacock WJ. Structure and expression of an alcohol dehydrogenase 1 gene from Pisum sativum (cv. "Greenfeast"). J. Mol. Biol. 195: 115-123 (1987).

Llic N, Normanly J, Cohen JD. Quantification of free plus conjugated indoleacetic acid in Arabidopsis requires correction for the nonenzymatic conversion of indolic nitriles. Plant Physiol. 111: 781-788 (1996).

Llorente F, Alonso-Blanco C, Sanchez-Rodriguez C, Jorda L, Molina A. ERECTA receptor-like kinase and heterotrimeric G protein from Arabidopsis are required for resistance to the necrotrophic fungus Plectosphaerella cucumerina. Plant J. 43: 165-180 (2005).

Llorente F, Lopez-Cobollo RM, Catala R, Martinez-Zapater JM, Salinas J. A novel cold-inducible gene from Arabidopsis, RCI3, encodes a peroxidase that constitutes a component for stress tolerance. Plant J. 32: 13-24 (2002).

Llorente F, Oliveros JC, Martinez-Zapater JM, Salinas J. A freezing-sensitive mutant of Arabidopsis, frs1, is a new aba3 allele. Planta 211: 648-655 (2000).

Lloyd AM, Walbot V, Davis RW. Arabidopsis and Nicotiana anthocyanin production activated by maize regulators R and C1. Science 258: 1773-1775 (1992).

Lloyd JC, Zakhleniuk OV. Responses of primary and secondary metabolism to sugar accumulation revealed by microarray expression analysis of the Arabidopsis mutant, pho3. J. Exp. Bot. 55: 1221-1230 (2004).

Lloyd JC, Zakhleniuk OV, Raines CA. Identification of mutants in phosphorus metabolism. Ann. Appl. Biol. 138: 111-115 (2001).

Lluch MA, Masferrer A, Arro M, Boronat A, Ferrer A. Molecular cloning and expression analysis of the mevalonate kinase gene from Arabidopsis thaliana. Plant Mol. Biol. 42: 365-376 (2000).

Llusia J, Penuelas J, Munne-Bosch S. Sustained accumulation of methyl salicylate alters antioxidant protection and reduces tolerance of holm oak to heat stress. Physiol. Plant. 124: 353-361 (2005).

Lo M, Taylor C, Wang L, Nowack L, Wang TW, Thompson J. Characterization of an ultraviolet B-induced lipase in Arabidopsis. Plant Physiol. 135: 947-958 (2004).

Lobstein E, Guyon A, Ferault M, Twell D, Pelletier G, Bonhomme S. The putative Arabidopsis homolog of yeast vps52p is required for pollen tube elongation, localizes to Golgi, and might be involved in vesicle trafficking. Plant Physiol. 135: 1480-1490 (2004).

Lochmanova G, Zdrahal Z, Konecna H, Koukalova S, Malbeck J, Soucek P, Valkova M, Kiran NS, Brzobohaty B. Cytokinin-induced photomorphogenesis in dark-grown Arabidopsis: a proteomic analysis. J. Exp. Bot. 59: 3705-3719 (2008).

Loeffler C, Berger S, Guy A, Durand T, Bringmann G, Dreyer M, von Rad U, Durner J, Mueller MJ. B1-phytoprostanes trigger plant defense and detoxification responses. Plant Physiol. 137: 328-340 (2005).

Logan BA, Monson RK, Potosnak MJ. Biochemistry and physiology of foliar isoprene production. Trends Plant Sci. 5: 477-481 (2000).

Logan DC, Scott I, Tobin AK. ADL2a, like ADL2b, is involved in the control of higher plant mitochondrial morphology. J. Exp. Bot. 55: 783-785 (2004).

Logan DC, Scott I, Tobin AK. The genetic control of plant mitochondrial morphology and dynamics. Plant J. 36: 500-509 (2003).

Loguercio LL, Zhang JQ, Wilkins TA. Differential regulation of six novel MYB-domain genes defines two distinct expression patterns in allotetraploid cotton (Gossypium hirsutum L.). Mol. Gen. Genet. 261: 660-671 (1999).

Lohar DP, Schaff JE, Laskey JG, Kieber JJ, Bilyeu KD, Bird DM. Cytokinins play opposite roles in lateral root formation, and nematode and Rhizobial symbioses. Plant J. 38: 203-214 (2004).

Lohmann A, Schottler MA, Brehelin C, Kessler F, Bock R, Cahoon EB, Dormann P. Deficiency in phylloquinone (vitamin K1) methylation affects prenyl quinone distribution, photosystem I abundance and anthocyanin accumulation in the arabidopsis AtmenG mutant. J. Biol. Chem. 281: 40461-40472 (2006).

Lohmann C, Eggers-Schumacher G, Wunderlich M, Schoffl F. Two different heat shock transcription factors regulate immediate early expression of stress genes in Arabidopsis. Mol. Genet. Genomics 271: 11-21 (2004).

Lohmann JU, Hong RL, Hobe M, Busch MA, Parcy F, Simon R, Weigel D. A molecular link between stem cell regulation and floral patterning in Arabidopsis. Cell 105: 793-803 (2001).

Lohrig K, Muller B, Davydova J, Leister D, Wolters DA. Phosphorylation site mapping of soluble proteins: bioinformatical filtering reveals potential plastidic phosphoproteins in Arabidopsis thaliana. Planta 229: 1123-1134 (2009).

Lois LM, Lima CD, Chua NH. Small ubiquitin-like modifier modulates abscisic acid signaling in Arabidopsis. Plant Cell 15: 1347-1359 (2003).

Loivamaki M, Gilmer F, Fischbach RJ, Sorgel C, Bachl A, Walter A, Schnitzler JP. Arabidopsis, a model to study biological functions of isoprene emission? Plant Physiol. 144: 1066-1078 (2007).

Loivamaki M, Louis S, Cinege G, Zimmer I, Fischbach RJ, Schnitzler JP. Circadian rhythms of isoprene biosynthesis in grey poplar leaves. Plant Physiol. 143: 540-551 (2007).

Loizeau K, De Brouwer V, Gambonnet B, Yu A, Renou JP, Van Der Straeten D, Lambert WE, Rebeille F, Ravanel S. A genome-wide and metabolic analysis determined the adaptive response of Arabidopsis cells to folate depletion induced by methotrexate. Plant Physiol. 148: 2083-2095 (2008).

Loizeau K, Gambonnet B, Zhang GF, Curien G, Jabrin S, Van Der Straeten D, Lambert WE, Rebeille F, Ravanel S. Regulation of one-carbon metabolism in Arabidopsis: the N-terminal regulatory domain of cystathionine gamma-synthase is cleaved in response to folate starvation. Plant Physiol. 145: 491-503 (2007).

Loke JC, Stahlberg EA, Strenski DG, Haas BJ, Wood PC, Li QQ. Compilation of mRNA polyadenylation signals in Arabidopsis revealed a new signal element and potential secondary structures. Plant Physiol. 138: 1457-1468 (2005).

Long JC, Jenkins GI. Involvement of plasma membrane redox activity and calcium homeostasis in the UV-B and UV-A/blue light induction of gene expression in Arabidopsis. Plant Cell 10: 2077-2086 (1998).

Long TA, Okegawa Y, Shikanai T, Schmidt GW, Covert SF. Conserved role of PROTON GRADIENT REGULATION 5 in the regulation of PSI cyclic electron transport. Planta 228: 907-918 (2008).

Loomis WF, Shaulsky G, Wang N. Histidine kinases in signal transduction pathways of eukaryotes. J. Cell Sci. 110: 1141-1145 (1997).

Lopato S, Borisjuk L, Milligan AS, Shirley N, Bazanova N, Langridge P. Systematic identification of factors involved in post-transcriptional processes in wheat grain. Plant Mol. Biol. 62: 637-653 (2006).

Lopez-Bucio J, Hernandez-Abreu E, Sanchez-Calderon L, Nieto-Jacobo MF, Simpson J, Herrera-Estrella L. Phosphate availability alters architecture and causes changes in hormone sensitivity in the Arabidopsis root system. Plant Physiol. 129: 244-256 (2002).

Lopez-Bucio J, Hernandez-Abreu E, Sanchez-Calderon L, Perez-Torres A, Rampey RA, Bartel B, Herrera-Estrella L. An auxin transport independent pathway is involved in phosphate stress-induced root architectural alterations in Arabidopsis. Identification of BIG as a mediator of auxin in pericycle cell activation. Plant Physiol. 137: 681-691 (2005).

Lopez-Carbonell M, Jauregui O. A rapid method for analysis of abscisic acid (ABA) in crude extracts of water stressed Arabidopsis thaliana plants by liquid chromatography--mass spectrometry in tandem mode. Plant Physiol. Biochem. 43: 407-411 (2005).

Lopez-Molina L, Mongrand S, McLachlin DT, Chait BT, Chua NH. ABI5 acts downstream of ABI3 to execute an ABA-dependent growth arrest during germination. Plant J. 32: 317-328 (2002).

Lopukhina A, Dettenberg M, Weiler EW, Hollander-Czytko H. Cloning and characterization of a coronatine-regulated tyrosine aminotransferase from Arabidopsis. Plant Physiol. 126: 1678-1687 (2001).

Loque D, Ludewig U, Yuan L, von Wiren N. Tonoplast intrinsic proteins AtTIP2;1 and AtTIP2;3 facilitate NH3 transport into the vacuole. Plant Physiol. 137: 671-680 (2005).

Loque D, Tillard P, Gojon A, Lepetit M. Gene expression of the NO3- transporter NRT1.1 and the nitrate reductase NIA1 is repressed in Arabidopsis roots by NO2-, the product of NO3- reduction. Plant Physiol. 132: 958-967 (2003).

Loque D, Yuan L, Kojima S, Gojon A, Wirth J, Gazzarrini S, Ishiyama K, Takahashi H, von Wiren N. Additive contribution of AMT1;1 and AMT1;3 to high-affinity ammonium uptake across the plasma membrane of nitrogen-deficient Arabidopsis roots. Plant J. 48: 522-534 (2006).

Lorence A, Chevone BI, Mendes P, Nessler CL. Myo-inositol oxygenase offers a possible entry point into plant ascorbate biosynthesis. Plant Physiol. 134: 1200-1205 (2004).

Lorenz S, Tintelnot S, Reski R, Decker EL. Cyclin D-knockout uncouples developmental progression from sugar availability. Plant Mol. Biol. 53: 227-236 (2003).

Lorenzen I, Aberle T, Plieth C. Salt stress-induced chloride flux: a study using transgenic Arabidopsis expressing a fluorescent anion probe. Plant J. 38: 539-544 (2004).

Lorenzen M, Racicot V, Strack D, Chapple C. Sinapic acid ester metabolism in wild type and a sinapoylglucose-accumulating mutant of Arabidopsis. Plant Physiol. 112: 1625-1630 (1996).

Lorenzo O, Chico JM, Sanchez-Serrano JJ, Solano R. JASMONATE-INSENSITIVE1 encodes a MYC transcription factor essential to discriminate between different jasmonate-regulated defense responses in Arabidopsis. Plant Cell 16: 1938-1950 (2004).

Lorenzo O, Solano R. Molecular players regulating the jasmonate signalling network. Curr. Opin. Plant Biol. 8: 532-540 (2005).

Loreti E, Poggi A, Novi G, Alpi A, Perata P. A genome-wide analysis of the effects of sucrose on gene expression in Arabidopsis seedlings under anoxia. Plant Physiol. 137: 1130-1138 (2005).

Loreto F, Barta C, Brilli F, Nogues I. On the induction of volatile organic compound emissions by plants as consequence of wounding or fluctuations of light and temperature. Plant Cell Environ. 29: 1820-1828 (2006).

Lorimer G. An early Arabidopsis demonstration resolving a few issues concerning photorespiration. Plant Physiol. 127: 3 (2001).

Lorkovic ZJ. Role of plant RNA-binding proteins in development, stress response and genome organization. Trends Plant Sci. 14: 229-236 (2009).

Lorrain S, Allen T, Duek PD, Whitelam GC, Fankhauser C. Phytochrome-mediated inhibition of shade avoidance involves degradation of growth-promoting bHLH transcription factors. Plant J. 53: 312-323 (2008).

Lorrain S, Genoud T, Fankhauser C. Let there be light in nucleus! Curr. Opin. Plant Biol. 9: 509-514 (2006).

Loschelder H, Schweer J, Link B, Link G. Dual temporal role of plastid sigma factor 6 in Arabidopsis development. Plant Physiol. 142: 642-650 (2006).

Loscos J, Naya L, Ramos J, Clemente MR, Matamoros MA, Becana M. A reassessment of substrate specificity and activation of phytochelatin synthases from model plants by physiologically relevant metals. Plant Physiol. 140: 1213-1221 (2006).

Lou P, Zhao J, He H, Hanhart C, Pino Del Carpio D, Verkerk R, Custers J, Koornneef M, Bonnema G. Quantitative trait loci for glucosinolate accumulation in Brassica rapa leaves. New Phytol. 179: 1017-1032 (2008).

Lou P, Zhao J, Kim JS, Shen S, Del Carpio DP, Song X, Jin M, Vreugdenhil D, Wang X, Koornneef M, Bonnema G. Quantitative trait loci for flowering time and morphological traits in multiple populations of Brassica rapa. J. Exp. Bot. 58: 4005-4016 (2007).

Lou Y, Ma H, Lin WH, Chu ZQ, Mueller-Roeber B, Xu ZH, Xue HW. The highly charged region of plant beta-type phosphatidylinositol 4-kinase is involved in membrane targeting and phospholipid binding. Plant Mol. Biol. 60: 729-746 (2006).

Loudet O, Chaillou S, Merigout P, Talbotec J, Daniel-Vedele F. Quantitative trait loci analysis of nitrogen use efficiency in Arabidopsis. Plant Physiol. 131: 345-358 (2003).

Loudet O, Saliba-Colombani V, Camilleri C, Calenge F, Gaudon V, Koprivova A, North KA, Kopriva S, Daniel-Vedele F. Natural variation for sulfate content in Arabidopsis thaliana is highly controlled by APR2. Nat. Genet. 39: 896-900 (2007).

Louie M, Kondor N, DeWitt JG. Gene expression in cadmium-tolerant Datura innoxia: detection and characterization of cDNAs induced in response to Cd2+. Plant Mol. Biol. 52: 81-89 (2003).

Loukoianov A, Yan L, Blechl A, Sanchez A, Dubcovsky J. Regulation of VRN-1 vernalization genes in normal and transgenic polyploid wheat. Plant Physiol. 138: 2364-2373 (2005).

Loutre C, Dixon DP, Brazier M, Slater M, Cole DJ, Edwards R. Isolation of a glucosyltransferase from Arabidopsis thaliana active in the metabolism of the persistent pollutant 3,4-dichloroaniline. Plant J. 34: 485-493 (2003).

Louvet R, Cavel E, Gutierrez L, Guenin S, Roger D, Gillet F, Guerineau F, Pelloux J. Comprehensive expression profiling of the pectin methylesterase gene family during silique development in Arabidopsis thaliana. Planta 224: 782-791 (2006).

Love AJ, Yun BW, Laval V, Loake GJ, Milner JJ. Cauliflower mosaic virus, a compatible pathogen of Arabidopsis, engages three distinct defense-signaling pathways and activates rapid systemic generation of reactive oxygen species. Plant Physiol. 139: 935-948 (2005).

Love CG, Batley J, Lim G, Robinson AJ, Savage D, Singh D, Spangenberg GC, Edwards D. New computational tools for brassica genome research. Comp. Funct. Genomics 5: 276-280 (2004).

Love J, Dodd AN, Webb AA. Circadian and diurnal calcium oscillations encode photoperiodic information in Arabidopsis. Plant Cell 16: 956-966 (2004).

Low D, Brandle K, Nover L, Forreiter C. Cytosolic heat-stress proteins Hsp17.7 class I and Hsp17.3 class II of tomato act as molecular chaperones in vivo. Planta 211: 575-582 (2000).

Loyola-Vargas VM, Broeckling CD, Badri D, Vivanco JM. Effect of transporters on the secretion of phytochemicals by the roots of Arabidopsis thaliana. Planta 225: 301-310 (2007).

Lu BB, Yuan YZ, Zhang CF, Ou JQ, Zhou W, Lin QH. Modulation of key enzymes involved in ammonium assimilation and carbon metabolism by low temperature in rice (Oryza sativa L.) roots. Plant Sci. 169: 295-302 (2005).

Lu C, Fulda M, Wallis JG, Browse J. A high-throughput screen for genes from castor that boost hydroxy fatty acid accumulation in seed oils of transgenic Arabidopsis. Plant J. 45: 847-856 (2006).

Lu C, Hills MJ. Arabidopsis mutants deficient in diacylglycerol acyltransferase display increased sensitivity to abscisic acid, sugars, and osmotic stress during germination and seedling development. Plant Physiol. 129: 1352-1358 (2002).

Lu CL, de Noyer SB, Hobbs DH, Kang J, Wen Y, Krachtus D, Hills MJ. Expression pattern of diacylglycerol acyltransferase-1, an enzyme involved in triacylglycerol biosynthesis, in Arabidopsis thaliana. Plant Mol. Biol. 52: 31-41 (2003).

Lu DP, Christopher DA. Light enhances the unfolded protein response as measured by BiP2 gene expression and the secretory GFP-2SC marker in Arabidopsis. Physiol. Plant. 134: 360-368 (2008).

Lu G, Gao C, Zheng X, Han B. Identification of OsbZIP72 as a positive regulator of ABA response and drought tolerance in rice. Planta 229: 605-615 (2009).

Lu G, Sehnke PC, Ferl RJ. Phosphorylation and calcium binding properties of an Arabidopsis GF14 brain protein homolog. Plant Cell 6: 501-510 (1994).

Lu H, Liu Y, Greenberg JT. Structure-function analysis of the plasma membrane- localized Arabidopsis defense component ACD6. Plant J. 44: 798-809 (2005).

Lu H, McKnight TD. Tissue-specific expression of the beta-subunit of tryptophan synthase in Camptotheca acuminata, an indole alkaloid-producing plant. Plant Physiol. 120: 43-52 (1999).

Lu H, Rate DN, Song JT, Greenberg JT. ACD6, a novel ankyrin protein, is a regulator and an effector of salicylic acid signaling in the Arabidopsis defense response. Plant Cell 15: 2408-2420 (2003).

Lu H, Salimian S, Gamelin E, Wang G, Fedorowski J, LaCourse W, Greenberg JT. Genetic analysis of acd6-1 reveals complex defense networks and leads to identification of novel defense genes in Arabidopsis. Plant J. 58: 401-412 (2009).

Lu PL, Chen NZ, An R, Su Z, Qi BS, Ren F, Chen J, Wang XC. A novel drought-inducible gene, ATAF1, encodes a NAC family protein that negatively regulates the expression of stress-responsive genes in Arabidopsis. Plant Mol. Biol. 63: 289-305 (2007).

Lu S, Song T, Kosma DK, Parson EP, Rowland O, Jenks MA. Arabidopsis CER8 encodes a long-chain acyl CoA synthetase 1 (LACS1) and has overlapping functions with LACS2 in plant wax and cutin synthesis. Plant J. 59: 553-564 (2009).

Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL. Novel and mechanical stress-responsive microRNAs in Populus trichocarpa that are absent from Arabidopsis. Plant Cell 17: 2186-2203 (2005).

Lu SX, Hrabak EM. An Arabidopsis calcium-dependent protein kinase is associated with the endoplasmic reticulum. Plant Physiol. 128: 1008-1021 (2002).

Lu SX, Knowles SM, Andronis C, Ong MS, Tobin EM. CIRCADIAN CLOCK ASSOCIATED1 and LATE ELONGATED HYPOCOTYL function synergistically in the circadian clock of Arabidopsis. Plant Physiol. 150: 834-843 (2009).

Lu Y, Curtiss J, Miranda D, Hughs E, Zhang J. ATG-anchored AFLP (ATG-AFLP) analysis in cotton. Plant Cell Rep. 27: 1645-1653 (2008).

Lu Y, Gehan JP, Sharkey TD. Daylength and circadian effects on starch degradation and maltose metabolism. Plant Physiol. 138: 2280-2291 (2005).

Lu Y, Sharkey TD. The role of amylomaltase in maltose metabolism in the cytosol of photosynthetic cells. Planta 218: 466-473 (2004).

Lu Y, Steichen JM, Weise SE, Sharkey TD. Cellular and organ level localization of maltose in maltose-excess Arabidopsis mutants. Planta 224: 935-943 (2006).

Lu Y, Steichen JM, Yao J, Sharkey TD. The role of cytosolic {alpha}-glucan phosphorylase in maltose metabolism and the comparison of amylomaltase in Arabidopsis and Escherichia coli. Plant Physiol. 142: 878-889 (2006).

Lu YP, Li ZS, Drozdowicz YM, Hortensteiner S, Martinoia E, Rea PA. AtMRP2, an Arabidopsis ATP binding cassette transporter able to transport glutathione S-conjugates and chlorophyll catabolites. Functional comparisons with atmrp1 functional comparisons with AtMRP1. Plant Cell 10: 267-282 (1998).

Lu YP, Li ZS, Rea PA. AtMRP1 gene of Arabidopsis encodes a glutathione S-conjugate pump: isolation and functional definition of a plant ATP-binding cassette transporter gene. Proc. Natl. Acad. Sci. U.S.A. 94: 8243-8248 (1997).

Luan S. Protein phosphatases in plants. Annu. Rev. Plant Biol. 54: 63-92 (2003).

Lucas JR, Nadeau JA, Sack FD. Microtubule arrays and Arabidopsis stomatal development. J. Exp. Bot. 57: 71-79 (2006).

Lucas KA, Filley JR, Erb JM, Graybill ER, Hawes JW. Peroxisomal metabolism of propionic acid and isobutyric acid in plants. J. Biol. Chem. 282: 24980-24989 (2007).

Luccioni LG, Oliverio KA, Yanovsky MJ, Boccalandro HE, Casal JJ. Brassinosteroid mutants uncover fine tuning of phytochrome signaling. Plant Physiol. 128: 173-181 (2002).

Lucena C, Waters BM, Romera FJ, Garcia MJ, Morales M, Alcantara E, Perez-Vicente R. Ethylene could influence ferric reductase, iron transporter, and H+-ATPase gene expression by affecting FER (or FER-like) gene activity. J. Exp. Bot. 57: 4145-4154 (2006).

Ludwig A, Stolz J, Sauer N. Plant sucrose-H+ symporters mediate the transport of vitamin H. Plant J. 24: 503-509 (2000).

Ludwig-Muller J, Krishna P, Forreiter C. A glucosinolate mutant of Arabidopsis is thermosensitive and defective in cytosolic Hsp90 expression after heat stress. Plant Physiol. 123: 949-958 (2000).

Ludwig-Muller J, Pieper K, Ruppel M, Cohen JD, Epstein E, Kiddle G, Bennett R. Indole glucosinolate and auxin biosynthesis in Arabidopsis thaliana (L.) Heynh. glucosinolate mutants and the development of clubroot disease. Planta 208: 409-419 (1999).

Ludwig-Muller J, Vertocnik A, Town CD. Analysis of indole-3-butyric acid-induced adventitious root formation on Arabidopsis stem segments. J. Exp. Bot. 56: 2095-2105 (2005).

Luesse DR, Deblasio SL, Hangarter RP. Plastid Movement Impaired 2, a new gene involved in normal blue-light-induced chloroplast movements in Arabidopsis thaliana. Plant Physiol. 141: 1328-1337 (2006).

Luethy MH, Miernyk JA, Randall DD. The mitochondrial pyruvate dehydrogenase complex: nucleotide and deduced amino-acid sequences of a cDNA encoding the Arabidopsis thaliana E1 alpha-subunit. Gene 164: 251-254 (1995).

Lugan R, Niogret MF, Kervazo L, Larher FR, Kopka J, Bouchereau A. Metabolome and water status phenotyping of Arabidopsis under abiotic stress cues reveals new insight into ESK1 function. Plant Cell Environ. 32: 95-108 (2009).

Lugli J, Campbell A, Gaziola SA, Smith RJ, Lea PJ, Azevedo RA. Enzymes of lysine metabolism from Coix lacryma-jobi seeds. Plant Physiol. Biochem. 40: 25-32 (2002).

Luhua S, Ciftci-Yilmaz S, Harper J, Cushman J, Mittler R. Enhanced tolerance to oxidative stress in transgenic Arabidopsis thaliana plants expressing proteins of unknown function. Plant Physiol. 148: 280-292 (2008).

Lukowitz W, Gillmor CS, Scheible WR. Positional cloning in Arabidopsis. Why it feels good to have a genome initiative working for you. Plant Physiol. 123: 795-806 (2000).

Lum HK, Kwok F, Lo SC. Cloning and characterization of Arabidopsis thaliana pyridoxal kinase. Planta 215: 870-879 (2002).

Lundmark M, Cavaco AM, Trevanion S, Hurry V. Carbon partitioning and export in transgenic Arabidopsis thaliana with altered capacity for sucrose synthesis grown at low temperature: a role for metabolite transporters. Plant Cell Environ. 29: 1703-1714 (2006).

Lung SC, Chan WL, Yip W, Wang LJ, Yeung EC, Lim BL. Secretion of beta-propeller phytase from tobacco and Arabidopsis roots enhances phosphorus utilization. Plant Sci. 169: 341-349 (2005).

Lunn JE. Compartmentation in plant metabolism. J. Exp. Bot. 58: 35-47 (2007).

Lunn JE, Ashton AR, Hatch MD, Heldt HW. Purification, molecular cloning, and sequence analysis of sucrose-6F-phosphate phosphohydrolase from plants. Proc. Natl. Acad. Sci. U.S.A. 97: 12914-12919 (2000).

Luo B, Xue XY, Hu WL, Wang LJ, Chen XY. An ABC transporter gene of Arabidopsis thaliana, AtWBC11, is involved in cuticle development and prevention of organ fusion. Plant Cell Physiol. 48: 1790-1802 (2007).

Luo GZ, Wang HW, Huang J, Tian AG, Wang YJ, Zhang JS, Chen SY. A putative plasma membrane cation/proton antiporter from soybean confers salt tolerance in Arabidopsis. Plant Mol. Biol. 59: 809-820 (2005).

Luo H, Lee JY, Hu Q, Nelson-Vasilchik K, Eitas TK, Lickwar C, Kausch AP, Chandlee JM, Hodges TK. RTS, a rice anther-specific gene is required for male fertility and its promoter sequence directs tissue-specific gene expression in different plant species. Plant Mol. Biol. 62: 397-408 (2006).

Luo J, Butelli E, Hill L, Parr A, Niggeweg R, Bailey P, Weisshaar B, Martin C. AtMYB12 regulates caffeoyl quinic acid and flavonol synthesis in tomato; expression in fruit results in very high levels of both types of polyphenol. Plant J. 56: 316-326 (2008).

Luo J, Fuell C, Parr A, Hill L, Bailey P, Elliott K, Fairhurst SA, Martin C, Michael AJ. A novel polyamine acyltransferase responsible for the accumulation of spermidine conjugates in Arabidopsis seed. Plant Cell 21: 318-333 (2009).

Luo J, Nishiyama Y, Fuell C, Taguchi G, Elliott K, Hill L, Tanaka Y, Kitayama M, Yamazaki M, Bailey P, Parr A, Michael AJ, Saito K, Martin C. Convergent evolution in the BAHD family of acyl transferases: identification and characterization of anthocyanin acyl transferases from Arabidopsis thaliana. Plant J. 50: 678-695 (2007).

Luo J, Shen G, Yan J, He C, Zhang H. AtCHIP functions as an E3 ubiquitin ligase of protein phosphatase 2A subunits and alters plant response to abscisic acid treatment. Plant J. 46: 649-657 (2006).

Luo K, Deng W, Xu S, Pei Y. Functional analysis of the Arabidopsis thaliana poly(A) binding protein PAB5 gene promoter in Nicotiana tabacum. Plant Cell Rep. 27: 1811-1819 (2008).

Luo M, Xiao Y, Li X, Lu X, Deng W, Li D, Hou L, Hu M, Li Y, Pei Y. GhDET2, a steroid 5alpha-reductase, plays an important role in cotton fiber cell initiation and elongation. Plant J. 51: 419-430 (2007).

Luo Y, Koop HU. Somatic embryogenesis in cultured immature zygotic embryos and leaf protoplasts of Arabidopsis thaliana ecotypes. Planta 202: 387-396 (1997).

Luo Z, Chen Z. Improperly terminated, unpolyadenylated mRNA of sense transgenes is targeted by RDR6-mediated RNA silencing in Arabidopsis. Plant Cell 19: 943-958 (2007).

Luo Z, Yang Z, Zhong B, Li Y, Xie R, Zhao F, Ling Y, He G. Genetic analysis and fine mapping of a dynamic rolled leaf gene, RL10(t), in rice (Oryza sativa L.). Genome 50: 811-817 (2007).

Luquez VM, Sasal Y, Medrano M, Martin MI, Mujica M, Guiamet JJ. Quantitative trait loci analysis of leaf and plant longevity in Arabidopsis thaliana. J. Exp. Bot. 57: 1363-1372 (2006).

Lurin C, Andres C, Aubourg S, Bellaoui M, Bitton F, Bruyere C, Caboche M, Debast C, Gualberto J, Hoffmann B, Lecharny A, Le Ret M, Martin-Magniette ML, Mireau H, Peeters N, Renou JP, Szurek B, Taconnat L, Small I. Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis. Plant Cell 16: 2089-2103 (2004).

Lutz KA, Maliga P. Lack of conservation of editing sites in mRNAs that encode subunits of the NAD(P)H dehydrogenase complex in plastids and mitochondria of Arabidopsis thaliana. Curr. Genet. 40: 214-219 (2001).

Lutziger I, Oliver DJ. Characterization of two cDNAs encoding mitochondrial lipoamide dehydrogenase from Arabidopsis. Plant Physiol. 127: 615-623 (2001).

Lutziger I, Oliver DJ. Molecular evidence of a unique lipoamide dehydrogenase in plastids: analysis of plastidic lipoamide dehydrogenase from Arabidopsis thaliana. FEBS Lett. 484: 12-16 (2000).

Luu DT, Maurel C. Aquaporins in a challenging environment: molecular gears for adjusting plant water status. Plant Cell Environ. 28: 85-96 (2005).

Lux A, Morita S, Abe J, Ito K. An improved method for clearing and staining free-hand sections and whole-mount samples. Ann. Bot. (Lond.) 96: 989-996 (2005).

Lyi SM, Heller LI, Rutzke M, Welch RM, Kochian LV, Li L. Molecular and biochemical characterization of the selenocysteine Se-methyltransferase gene and Se-methylselenocysteine synthesis in broccoli. Plant Physiol. 138: 409-420 (2005).

Lyons E, Pedersen B, Kane J, Alam M, Ming R, Tang H, Wang X, Bowers J, Paterson A, Lisch D, Freeling M. Finding and comparing syntenic regions among Arabidopsis and the outgroups papaya, poplar and grape: CoGe with rosids. Plant Physiol. 148: 1772-1781 (2008).

Lyska D, Paradies S, Meierhoff K, Westhoff P. HCF208, a homolog of Chlamydomonas CCB2, is required for accumulation of native cytochrome b6 in Arabidopsis thaliana. Plant Cell Physiol. 48: 1737-1746 (2007).

Lyyra S, Meagher RB, Kim T, Heaton A, Montello P, Balish RS, Merkle SA. Coupling two mercury resistance genes in Eastern cottonwood enhances the processing of organomercury. Plant Biotechnol. J. 5: 254-262 (2007).

Ma C, Haslbeck M, Babujee L, Jahn O, Reumann S. Identification and characterization of a stress-inducible and a constitutive small heat-shock protein targeted to the matrix of plant peroxisomes. Plant Physiol. 141: 47-60 (2006).

Ma C, Reumann S. Improved prediction of peroxisomal PTS1 proteins from genome sequences based on experimental subcellular targeting analyses as exemplified for protein kinases from Arabidopsis. J. Exp. Bot. 59: 3767-3779 (2008).

Ma H, Xu SP, Luo D, Xu ZH, Xue HW. OsPIPK 1, a rice phosphatidylinositol monophosphate kinase, regulates rice heading by modifying the expression of floral induction genes. Plant Mol. Biol. 54: 295-310 (2004).

Ma J, SanMiguel P, Lai J, Messing J, Bennetzen JL. DNA rearrangement in orthologous orp regions of the maize, rice and sorghum genomes. Genetics 170: 1209-1220 (2005).

Ma JF, Nagao S, Huang CF, Nishimura M. Isolation and characterization of a rice mutant hypersensitive to Al. Plant Cell Physiol. 46: 1054-1061 (2005).

Ma L, Gao Y, Qu L, Chen Z, Li J, Zhao H, Deng XW. Genomic evidence for COP1 as a repressor of light-regulated gene expression and development in Arabidopsis. Plant Cell 14: 2383-2398 (2002).

Ma L, Sun N, Liu X, Jiao Y, Zhao H, Deng XW. Organ-specific expression of Arabidopsis genome during development. Plant Physiol. 138: 80-91 (2005).

Ma L, Xie B, Hong Z, Verma DP, Zhang Z. A novel RNA binding protein associated with cell plate formation. Plant Physiol. 148: 223-234 (2008).

Ma QH, Wang XM. Characterization of an ethylene receptor homologue from wheat and its expression during leaf senescence. J. Exp. Bot. 54: 1489-1490 (2003).

Ma S, Gong Q, Bohnert HJ. Dissecting salt stress pathways. J. Exp. Bot. 57: 1097-1107 (2006).

Ma S, Quist TM, Ulanov A, Joly R, Bohnert HJ. Loss of TIP1;1 aquaporin in Arabidopsis leads to cell and plant death. Plant J. 40: 845-859 (2004).

Ma SY, Wu WH. AtCPK23 functions in Arabidopsis responses to drought and salt stresses. Plant Mol. Biol. 65: 511-518 (2007).

Ma W, Smigel A, Tsai YC, Braam J, Berkowitz GA. Innate immunity signaling: cytosolic Ca2+ elevation is linked to downstream nitric oxide generation through the action of calmodulin or a calmodulin-like protein. Plant Physiol. 148: 818-828 (2008).

Ma X, Browse J. Altered rates of protein transport in Arabidopsis mutants deficient in chloroplast membrane unsaturation. Phytochemistry 67: 1629-1636 (2006).

Ma YP, Fang XH, Chen F, Dai SL. DFL, a FLORICAULA/LEAFY homologue gene from Dendranthema lavandulifolium is expressed both in the vegetative and reproductive tissues. Plant Cell Rep. 27: 647-654 (2008).

Ma Z, Baskin TI, Brown KM, Lynch JP. Regulation of root elongation under phosphorus stress involves changes in ethylene responsiveness. Plant Physiol. 131: 1381-1390 (2003).

Maass D, Arango J, Wüst F, Beyer P, Welsch R. Carotenoid crystal formation in Arabidopsis and carrot roots caused by increased phytoene synthase protein levels. PLoS One 4: e6373 (2009).

Maathuis F, Verlin D, Smith FA, Sanders D, Fernandez JA, Walker NA. The physiological relevance of Na+-coupled K+-transport. Plant Physiol. 112: 1609-1616 (1996).

Maathuis FJ. cGMP modulates gene transcription and cation transport in Arabidopsis roots. Plant J. 45: 700-711 (2006).

Maathuis FJ, Filatov V, Herzyk P, C Krijger G, B Axelsen K, Chen S, Green BJ, Li Y, Madagan KL, Sanchez-Fernandez R, Forde BG, Palmgren MG, Rea PA, Williams LE, Sanders D, Amtmann A. Transcriptome analysis of root transporters reveals participation of multiple gene families in the response to cation stress. Plant J. 35: 675-692 (2003).

Maathuis FJ, Sanders D. Characterization of csi52, a Cs+ resistant mutant of Arabidopsis thaliana altered in K+ transport. Plant J. 10: 579-589 (1996).

Maathuis FJ, Sanders D. Sodium uptake in Arabidopsis roots is regulated by cyclic nucleotides. Plant Physiol. 127: 1617-1625 (2001).

Maathuis FJ, Sanders D. Mechanism of high-affinity potassium uptake in roots of Arabidopsis thaliana. Proc. Natl. Acad. Sci. U.S.A. 91: 9272-9276 (1994).

Maathuis FJ, Sanders D. Contrasting roles in ion transport of two K(+)-channel types in root cells of Arabidopsis thaliana. Planta 197: 456-464 (1995).

Maathuis FJ, Sanders D, Gradmann D. Kinetics of high-affinity K+ uptake in plants, derived from K(+)-induced changes in current-voltage relationships. A modelling approach to the analysis of carrier-mediated transport. Planta 203: 229-236 (1997).

Mabood F, Smith DL. Pre-incubation of Bradyrhizobium japonicum with jasmonates accelerates nodulation and nitrogen fixation in soybean (Glycine max) at optimal and suboptimal root zone temperatures. Physiol. Plant. 125: 311-323 (2005).

Macasev D, Newbigin E, Whelan J, Lithgow T. How do plant mitochondria avoid importing chloroplast proteins? Components of the import apparatus Tom20 and Tom22 from Arabidopsis differ from their fungal counterparts. Plant Physiol. 123: 811-816 (2000).

MacCleery SA, Kiss JZ. Plastid sedimentation kinetics in roots of wild-type and starch-deficient mutants of Arabidopsis. Plant Physiol. 120: 183-192 (1999).

MacGregor DR, Deak KI, Ingram PA, Malamy JE. Root system architecture in Arabidopsis grown in culture is regulated by sucrose uptake in the aerial tissues. Plant Cell 20: 2643-2660 (2008).

Machado A, Wu Y, Yang Y, Llewellyn DJ, Dennis ES. The MYB transcription factor GhMYB25 regulates early fibre and trichome development. Plant J. 59: 52-62 (2009).

MacIntosh GC, Wilkerson C, Green PJ. Identification and analysis of Arabidopsis expressed sequence tags characteristic of non-coding RNAs. Plant Physiol. 127: 765-776 (2001).

Mackerness SAH, Surplus SL, Blake P, John CF, Buchanan-Wollaston V, Jordan BR, Thomas B. Ultraviolet-B-induced stress and changes in gene expression in Arabidopsis thaliana: role of signalling pathways controlled by jasmonic acid, ethylene and reactive oxygen species. Plant Cell Environ. 22: 1413-1423 (1999).

Mackinnon IM, Sturcova A, Sugimoto-Shirasu K, His I, McCann MC, Jarvis MC. Cell-wall structure and anisotropy in procuste, a cellulose synthase mutant of Arabidopsis thaliana. Planta 224: 438-448 (2006).

Macko S, Wehner A, Jahns P. Comparison of violaxanthin de-epoxidation from the stroma and lumen sides of isolated thylakoid membranes from Arabidopsis: implications for the mechanism of de-epoxidation. Planta 216: 309-314 (2002).

Maclean D, Jerome CA, Brown AP, Gray JC. Co-regulation of nuclear genes encoding plastid ribosomal proteins by light and plastid signals during seedling development in tobacco and Arabidopsis. Plant Mol. Biol. 66: 475-490 (2008).

MacMillan J, Ward DA, Phillips AL, Sanchez-Beltran MJ, Gaskin P, Lange T, Hedden P. Gibberellin biosynthesis from gibberellin A12-aldehyde in endosperm and embryos of Marah macrocarpus. Plant Physiol. 113: 1369-1377 (1997).

MacRobbie EA. Signal transduction and ion channels in guard cells. Philos. Trans. R. Soc. Lond. B. Biol. Sci. 353: 1475-1488 (1998).

Madlung A, Masuelli RW, Watson B, Reynolds SH, Davison J, Comai L. Remodeling of DNA methylation and phenotypic and transcriptional changes in synthetic Arabidopsis allotetraploids. Plant Physiol. 129: 733-746 (2002).

Madlung A, Tyagi AP, Watson B, Jiang H, Kagochi T, Doerge RW, Martienssen R, Comai L. Genomic changes in synthetic Arabidopsis polyploids. Plant J. 41: 221-230 (2005).

Madson M, Dunand C, Li X, Verma R, Vanzin GF, Caplan J, Shoue DA, Carpita NC, Reiter WD. The MUR3 Gene of Arabidopsis encodes a xyloglucan galactosyltransferase that is evolutionarily related to animal exostosins. Plant Cell 15: 1662-1670 (2003).

Maeda H, Sage TL, Isaac G, Welti R, Dellapenna D. Tocopherols modulate extraplastidic polyunsaturated fatty acid metabolism in Arabidopsis at low temperature. Plant Cell 20: 452-470 (2008).

Maeda H, Song W, Sage TL, Dellapenna D. Tocopherols play a crucial role in low-temperature adaptation and phloem loading in Arabidopsis. Plant Cell 18: 2710-2732 (2006).

Maeda K, Finnie C, OStergaard O, Svensson B. Identification, cloning and characterization of two thioredoxin h isoforms, HvTrxh1 and HvTrxh2, from the barley seed proteome. Eur. J. Biochem. 270: 2633-2643 (2003).

Maes L, Inze D, Goossens A. Functional specialization of the TRANSPARENT TESTA GLABRA1 network allows differential hormonal control of laminal and marginal trichome initiation in Arabidopsis rosette leaves. Plant Physiol. 148: 1453-1464 (2008).

Maggio A, Hasegawa PM, Bressan RA, Consiglio MF, Joly RJ. Unravelling the functional relationship between root anatomy and stress tolerance. Aust. J. Plant Physiol. 28: 999-1004 (2001).

Maggio A, Zhu JK, Hasegawa PM, Bressan RA. Osmogenetics: Aristotle to Arabidopsis. Plant Cell 18: 1542-1557 (2006).

Maggio C, Barbante A, Ferro F, Frigerio L, Pedrazzini E. Intracellular sorting of the tail-anchored protein cytochrome b5 in plants: a comparative study using different isoforms from rabbit and Arabidopsis. J. Exp. Bot. 58: 1365-1379 (2007).

Magidin M, Pittman JK, Hirschi KD, Bartel B. ILR2, a novel gene regulating IAA conjugate sensitivity and metal transport in Arabidopsis thaliana. Plant J. 35: 523-534 (2003).

Magliano TM, Botto JF, Godoy AV, Symonds VV, Lloyd AM, Casal JJ. New Arabidopsis recombinant inbred lines (Landsberg erecta x Nossen) reveal natural variation in phytochrome-mediated responses. Plant Physiol. 138: 1126-1135 (2005).

Magnard JL, Lehouque G, Massonneau A, Frangne N, Heckel T, Gutierrez-Marcos JF, Perez P, Dumas C, Rogowsky PM. ZmEBE genes show a novel, continuous expression pattern in the central cell before fertilization and in specific domains of the resulting endosperm after fertilization. Plant Mol. Biol. 53: 821-836 (2003).

Magnard JL, Yang M, Chen YC, Leary M, McCormick S. The Arabidopsis gene tardy asynchronous meiosis is required for the normal pace and synchrony of cell division during male meiosis. Plant Physiol. 127: 1157-1166 (2001).

Magome H, Yamaguchi S, Hanada A, Kamiya Y, Oda K. DDF1 transcriptional activator upregulates expression of a Gibberellin deactivating gene, GA2ox7, under high-salinity stress in Arabidopsis. Plant J. 56: 613-626 (2008).

Magome H, Yamaguchi S, Hanada A, Kamiya Y, Oda K. dwarf and delayed-flowering 1, a novel Arabidopsis mutant deficient in gibberellin biosynthesis because of overexpression of a putative AP2 transcription factor. Plant J. 37: 720-729 (2004).

Magyar Z, De Veylder L, Atanassova A, Bako L, Inze D, Bogre L. The role of the Arabidopsis E2FB transcription factor in regulating auxin-dependent cell division. Plant Cell 17: 2527-2541 (2005).

Mahalingam R, Shah N, Scrymgeour A, Fedoroff N. Temporal evolution of the Arabidopsis oxidative stress response. Plant Mol. Biol. 57: 709-730 (2005).

Mahe L, Combes MC, Lashermes P. Comparison between a coffee single copy chromosomal region and Arabidopsis duplicated counterparts evidenced high level synteny between the coffee genome and the ancestral Arabidopsis genome. Plant Mol. Biol. 64: 699-711 (2007).

Mahesh V, Million-Rousseau R, Ullmann P, Chabrillange N, Bustamante J, Mondolot L, Morant M, Noirot M, Hamon S, de Kochko A, Werck-Reichhart D, Campa C. Functional characterization of two p-coumaroyl ester 3'-hydroxylase genes from coffee tree: evidence of a candidate for chlorogenic acid biosynthesis. Plant Mol. Biol. 64: 145-159 (2007).

Mahfouz MM, Kim S, Delauney AJ, Verma DP. Arabidopsis TARGET OF RAPAMYCIN interacts with RAPTOR, which regulates the activity of S6 kinase in response to osmotic stress signals. Plant Cell 18: 477-490 (2006).

Mahler H, Wuennenberg P, Linder M, Przybyla D, Zoerb C, Landgraf F, Forreiter C. Singlet oxygen affects the activity of the thylakoid ATP synthase and has a strong impact on its gamma subunit. Planta 225: 1073-1083 (2007).

Maillet G, White CI, Gallego ME. Telomere-length regulation in inter-ecotype crosses of Arabidopsis. Plant Mol. Biol. 62: 859-866 (2006).

Maiti MK, Krishnasamy S, Owen HA, Makaroff CA. Molecular characterization of glyoxalase II from Arabidopsis thaliana. Plant Mol. Biol. 35: 471-481 (1997).

Maiwald D, Dietzmann A, Jahns P, Pesaresi P, Joliot P, Joliot A, Levin JZ, Salamini F, Leister D. Knock-out of the genes coding for the Rieske protein and the ATP-synthase delta-subunit of Arabidopsis. Effects on photosynthesis, thylakoid protein composition, and nuclear chloroplast gene expression. Plant Physiol. 133: 191-202 (2003).

Maizel A, Weigel D. Temporally and spatially controlled induction of gene expression in Arabidopsis thaliana. Plant J. 38: 164-171 (2004).

Majewski P, Woloszynska M, Janska H. Developmentally early and late onset of Rps10 silencing in Arabidopsis thaliana: genetic and environmental regulation. J. Exp. Bot. 60: 1163-1178 (2009).

Makarevitch I, Somers DA. Association of Arabidopsis topoisomerase IIA cleavage sites with functional genomic elements and T-DNA loci. Plant J. 48: 697-709 (2006).

Makino S, Matsushika A, Kojima M, Yamashino T, Mizuno T. The APRR1/TOC1 quintet implicated in circadian rhythms of Arabidopsis thaliana: I. Characterization with APRR1-overexpressing plants. Plant Cell Physiol. 43: 58-69 (2002).

Malamy JE. Intrinsic and environmental response pathways that regulate root system architecture. Plant Cell Environ. 28: 67-77 (2005).

Malamy JE, Ryan KS. Environmental regulation of lateral root initiation in Arabidopsis. Plant Physiol. 127: 899-909 (2001).

Malatrasi M, Close TJ, Marmiroli N. Identification and mapping of a putative stress response regulator gene in barley. Plant Mol. Biol. 50: 143-152 (2002).

Malatrasi M, Corradi M, Svensson JT, Close TJ, Gulli M, Marmiroli N. A branched-chain amino acid aminotransferase gene isolated from Hordeum vulgare is differentially regulated by drought stress. Theor. Appl. Genet. 113: 965-976 (2006).

Malcomber ST, Kellogg EA. SEPALLATA gene diversification: brave new whorls. Trends Plant Sci. 10: 427-435 (2005).

Malehorn DE, Borgmeyer JR, Smith CE, Shah DM. Characterization and expression of an antifungal zeamatin-like protein (Zlp) gene from Zea mays. Plant Physiol. 106: 1471-1481 (1994).

Malenica N, Abas L, Benjamins R, Kitakura S, Sigmund HF, Jun KS, Hauser MT, Friml J, Luschnig C. MODULATOR OF PIN genes control steady-state levels of Arabidopsis PIN proteins. Plant J. 51: 537-550 (2007).

Mallory AC, Bartel DP, Bartel B. MicroRNA-directed regulation of Arabidopsis AUXIN RESPONSE FACTOR17 is essential for proper development and modulates expression of early auxin response genes. Plant Cell 17: 1360-1375 (2005).

Mallory AC, Elmayan T, Vaucheret H. MicroRNA maturation and action-the expanding roles of ARGONAUTEs. Curr. Opin. Plant Biol. 11: 560-566 (2008).

Malone S, Chen ZH, Bahrami AR, Walker RP, Gray JE, Leegood RC. Phosphoenolpyruvate carboxykinase in Arabidopsis: changes in gene expression, protein and activity during vegetative and reproductive development. Plant Cell Physiol. 48: 441-450 (2007).

Maloof JN, Borevitz JO, Dabi T, Lutes J, Nehring RB, Redfern JL, Trainer GT, Wilson JM, Asami T, Berry CC, Weigel D, Chory J. Natural variation in light sensitivity of Arabidopsis. Nat. Genet. 29: 441-446 (2001).

Manabe T, Hasumi A, Sugiyama M, Yamazaki M, Saito K. Alliinase [S-alk(en)yl-L-cysteine sulfoxide lyase] from Allium tuberosum (Chinese chive). Purification, localization, cDNA cloning and heterologous functional expression. Eur. J. Biochem. 257: 21-30 (1998).

Manabe Y, Tinker N, Colville A, Miki B. CSR1, the sole target of imidazolinone herbicide in Arabidopsis thaliana. Plant Cell Physiol. 48: 1340-1358 (2007).

Manavella PA, Arce AL, Dezar CA, Bitton F, Renou JP, Crespi M, Chan RL. Cross-talk between ethylene and drought signalling pathways is mediated by the sunflower Hahb-4 transcription factor. Plant J. 48: 125-137 (2006).

Manavella PA, Dezar CA, Ariel FD, Drincovich MF, Chan RL. The sunflower HD-Zip transcription factor HAHB4 is up-regulated in darkness, reducing the transcription of photosynthesis-related genes. J. Exp. Bot. 59: 3143-3155 (2008).

Manavella PA, Dezar CA, Bonaventure G, Baldwin IT, Chan RL. HAHB4, a sunflower HD-Zip protein, integrates signals from the jasmonic acid and ethylene pathways during wounding and biotic stress responses. Plant J. 56: 376-388 (2008).

Mandaokar A, Browse J. MYB108 acts together with MYB24 to regulate jasmonate-mediated stamen maturation in Arabidopsis. Plant Physiol. 149: 851-862 (2009).

Mandaokar A, Kumar VD, Amway M, Browse J. Microarray and differential display identify genes involved in jasmonate-dependent anther development. Plant Mol. Biol. 52: 775-786 (2003).

Mandaokar A, Thines B, Shin B, Markus Lange B, Choi G, Koo YJ, Yoo YJ, Choi YD, Choi G, Browse J. Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling. Plant J. 46: 984-1008 (2006).

Mane SP, Vasquez-Robinet C, Sioson AA, Heath LS, Grene R. Early PLDalpha-mediated events in response to progressive drought stress in Arabidopsis: a transcriptome analysis. J. Exp. Bot. 58: 241-252 (2007).

Manfield IW, Orfila C, McCartney L, Harholt J, Bernal AJ, Scheller HV, Gilmartin PM, Mikkelsen JD, Paul Knox J, Willats WG. Novel cell wall architecture of isoxaben-habituated Arabidopsis suspension-cultured cells: global transcript profiling and cellular analysis. Plant J. 40: 260-275 (2004).

Manfre AJ, Lahatte GA, Climer CR, Marcotte WR Jr. Seed dehydration and the establishment of desiccation tolerance during seed maturation is altered in the Arabidopsis thaliana mutant atem6-1. Plant Cell Physiol. 50: 243-253 (2009).

Manfre AJ, Lanni LM, Marcotte WR Jr. The Arabidopsis group 1 LATE EMBRYOGENESIS ABUNDANT protein ATEM6 is required for normal seed development. Plant Physiol. 140: 140-149 (2006).

Mani S, Van de Cotte B, Van Montagu M, Verbruggen N. Altered levels of proline dehydrogenase cause hypersensitivity to proline and its analogs in Arabidopsis. Plant Physiol. 128: 73-83 (2002).

Manners JM, Penninckx IA, Vermaere K, Kazan K, Brown RL, Morgan A, Maclean DJ, Curtis MD, Cammue BP, Broekaert WF. The promoter of the plant defensin gene PDF1.2 from Arabidopsis is systemically activated by fungal pathogens and responds to methyl jasmonate but not to salicylic acid. Plant Mol. Biol. 38: 1071-1080 (1998).

Mano J, Belles-Boix E, Babiychuk E, Inze D, Torii Y, Hiraoka E, Takimoto K, Slooten L, Asada K, Kushnir S. Protection against photooxidative injury of tobacco leaves by 2-alkenal reductase. Detoxication of lipid peroxide-derived reactive carbonyls. Plant Physiol. 139: 1773-1783 (2005).

Mano S, Hayashi M, Kondo M, Nishimura M. Hydroxypyruvate reductase with a carboxy-terminal targeting signal to microbodies is expressed in Arabidopsis. Plant Cell Physiol. 38: 449-455 (1997).

Mano S, Hayashi M, Nishimura M. Light regulates alternative splicing of hydroxypyruvate reductase in pumpkin. Plant J. 17: 309-320 (1999).

Mano S, Nakamori C, Kondo M, Hayashi M, Nishimura M. An Arabidopsis dynamin-related protein, DRP3A, controls both peroxisomal and mitochondrial division. Plant J. 38: 487-498 (2004).

Mano S, Nakamori C, Nito K, Kondo M, Nishimura M. The Arabidopsis pex12 and pex13 mutants are defective in both PTS1- and PTS2-dependent protein transport to peroxisomes. Plant J. 47: 604-618 (2006).

Mansfield JW. Biophoton distress flares signal the onset of the hypersensitive reaction. Trends Plant Sci. 10: 307-309 (2005).

Mant A, Kieselbach T, Schroder WP, Robinson C. Characterisation of an Arabidopsis thaliana cDNA encoding a novel thylakoid lumen protein imported by the delta pH-dependent pathway. Planta 207: 624-627 (1999).

Mantegazza R, Moller M, Jill Harrison C, Fior S, De Luca C, Spada A. Anisocotyly and meristem initiation in an unorthodox plant, Streptocarpus rexii (Gesneriaceae). Planta 225: 653-663 (2007).

Mantelin S, Desbrosses G, Larcher M, Tranbarger TJ, Cleyet-Marel JC, Touraine B. Nitrate-dependent control of root architecture and N nutrition are altered by a plant growth-promoting Phyllobacterium sp. Planta 223: 591-603 (2006).

Manzano C, Abraham Z, Lopez-Torrejon G, Del Pozo JC. Identification of ubiquitinated proteins in Arabidopsis. Plant Mol. Biol. 68: 145-158 (2008).

Manzano D, Busquets A, Closa M, Hoyerova K, Schaller H, Kaminek M, Arro M, Ferrer A. Overexpression of farnesyl diphosphate synthase in Arabidopsis mitochondria triggers light-dependent lesion formation and alters cytokinin homeostasis. Plant Mol. Biol. 61: 195-213 (2006).

Manzano D, Fernandez-Busquets X, Schaller H, Gonzalez V, Boronat A, Arro M, Ferrer A. The metabolic imbalance underlying lesion formation in Arabidopsis thaliana overexpressing farnesyl diphosphate synthase (isoform 1S) leads to oxidative stress and is triggered by the developmental decline of endogenous HMGR activity. Planta 219: 982-992 (2004).

Mao C, Wang S, Jia Q, Wu P. OsEIL1, a rice homolog of the Arabidopsis EIN3 regulates the ethylene response as a positive component. Plant Mol. Biol. 61: 141-152 (2006).

Mao G, Chan J, Calder G, Doonan JH, Lloyd CW. Modulated targeting of GFP-AtMAP65-1 to central spindle microtubules during division. Plant J. 43: 469-478 (2005).

Mao L, Begum D, Goff SA, Wing RA. Sequence and analysis of the tomato jointless locus. Plant Physiol. 126: 1331-1340 (2001).

Mao T, Jin L, Li H, Liu B, Yuan M. Two microtubule-associated proteins of the Arabidopsis MAP65 family function differently on microtubules. Plant Physiol. 138: 654-662 (2005).

Maple J, Aldridge C, Moller SG. Plastid division is mediated by combinatorial assembly of plastid division proteins. Plant J. 43: 811-823 (2005).

Marais S, Thomson JA, Farrant JM, Mundree SG. XvVHA-c''1 - a novel stress-responsive V-ATPase subunit c'' homologue isolated from the resurrection plant Xerophyta viscosa. Physiol. Plant. 122: 54-61 (2004).

Maraschin Fdos S, Memelink J, Offringa R. Auxin-induced, SCF(TIR1)-mediated poly-ubiquitination marks AUX/IAA proteins for degradation. Plant J. 59: 100-109 (2009).

March-Diaz R, Garcia-Dominguez M, Lozano-Juste J, Leon J, Florencio FJ, Reyes JC. Histone H2A.Z and homologues of components of the SWR1 complex are required to control immunity in Arabidopsis. Plant J. 53: 475-487 (2008).

Marchant A, Bennett MJ. The Arabidopsis AUX1 gene: a model system to study mRNA processing in plants. Plant Mol. Biol. 36: 463-471 (1998).

Marchant A, Bhalerao R, Casimiro I, Eklof J, Casero PJ, Bennett M, Sandberg G. AUX1 promotes lateral root formation by facilitating indole-3-acetic acid distribution between sink and source tissues in the Arabidopsis seedling. Plant Cell 14: 589-597 (2002).

Mare C, Mazzucotelli E, Crosatti C, Francia E, Stanca AM, Cattivelli L. Hv-WRKY38: a new transcription factor involved in cold- and drought-response in barley. Plant Mol. Biol. 55: 399-416 (2004).

Marechal E, Hiratsuka K, Delgado J, Nairn A, Qin J, Chait BT, Chua NH. Modulation of GT-1 DNA-binding activity by calcium-dependent phosphorylation. Plant Mol. Biol. 40: 373-386 (1999).

Marella HH, Quatrano RS. The B2 domain of VIVIPAROUS1 is bi-functional and regulates nuclear localization and transactivation. Planta 225: 863-872 (2007).

Marella HH, Sakata Y, Quatrano RS. Characterization and functional analysis of ABSCISIC ACID INSENSITIVE3-like genes from Physcomitrella patens. Plant J. 46: 1032-1044 (2006).

Margis R, Margis-Pinheiro M. Phytocalpains: orthologous calcium-dependent cysteine proteinases. Trends Plant Sci. 8: 58-62 (2003).

Marian CO, Bordoli SJ, Goltz M, Santarella RA, Jackson LP, Danilevskaya O, Beckstette M, Meeley R, Bass HW. The maize Single myb histone 1 gene, Smh1, belongs to a novel gene family and encodes a protein that binds telomere DNA repeats in vitro. Plant Physiol. 133: 1336-1350 (2003).

Mariaux JB, Bockel C, Salamini F, Bartels D. Desiccation- and abscisic acid-responsive genes encoding major intrinsic proteins (MIPs) from the resurrection plant Craterostigma plantagineum. Plant Mol. Biol. 38: 1089-1099 (1998).

Marillia EF, Giblin EM, Covello PS, Taylor DC. A desaturase-like protein from white spruce is a Delta(9) desaturase. FEBS Lett. 526: 49-52 (2002).

Marillia EF, Micallef BJ, Micallef M, Weninger A, Pedersen KK, Zou J, Taylor DC. Biochemical and physiological studies of Arabidopsis thaliana transgenic lines with repressed expression of the mitochondrial pyruvate dehydrogenase kinase. J. Exp. Bot. 54: 259-270 (2003).

Marinelli B, Gomarasca S, Soave C. A pleiotropic Arabidopsis thaliana mutant with inverted root chirality. Planta 202: 196-205 (1997).

Marion J, Bach L, Bellec Y, Meyer C, Gissot L, Faure JD. Systematic analysis of protein subcellular localization and interaction using high-throughput transient transformation of Arabidopsis seedlings. Plant J. 56: 169-179 (2008).

Marita JM, Ralph J, Hatfield RD, Chapple C. NMR characterization of lignins in Arabidopsis altered in the activity of ferulate 5-hydroxylase. Proc. Natl. Acad. Sci. U.S.A. 96: 12328-12332 (1999).

Marks MD, Gilding E, Wenger JP. Genetic interaction between glabra3-shapeshifter and siamese in Arabidopsis thaliana converts trichome precursors into cells with meristematic activity. Plant J. 52: 352-361 (2007).

Marmagne A, Vinauger-Douard M, Monachello D, de Longevialle AF, Charon C, Allot M, Rappaport F, Wollman FA, Barbier-Brygoo H, Ephritikhine G. Two members of the Arabidopsis CLC (chloride channel) family, AtCLCe and AtCLCf, are associated with thylakoid and Golgi membranes, respectively. J. Exp. Bot. 58: 3385-3393 (2007).

Marquardt S, Boss P, Hadfield J, Dean C. Additional targets of the Arabidopsis autonomous pathway members, FCA and FY. J. Exp. Bot. 57: 3379-3386 (2006).

Marques JP, Schattat MH, Hause G, Dudeck I, Klosgen RB. In vivo transport of folded EGFP by the {Delta}pH/TAT-dependent pathway in chloroplasts of Arabidopsis thaliana. J. Exp. Bot. 55: 1697-1706 (2004).

Marri L, Sparla F, Pupillo P, Trost P. Co-ordinated gene expression of photosynthetic glyceraldehyde-3-phosphate dehydrogenase, phosphoribulokinase, and CP12 in Arabidopsis thaliana. J. Exp. Bot. 56: 73-80 (2005).

Marri L, Trost P, Pupillo P, Sparla F. Reconstitution and properties of the recombinant glyceraldehyde-3-phosphate dehydrogenase/CP12/phosphoribulokinase supramolecular complex of Arabidopsis. Plant Physiol. 139: 1433-1443 (2005).

Marrocco K, Lecureuil A, Nicolas P, Guerche P. The Arabidopsis SKP1-like genes present a spectrum of expression profiles. Plant Mol. Biol. 52: 715-727 (2003).

Marrocco K, Zhou Y, Bury E, Dieterle M, Funk M, Genschik P, Krenz M, Stolpe T, Kretsch T. Functional analysis of EID1, an F-box protein involved in phytochrome A-dependent light signal transduction. Plant J. 45: 423-438 (2006).

Marrs KA, Alfenito MR, Lloyd AM, Walbot V. A glutathione S-transferase involved in vacuolar transfer encoded by the maize gene Bronze-2. Nature 375: 397-400 (1995).

Marsch-Martinez N, Greco R, Becker JD, Dixit S, Bergervoet JH, Karaba A, de Folter S, Pereira A. BOLITA, an Arabidopsis AP2/ERF-like transcription factor that affects cell expansion and proliferation/differentiation pathways. Plant Mol. Biol. 62: 825-843 (2006).

Marsch-Martinez N, Greco R, Van Arkel G, Herrera-Estrella L, Pereira A. Activation tagging using the en-I maize transposon system in Arabidopsis. Plant Physiol. 129: 1544-1556 (2002).

Marshall DM, Muhaidat R, Brown NJ, Liu Z, Stanley S, Griffiths H, Sage RF, Hibberd JM. Cleome, a genus closely related to Arabidopsis, contains species spanning a developmental progression from C(3) to C(4) photosynthesis. Plant J. 51: 886-896 (2007).

Marsolais F, Boyd J, Paredes Y, Schinas AM, Garcia M, Elzein S, Varin L. Molecular and biochemical characterization of two brassinosteroid sulfotransferases from Arabidopsis, AtST4a (At2g14920) and AtST1 (At2g03760). Planta 225: 1233-1244 (2007).

Marten H, Hedrich R, Roelfsema MR. Blue light inhibits guard cell plasma membrane anion channels in a phototropin-dependent manner. Plant J. 50: 29-39 (2007).

Marten I, Gaymard F, Lemaillet G, Thibaud JB, Sentenac H, Hedrich R. Functional expression of the plant K+ channel KAT1 in insect cells. FEBS Lett. 380: 229-232 (1996).

Martí C, Orzaez D, Ellul P, Moreno V, Carbonell J, Granell A. Silencing of DELLA induces facultative parthenocarpy in tomato fruits. Plant J. 52: 865-876 (2007).

Martin AC, Del Pozo JC, Iglesias J, Rubio V, Solano R, De La Pena A, Leyva A, Paz-Ares J. Influence of cytokinins on the expression of phosphate starvation responsive genes in Arabidopsis. Plant J. 24: 559-567 (2000).

Martin C, Paz-Ares J. MYB transcription factors in plants. Trends Genet. 13: 67-73 (1997).

Martin DN, Proebsting WM, Parks TD, Dougherty WG, Lange T, Lewis MJ, Gaskin P, Hedden P. Feed-back regulation of gibberellin biosynthesis and gene expression in Pisum sativum L. Planta 200: 159-166 (1996).

Martin JR, Harwood JH, McCaffery M, Fernandez DE, Cline K. Localization and integration of thylakoid protein translocase subunit cpTatC. Plant J. 58: 831-842 (2009).

Martin MN, Saladores PH, Lambert E, Hudson AO, Leustek T. Localization of members of the gamma-glutamyl transpeptidase family identifies sites of glutathione and glutathione S-conjugate hydrolysis. Plant Physiol. 144: 1715-1732 (2007).

Martin T, Oswald O, Graham IA. Arabidopsis seedling growth, storage lipid mobilization, and photosynthetic gene expression are regulated by carbon:nitrogen availability. Plant Physiol. 128: 472-481 (2002).

Martin T, Sharma R, Sippel C, Waegemann K, Soll J, Vothknecht UC. A protein kinase family in Arabidopsis phosphorylates chloroplast precursor proteins. J. Biol. Chem. 281: 40216-40223 (2006).

Martín Y, Navarro FJ, Siverio JM. Functional characterization of the Arabidopsis thaliana nitrate transporter CHL1 in the yeast Hansenula polymorpha. Plant Mol. Biol. 68: 215-224 (2008).

Martin-Tryon EL, Harmer SL. XAP5 CIRCADIAN TIMEKEEPER coordinates light signals for proper timing of photomorphogenesis and the circadian clock in Arabidopsis. Plant Cell 20: 1244-1259 (2008).

Martin-Tryon EL, Kreps JA, Harmer SL. GIGANTEA acts in blue light signaling and has biochemically separable roles in circadian clock and flowering time regulation. Plant Physiol. 143: 473-486 (2007).

Martinez C, Pons E, Prats G, Leon J. Salicylic acid regulates flowering time and links defence responses and reproductive development. Plant J. 37: 209-217 (2004).

Martinez DE, Costa ML, Gomez FM, Otegui MS, Guiamet JJ. "Senescence-associated vacuoles" are involved in the degradation of chloroplast proteins in tobacco leaves. Plant J. 56: 196-206 (2008).

Martinez IM, Chrispeels MJ. Genomic analysis of the unfolded protein response in Arabidopsis shows its connection to important cellular processes. Plant Cell 15: 561-576 (2003).

Martinoia E, Klein M, Geisler M, Bovet L, Forestier C, Kolukisaoglu U, Muller-Rober B, Schulz B. Multifunctionality of plant ABC transporters--more than just detoxifiers. Planta 214: 345-355 (2002).

Martinsuo P, Pursiheimo S, Aro EM, Rintamaki E. Dithiol oxidant and disulfide reductant dynamically regulate the phosphorylation of light-harvesting complex II proteins in thylakoid membranes. Plant Physiol. 133: 37-46 (2003).

Martre P, Morillon R, Barrieu F, North GB, Nobel PS, Chrispeels MJ. Plasma membrane aquaporins play a significant role during recovery from water deficit. Plant Physiol. 130: 2101-2110 (2002).

Marty I, Douat C, Tichit L, Jungsup K, Leustek T, Albagnac G. The cystathionine-gamma-synthase gene involved in methionine biosynthesis is highly expressed and auxin-repressed during wild strawberry (Fragaria vesca L.) fruit ripening. Theor. Appl. Genet. 100: 1129-1136 (2000).

Maruyama K, Sakuma Y, Kasuga M, Ito Y, Seki M, Goda H, Shimada Y, Yoshida S, Shinozaki K, Yamaguchi-Shinozaki K. Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems. Plant J. 38: 982-993 (2004).

Maruyama-Nakashita A, Inoue E, Watanabe-Takahashi A, Yamaya T, Takahashi H. Transcriptome profiling of sulfur-responsive genes in Arabidopsis reveals global effects of sulfur nutrition on multiple metabolic pathways. Plant Physiol. 132: 597-605 (2003).

Maruyama-Nakashita A, Nakamura Y, Tohge T, Saito K, Takahashi H. Arabidopsis SLIM1 is a central transcriptional regulator of plant sulfur response and metabolism. Plant Cell 18: 3235-3251 (2006).

Maruyama-Nakashita A, Nakamura Y, Watanabe-Takahashi A, Inoue E, Yamaya T, Takahashi H. Identification of a novel cis-acting element conferring sulfur deficiency response in Arabidopsis roots. Plant J. 42: 305-314 (2005).

Maruyama-Nakashita A, Nakamura Y, Yamaya T, Takahashi H. Regulation of high-affinity sulphate transporters in plants: towards systematic analysis of sulphur signalling and regulation. J. Exp. Bot. 55: 1843-1849 (2004).

Maruyama-Nakashita A, Nakamura Y, Yamaya T, Takahashi H. A novel regulatory pathway of sulfate uptake in Arabidopsis roots: implication of CRE1/WOL/AHK4-mediated cytokinin-dependent regulation. Plant J. 38: 779-789 (2004).

Mas P, Alabadi D, Yanovsky MJ, Oyama T, Kay SA. Dual role of TOC1 in the control of circadian and photomorphogenic responses in Arabidopsis. Plant Cell 15: 223-236 (2003).

Mas-Droux C, Curien G, Robert-Genthon M, Laurencin M, Ferrer JL, Dumas R. A novel organization of ACT domains in allosteric enzymes revealed by the crystal structure of Arabidopsis aspartate kinase. Plant Cell 18: 1681-1692 (2006).

Masaki T, Tsukagoshi H, Mitsui N, Nishii T, Hattori T, Morikami A, Nakamura K. Activation tagging of a gene for a protein with novel class of CCT-domain activates expression of a subset of sugar-inducible genes in Arabidopsis thaliana. Plant J. 43: 142-152 (2005).

Masclaux-Daubresse C, Purdy S, Lemaitre T, Pourtau N, Taconnat L, Renou JP, Wingler A. Genetic variation suggests interaction between cold acclimation and metabolic regulation of leaf senescence. Plant Physiol. 143: 434-446 (2007).

Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A. Glutamine synthetase/glutamate synthase pathway and glutamate dehydrogenase play distinct roles for sink/source nitrogen cycle in tobacco (Nicotiana tabacum L.). Plant Physiol. 140: 444-456 (2006).

Masclaux-Daubresse C, Valadier MH, Carrayol E, Reisdorf-Cren M, Hirel B. Diurnal changes in the expression of glutamate dehydrogenase and nitrate reductase are involved in the C/N balance of tobacco source leaves. Plant Cell Environ. 25: 1451-1462 (2002).

Maser P, Eckelman B, Vaidyanathan R, Horie T, Fairbairn DJ, Kubo M, Yamagami M, Yamaguchi K, Nishimura M, Uozumi N, Robertson W, Sussman MR, Schroeder JI. Altered shoot/root Na+ distribution and bifurcating salt sensitivity in Arabidopsis by genetic disruption of the Na+ transporter AtHKTI1. FEBS Lett. 531: 157-161 (2002).

Maser P, Thomine S, Schroeder JI, Ward JM, Hirschi K, Sze H, Talke IN, Amtmann A, Maathuis FJ, Sanders D, Harper JF, Tchieu J, Gribskov M, Persans MW, Salt DE, Kim SA, Guerinot ML. Phylogenetic relationships within cation transporter families of Arabidopsis. Plant Physiol. 126: 1646-1667 (2001).

Masle J, Gilmore SR, Farquhar GD. The ERECTA gene regulates plant transpiration efficiency in Arabidopsis. Nature 436: 866-870 (2005).

Mason MG, Li J, Mathews DE, Kieber JJ, Schaller GE. Type-B response regulators display overlapping expression patterns in Arabidopsis. Plant Physiol. 135: 927-937 (2004).

Mason MG, Mathews DE, Argyros DA, Maxwell BB, Kieber JJ, Alonso JM, Ecker JR, Schaller GE. Multiple type-B response regulators mediate cytokinin signal transduction in Arabidopsis. Plant Cell 17: 3007-3018 (2005).

Massa GD, Gilroy S. Touch modulates gravity sensing to regulate the growth of primary roots of Arabidopsis thaliana. Plant J. 33: 435-445 (2003).

Masson JE, King PJ, Paszkowski J. Mutants of Arabidopsis thaliana hypersensitive to DNA-damaging treatments. Genetics 146: 401-407 (1997).

Mastrangelo AM, Belloni S, Barilli S, Ruperti B, Di Fonzo N, Stanca AM, Cattivelli L. Low temperature promotes intron retention in two e-cor genes of durum wheat. Planta 221: 705-715 (2005).

Masubelele NH, Dewitte W, Menges M, Maughan S, Collins C, Huntley R, Nieuwland J, Scofield S, Murray JA. D-type cyclins activate division in the root apex to promote seed germination in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A. 102: 15694-15699 (2005).

Masuda D, Ishida M, Yamaguchi K, Yamaguchi I, Kimura M, Nishiuchi T. Phytotoxic effects of trichothecenes on the growth and morphology of Arabidopsis thaliana. J. Exp. Bot. 58: 1617-1626 (2007).

Masuda HP, Ramos GB, de Almeida-Engler J, Cabral LM, Coqueiro VM, Macrini CM, Ferreira PC, Hemerly AS. Genome based identification and analysis of the pre-replicative complex of Arabidopsis thaliana. FEBS Lett. 574: 192-202 (2004).

Masuda S, Ikeda R, Masuda T, Hashimoto H, Tsuchiya T, Kojima H, Nomata J, Fujita Y, Mimuro M, Ohta H, Takamiya K. Prolamellar bodies formed by cyanobacterial protochlorophyllide oxidoreductase in Arabidopsis. Plant J. 58: 952-960 (2009).

Masuda S, Mizusawa K, Narisawa T, Tozawa Y, Ohta H, Takamiya K. The bacterial stringent response, conserved in chloroplasts, controls plant fertilization. Plant Cell Physiol. 49: 135-141 (2008).

Masuda T, Suzuki T, Shimada H, Ohta H, Takamiya K. Subcellular localization of two types of ferrochelatase in cucumber. Planta 217: 602-609 (2003).

Matakiadis T, Alboresi A, Jikumaru Y, Tatematsu K, Pichon O, Renou JP, Kamiya Y, Nambara E, Truong HN. The Arabidopsis abscisic acid catabolic gene CYP707A2 plays a key role in nitrate control of seed dormancy. Plant Physiol. 149: 949-960 (2009).

Mateo A, Funck D, Muhlenbock P, Kular B, Mullineaux PM, Karpinski S. Controlled levels of salicylic acid are required for optimal photosynthesis and redox homeostasis. J. Exp. Bot. 57: 1795-1807 (2006).

Mateo A, Muhlenbock P, Rusterucci C, Chang CC, Miszalski Z, Karpinska B, Parker JE, Mullineaux PM, Karpinski S. LESION SIMULATING DISEASE 1 is required for acclimation to conditions that promote excess excitation energy. Plant Physiol. 136: 2818-2830 (2004).

Matheson LA, Hanton SL, Rossi M, Latijnhouwers M, Stefano G, Renna L, Brandizzi F. Multiple roles of ADP-ribosylation factor 1 in plant cells include spatially regulated recruitment of coatomer and elements of the Golgi matrix. Plant Physiol. 143: 1615-1627 (2007).

Mathieu O, Jasencakova Z, Vaillant I, Gendrel AV, Colot V, Schubert I, Tourmente S. Changes in 5S rDNA chromatin organization and transcription during heterochromatin establishment in Arabidopsis. Plant Cell 15: 2929-2939 (2003).

Mathilde G, Ghislaine G, Daniel V, Georges P. The Arabidopsis MEI1 gene encodes a protein with five BRCT domains that is involved in meiosis-specific DNA repair events independent of SPO11-induced DSBs. Plant J. 35: 465-475 (2003).

Mathur J, Chua NH. Microtubule stabilization leads to growth reorientation in Arabidopsis trichomes. Plant Cell 12: 465-478 (2000).

Mathur J, Mathur N, Hulskamp M. Simultaneous visualization of peroxisomes and cytoskeletal elements reveals actin and not microtubule-based peroxisome motility in plants. Plant Physiol. 128: 1031-1045 (2002).

Mathur J, Mathur N, Kernebeck B, Hulskamp M. Mutations in actin-related proteins 2 and 3 affect cell shape development in Arabidopsis. Plant Cell 15: 1632-1645 (2003).

Matsubara K, Yamanouchi U, Wang ZX, Minobe Y, Izawa T, Yano M. Ehd2, a rice ortholog of the maize ID1 gene, promotes flowering by upregulating Ehd1. Plant Physiol. 148: 1425-1435 (2008).

Matsubara S, Gilmore AM, Osmond CB. Diurnal and acclimatory responses of violaxanthin and lutein epoxide in the Australian mistletoe Amyema miquelii. Aust. J. Plant Physiol. 28: 793-800 (2001).

Matsubara S, Morosinotto T, Bassi R, Christian AL, Fischer-Schliebs E, Luttge U, Orthen B, Franco AC, Scarano FR, Forster B, Pogson BJ, Osmond CB. Occurrence of the lutein-epoxide cycle in mistletoes of the Loranthaceae and Vi