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N Use By Plants
Nitrate Assimilation
Ammonia Assimilation
Glu, Gln, Asn, Gly, Ser
Aminotransferases
Asp, Ala, GABA
Val, Leu, Ileu, Thr, Lys
Pro, Arg, Orn
Polyamines
Non-protein AAs
Alkaloids
Sulfate Assimilation
Cys, Met, AdoMet, ACC
His, Phe, Tyr, Tryp
Secondary Products
Onium Compounds
Enzymes
Methods
Simulation
References
HORT640 - Metabolic Plant Physiology

References, Arabidopsis

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Aarts MG, Hodge R, Kalantidis K, Florack D, Wilson ZA, Mulligan BJ, Stiekema WJ, Scott R, Pereira A. The Arabidopsis MALE STERILITY 2 protein shares similarity with reductases in elongation/condensation complexes. Plant J. 12: 615-623 (1997).

Aarts MG, Keijzer CJ, Stiekema WJ, Pereira A. Molecular characterization of the CER1 gene of Arabidopsis involved in epicuticular wax biosynthesis and pollen fertility. Plant Cell 7: 2115-2127 (1995).

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Abdel-Ghany SE, Muller-Moule P, Niyogi KK, Pilon M, Shikanai T. Two P-type ATPases are required for copper delivery in Arabidopsis thaliana chloroplasts. Plant Cell 17: 1233-1251 (2005).

Abdel-Ghany SE, Ye H, Garifullina GF, Zhang L, Pilon-Smits EA, Pilon M. Iron-sulfur cluster biogenesis in chloroplasts. Involvement of the scaffold protein CpIsca. Plant Physiol. 138: 161-172 (2005).

Abdulrazzak N, Pollet B, Ehlting J, Larsen K, Asnaghi C, Ronseau S, Proux C, Erhardt M, Seltzer V, Renou JP, Ullmann P, Pauly M, Lapierre C, Werck-Reichhart D. A coumaroyl-ester-3-hydroxylase insertion mutant reveals the existence of nonredundant meta-hydroxylation pathways and essential roles for phenolic precursors in cell expansion and plant growth. Plant Physiol. 140: 30-48 (2006).

Abe H, Ohnishi J, Narusaka M, Seo S, Narusaka Y, Tsuda S, Kobayashi M. Function of jasmonate in response and tolerance of Arabidopsis to thrip feeding. Plant Cell Physiol. 49: 68-80 (2008).

Abe H, Urao T, Ito T, Seki M, Shinozaki K, Yamaguchi-Shinozaki K. Arabidopsis AtMYC2 (bHLH) and AtMYB2 (MYB) function as transcriptional activators in abscisic acid signaling. Plant Cell 15: 63-78 (2003).

Abe K, Osakabe K, Ishikawa Y, Tagiri A, Yamanouchi H, Takyuu T, Yoshioka T, Ito T, Kobayashi M, Shinozaki K, Ichikawa H, Toki S. Inefficient double-strand DNA break repair is associated with increased fasciation in Arabidopsis BRCA2 mutants. J. Exp. Bot. 60: 2751-2761 (2009).

Abe K, Osakabe K, Nakayama S, Endo M, Tagiri A, Todoriki S, Ichikawa H, Toki S. Arabidopsis RAD51C gene is important for homologous recombination in meiosis and mitosis. Plant Physiol. 139: 896-908 (2005).

Abe M, Fujiwara M, Kurotani K, Yokoi S, Shimamoto K. Identification of dynamin as an interactor of rice GIGANTEA by tandem affinity purification (TAP). Plant Cell Physiol. 49: 420-432 (2008).

Abe T, Hashimoto T. Altered microtubule dynamics by expression of modified alpha-tubulin protein causes right-handed helical growth in transgenic Arabidopsis plants. Plant J. 43: 191-204 (2005).

Abel C, Clauss M, Schaub A, Gershenzon J, Tholl D. Floral and insect-induced volatile formation in Arabidopsis lyrata ssp. petraea, a perennial, outcrossing relative of A. thaliana. Planta 230: 1-11 (2009).

Abel S, Nguyen MD, Chow W, Theologis A. ACS4, a primary indoleacetic acid-responsive gene encoding 1-aminocyclopropane-1-carboxylate synthase in Arabidopsis thaliana. Structural characterization, expression in Escherichia coli, and expression characteristics in response to auxin. J. Biol. Chem. 270: 19093-19099 (1995).

Abraham E, Rigo G, Szekely G, Nagy R, Koncz C, Szabados L. Light-dependent induction of proline biosynthesis by abscisic acid and salt stress is inhibited by brassinosteroid in Arabidopsis. Plant Mol. Biol. 51: 363-372 (2003).

Abrahams S, Lee E, Walker AR, Tanner GJ, Larkin PJ, Ashton AR. The Arabidopsis TDS4 gene encodes leucoanthocyanidin dioxygenase (LDOX) and is essential for proanthocyanidin synthesis and vacuole development. Plant J. 35: 624-636 (2003).

Abrahams S, Tanner GJ, Larkin PJ, Ashton AR. Identification and biochemical characterization of mutants in the proanthocyanidin pathway in Arabidopsis. Plant Physiol. 130: 561-576 (2002).

Abreu ME, Munne-Bosch S. Salicylic acid deficiency in NahG transgenic lines and sid2 mutants increases seed yield in the annual plant Arabidopsis thaliana. J. Exp. Bot. 60: 1261-1271 (2009).

Abu-Abied M, Golomb L, Belausov E, Huang S, Geiger B, Kam Z, Staiger CJ, Sadot E. Identification of plant cytoskeleton-interacting proteins by screening for actin stress fiber association in mammalian fibroblasts. Plant J. 48: 367-379 (2006).

Abuqamar S, Chen X, Dhawan R, Bluhm B, Salmeron J, Lam S, Dietrich RA, Mengiste T. Expression profiling and mutant analysis reveals complex regulatory networks involved in Arabidopsis response to Botrytis infection. Plant J. 48: 28-44 (2006).

Acarkan A, Rossberg M, Koch M, Schmidt R. Comparative genome analysis reveals extensive conservation of genome organisation for Arabidopsis thaliana and Capsella rubella. Plant J. 23: 55-62 (2000).

Acevedo-Hernandez GJ, Leon P, Herrera-Estrella LR. Sugar and ABA responsiveness of a minimal RBCS light-responsive unit is mediated by direct binding of ABI4. Plant J. 43: 506-519 (2005).

Achard P, Cheng H, De Grauwe L, Decat J, Schoutteten H, Moritz T, Van Der Straeten D, Peng J, Harberd NP. Integration of plant responses to environmentally activated phytohormonal signals. Science 311: 91-94 (2006).

Achard P, Vriezen WH, Van Der Straeten D, Harberd NP. Ethylene regulates Arabidopsis development via the modulation of DELLA protein growth repressor function. Plant Cell 15: 2816-2825 (2003).

Acharya BR, Raina S, Maqbool SB, Jagadeeswaran G, Mosher SL, Appel HM, Schultz JC, Klessig DF, Raina R. Overexpression of CRK13, an Arabidopsis cysteine-rich receptor-like kinase, results in enhanced resistance to Pseudomonas syringae. Plant J. 50: 488-499 (2007).

Achkor H, Diaz M, Fernandez MR, Biosca JA, Pares X, Martinez MC. Enhanced formaldehyde detoxification by overexpression of glutathione-dependent formaldehyde dehydrogenase from Arabidopsis. Plant Physiol. 132: 2248-2255 (2003).

Acosta-Garcia G, Vielle-Calzada JP. A classical arabinogalactan protein is essential for the initiation of female gametogenesis in Arabidopsis. Plant Cell 16: 2614-2628 (2004).

Adachi S, Uchimiya H, Umeda M. Expression of B2-type cyclin-dependent kinase is controlled by protein degradation in Arabidopsis thaliana. Plant Cell Physiol. 47: 1683-1686 (2006).

Adam H, Jouannic S, Morcillo F, Verdeil JL, Duval Y, Tregear JW. Determination of flower structure in Elaeis guineensis: do palms use the same homeotic genes as other species? Ann. Bot. (Lond.) 100: 1-12 (2007).

Adam H, Jouannic S, Orieux Y, Morcillo F, Richaud F, Duval Y, Tregear JW. Functional characterization of MADS box genes involved in the determination of oil palm flower structure. J. Exp. Bot. 58: 1245-1259 (2007).

Adam H, Ouellet F, Kane NA, Agharbaoui Z, Major G, Tominaga Y, Sarhan F. Overexpression of TaVRN1 in Arabidopsis promotes early flowering and alters development. Plant Cell Physiol. 48: 1192-1206 (2007).

Adam Z, Rudella A, van Wijk KJ. Recent advances in the study of Clp, FtsH and other proteases located in chloroplasts. Curr. Opin. Plant Biol. 9: 234-240 (2006).

Adam Z, Zaltsman A, Sinvany-Villalobo G, Sakamoto W. FtsH proteases in chloroplasts and cyanobacteria. Physiol. Plant. 123: 386-390 (2005).

Adamczyk BJ, Fernandez DE. MIKC* MADS domain heterodimers are required for pollen maturation and tube growth in Arabidopsis. Plant Physiol. 149: 1713-1723 (2009).

Adamczyk BJ, Lehti-Shiu MD, Fernandez DE. The MADS domain factors AGL15 and AGL18 act redundantly as repressors of the floral transition in Arabidopsis. Plant J. 50: 1007-1019 (2007).

Adams-Phillips L, Barry C, Kannan P, Leclercq J, Bouzayen M, Giovannoni J. Evidence that CTR1-mediated ethylene signal transduction in tomato is encoded by a multigene family whose members display distinct regulatory features. Plant Mol. Biol. 54: 387-404 (2004).

Addepalli B, Xu R, Dattaroy T, Li B, Bass WT, Li QQ, Hunt AG. Disease resistance in plants that carry a feedback-regulated yeast poly(A) binding protein gene. Plant Mol. Biol. 61: 383-397 (2006).

Adham AR, Zolman BK, Millius A, Bartel B. Mutations in Arabidopsis acyl-CoA oxidase genes reveal distinct and overlapping roles in beta-oxidation. Plant J. 41: 859-874 (2005).

Adie BA, Perez-Perez J, Perez-Perez MM, Godoy M, Sanchez-Serrano JJ, Schmelz EA, Solano R. ABA is an essential signal for plant resistance to pathogens affecting JA biosynthesis and the activation of defenses in Arabidopsis. Plant Cell 19: 1665-1681 (2007).

Aeschbacher RA, Muller J, Boller T, Wiemken A. Purification of the trehalase GMTRE1 from soybean nodules and cloning of its cDNA. GMTRE1 is expressed at a low level in multiple tissues. Plant Physiol. 119: 489-496 (1999).

Agalou A, Purwantomo S, Overnas E, Johannesson H, Zhu X, Estiati A, de Kam RJ, Engstrom P, Slamet-Loedin IH, Zhu Z, Wang M, Xiong L, Meijer AH, Ouwerkerk PB. A genome-wide survey of HD-Zip genes in rice and analysis of drought-responsive family members. Plant Mol. Biol. 66: 87-103 (2008).

Agarwal M, Hao Y, Kapoor A, Dong CH, Fujii H, Zheng X, Zhu JK. A R2R3 type MYB transcription factor is involved in the cold regulation of CBF genes and in acquired freezing tolerance. J. Biol. Chem. 281: 37636-37645 (2006).

Agarwal M, Sahi C, Katiyar-Agarwal S, Agarwal S, Young T, Gallie DR, Sharma VM, Ganesan K, Grover A. Molecular characterization of rice hsp101: complementation of yeast hsp104 mutation by disaggregation of protein granules and differential expression in indica and japonica rice types. Plant Mol. Biol. 51: 543-553 (2003).

Agerbirk N, Petersen BL, Olsen CE, Halkier BA, Nielsen JK. 1,4-Dimethoxyglucobrassicin in Barbarea and 4-hydroxyglucobrassicin in Arabidopsis and Brassica. J. Agric. Food Chem. 49: 1502-1507 (2001).

Agrawal GK, Abe K, Yamazaki M, Miyao A, Hirochika H. Conservation of the E-function for floral organ identity in rice revealed by the analysis of tissue culture-induced loss-of-function mutants of the OsMADS1 gene. Plant Mol. Biol. 59: 125-135 (2005).

Agrawal GK, Yonekura M, Iwahashi Y, Iwahashi H, Rakwal R. System, trends and perspectives of proteomics in dicot plants. Part III: Unraveling the proteomes influenced by the environment, and at the levels of function and genetic relationships. J. Chromatogr. B. Analyt. Technol. Biomed. Life Sci. 815: 137-145 (2005).

Agrawal S, Kumar A, Srivastava V, Mishra BN. Cloning, expression, activity and folding studies of serine hydroxymethyltransferase: a target enzyme for cancer chemotherapy. J. Mol. Microbiol. Biotechnol. 6: 67-75 (2003).

Aguilar-Martinez JA, Poza-Carrion C, Cubas P. Arabidopsis BRANCHED1 acts as an integrator of branching signals within axillary buds. Plant Cell 19: 458-472 (2007).

Aharon R, Shahak Y, Wininger S, Bendov R, Kapulnik Y, Galili G. Overexpression of a plasma membrane aquaporin in transgenic tobacco improves plant vigor under favorable growth conditions but not under drought or salt stress. Plant Cell 15: 439-447 (2003).

Aharoni A, De Vos CH, Wein M, Sun Z, Greco R, Kroon A, Mol JN, O'Connell AP. The strawberry FaMYB1 transcription factor suppresses anthocyanin and flavonol accumulation in transgenic tobacco. Plant J. 28: 319-332 (2001).

Aharoni A, Dixit S, Jetter R, Thoenes E, Van Arkel G, Pereira A. The SHINE clade of AP2 domain transcription factors activates wax biosynthesis, alters cuticle properties, and confers drought tolerance when overexpressed in Arabidopsis. Plant Cell 16: 2463-2480 (2004).

Aharoni A, Giri AP, Deuerlein S, Griepink F, de Kogel WJ, Verstappen FW, Verhoeven HA, Jongsma MA, Schwab W, Bouwmeester HJ. Terpenoid metabolism in wild-type and transgenic Arabidopsis plants. Plant Cell 15: 2866-2884 (2003).

Ahearn KP, Johnson HA, Weigel D, Wagner DR. NFL1, a Nicotiana tabacum LEAFY-like gene, controls meristem initiation and floral structure. Plant Cell Physiol. 42: 1130-1139 (2001).

Ahlfors R, Brosche M, Kollist H, Kangasjarvi J. Nitric oxide modulates ozone-induced cell death, hormone biosynthesis and gene expression in Arabidopsis thaliana. Plant J. Nov 28 [Epub ahead of print] (2008).

Ahlfors R, Lang S, Overmyer K, Jaspers P, Brosche M, Tauriainen A, Kollist H, Tuominen H, Belles-Boix E, Piippo M, Inze D, Palva ET, Kangasjarvi J. Arabidopsis RADICAL-INDUCED CELL DEATH1 belongs to the WWE protein-protein interaction domain protein family and modulates abscisic acid, ethylene, and methyl jasmonate responses. Plant Cell 16: 1925-1937 (2004).

Ahlfors R, Macioszek V, Rudd J, Brosche M, Schlichting R, Scheel D, Kangasjarvi J. Stress hormone-independent activation and nuclear translocation of mitogen-activated protein kinases in Arabidopsis thaliana during ozone exposure. Plant J. 40: 512-522 (2004).

Ahmad A, Khan I, Anjum NA, Abrol YP, Iqbal M. Role of sulphate transporter systems in sulphur efficiency of mustard genotypes. Plant Sci. 169: 842-846 (2005).

Ahmad M, Galland P, Ritz T, Wiltschko R, Wiltschko W. Magnetic intensity affects cryptochrome-dependent responses in Arabidopsis thaliana. Planta 225: 615-624 (2007).

Ahmad M, Grancher N, Heil M, Black RC, Giovani B, Galland P, Lardemer D. Action spectrum for cryptochrome-dependent hypocotyl growth inhibition in Arabidopsis. Plant Physiol. 129: 774-785 (2002).

Ahmad M, Jarillo JA, Cashmore AR. Chimeric proteins between cr y1 and cr y2 Arabidopsis blue light photoreceptors indicate overlapping functions and varying protein stability. Plant Cell 10: 197-208 (1998).

Ahmad M, Jarillo JA, Smirnova O, Cashmore AR. Cryptochrome blue-light photoreceptors of Arabidopsis implicated in phototropism. Nature 392: 720-723 (1998).

Ahmed SU, Bar-Peled M, Raikhel NV. Cloning and subcellular location of an Arabidopsis receptor-like protein that shares common features with protein-sorting receptors of eukaryotic cells. Plant Physiol. 114: 325-336 (1997).

Ahn IP, Kim S, Lee YH. Vitamin B1 functions as an activator of plant disease resistance. Plant Physiol. 138: 1505-1515 (2005).

Ahn SJ, Shin R, Schachtman DP. Expression of KT/KUP genes in Arabidopsis and the role of root hairs in K+ uptake. Plant Physiol. 134: 1135-1145 (2004).

Ahsan N, Yoon HS, Jo J. Molecular cloning of a BcPGIP cDNA from Brassica campestris and its expression to several stresses. Plant Sci. 169: 1081-1089 (2005).

Aihara Y, Tabata R, Suzuki T, Shimazaki KI, Nagatani A. Molecular basis of the functional specificities of phototropin 1 and 2. Plant J. 56: 364-375 (2008).

Aivalakis G, Dimou M, Flemetakis E, Plati F, Katinakis P, Drossopoulos JB. Immunolocalization of carbonic anhydrase and phosphoenolpyruvate carboxylase in developing seeds of Medicago sativa. Plant Physiol. Biochem. 42: 181-186 (2004).

Ajjawi I, Rodriguez Milla MA, Cushman J, Shintani DK. Thiamin pyrophosphokinase is required for thiamin cofactor activation in Arabidopsis. Plant Mol. Biol. 65: 151-62 (2007).

Akama K, Akihiro T, Kitagawa M, Takaiwa F. Rice (Oryza sativa) contains a novel isoform of glutamate decarboxylase that lacks an authentic calmodulin-binding domain at the C-terminus. Biochim. Biophys. Acta 1522: 143-150 (2001).

Akamatsu T, Hanzawa Y, Ohtake Y, Takahashi T, Nishitani K, Komeda Y. Expression of endoxyloglucan transferase genes in acaulis mutants of Arabidopsis. Plant Physiol. 121: 715-722 (1999).

Al Khateeb WM, Schroeder DF. Overexpression of Arabidopsis damaged DNA binding protein 1A (DDB1A) enhances UV tolerance. Plant Mol. Biol. 70: 371-383 (2009).

Al-Ghazi Y, Muller B, Pinloche S, Tranbarger TJ, Nacry P, Rossignol M, Tardieu F, Doumas P. Temporal responses of Arabidopsis root architecture to phosphate starvation: evidence for the involvement of auxin signalling. Plant Cell Environ. 26: 1053-1066 (2003).

Al-Lahham A, Rohde V, Heim P, Leuchter R, Veeck J, Wunderlich C, Wolf K, Zimmermann M. Biosynthesis of phytochelatins in the fission yeast. Phytochelatin synthesis: a second role for the glutathione synthetase gene of Schizosaccharomyces pombe. Yeast 15: 385-396 (1999).

Alabadí D, Gallego-Bartolome J, Orlando L, García-Carcel L, Rubio V, Martinez C, Frigerio M, Iglesias-Pedraz JM, Espinosa A, Deng XW, Blazquez MA. Gibberellins modulate light signaling pathways to prevent Arabidopsis seedling de-etiolation in darkness. Plant J. 53: 324-335 (2008).

Alabadi D, Gil J, Blazquez MA, Garcia-Martinez JL. Gibberellins repress photomorphogenesis in darkness. Plant Physiol. 134: 1050-1057 (2004).

Albert S, Delseny M, Devic M. BANYULS, a novel negative regulator of flavonoid biosynthesis in the Arabidopsis seed coat. Plant J. 11: 289-299 (1997).

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Albrecht C, Russinova E, Kemmerling B, Kwaaitaal M, de Vries SC. Arabidopsis SOMATIC EMBRYOGENESIS RECEPTOR KINASE proteins serve brassinosteroid-dependent and -independent signaling pathways. Plant Physiol. 148: 611-619 (2008).

Albrecht V, Ingenfeld A, Apel K. Characterization of the snowy cotyledon 1 mutant of Arabidopsis thaliana: the impact of chloroplast elongation factor G on chloroplast development and plant vitality. Plant Mol. Biol. 60: 507-518 (2006).

Albrecht V, Ingenfeld A, Apel K. Snowy cotyledon 2: the identification of a zinc finger domain protein essential for chloroplast development in cotyledons but not in true leaves. Plant Mol. Biol. 66: 599-608 (2008).

Albrecht V, Weinl S, Blazevic D, D'Angelo C, Batistic O, Kolukisaoglu U, Bock R, Schulz B, Harter K, Kudla J. The calcium sensor CBL1 integrates plant responses to abiotic stresses. Plant J. 36: 457-470 (2003).

Alcazar R, Garcia-Martinez JL, Cuevas JC, Tiburcio AF, Altabella T. Overexpression of ADC2 in Arabidopsis induces dwarfism and late-flowering through GA deficiency. Plant J. 43: 425-436 (2005).

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Alexandersson E, Fraysse L, Sjovall-Larsen S, Gustavsson S, Fellert M, Karlsson M, Johanson U, Kjellbom P. Whole gene family expression and drought stress regulation of aquaporins. Plant Mol. Biol. 59: 469-484 (2005).

Alexandersson E, Saalbach G, Larsson C, Kjellbom P. Arabidopsis plasma membrane proteomics identifies components of transport, signal transduction and membrane trafficking. Plant Cell Physiol. 45: 1543-1556 (2004).

Alexandre CM, Hennig L. FLC or not FLC: the other side of vernalization. J. Exp. Bot. 59: 1127-1135 (2008).

Alexandrov NN, Brover VV, Freidin S, Troukhan ME, Tatarinova TV, Zhang H, Swaller TJ, Lu YP, Bouck J, Flavell RB, Feldmann KA. Insights into corn genes derived from large-scale cDNA sequencing. Plant Mol. Biol. 69: 179-194 (2009).

Alexandrov NN, Troukhan ME, Brover VV, Tatarinova T, Flavell RB, Feldmann KA. Features of Arabidopsis genes and genome discovered using full-length cDNAs. Plant Mol. Biol. 60: 69-85 (2006).

Alferez F, Zhong GY, Burns JK. A citrus abscission agent induces anoxia- and senescence-related gene expression in Arabidopsis. J. Exp. Bot. 58: 2451-2462 (2007).

Ali GS, Golovkin M, Reddy AS. Nuclear localization and in vivo dynamics of a plant-specific serine/arginine-rich protein. Plant J. 36: 883-893 (2003).

Ali GS, Prasad KV, Day I, Reddy AS. Ligand-dependent reduction in the membrane mobility of FLAGELLIN SENSITIVE2, an Arabidopsis receptor-like kinase. Plant Cell Physiol. 48: 1601-1611 (2007).

Ali R, Ma W, Lemtiri-Chlieh F, Tsaltas D, Leng Q, von Bodman S, Berkowitz GA. Death don't have no mercy and neither does calcium: Arabidopsis CYCLIC NUCLEOTIDE GATED CHANNEL2 and innate immunity. Plant Cell 19: 1081-1095 (2007).

Ali R, Zielinski RE, Berkowitz GA. Expression of plant cyclic nucleotide-gated cation channels in yeast. J. Exp. Bot. 57: 125-138 (2006).

Ali S, Taylor WC. The 3' non-coding region of a C4 photosynthesis gene increases transgene expression when combined with heterologous promoters. Plant Mol. Biol. 46: 325-333 (2001).

Ali-Rachedi S, Bouinot D, Wagner MH, Bonnet M, Sotta B, Grappin P, Jullien M. Changes in endogenous abscisic acid levels during dormancy release and maintenance of mature seeds: studies with the Cape Verde Islands ecotype, the dormant model of Arabidopsis thaliana. Planta 219: 479-488 (2004).

Alia, Hayashi H, Chen THH, Murata N. Transformation with a gene for choline oxidase enhances the cold tolerance of Arabidopsis during germination and early growth. Plant Cell Environ. 21: 232-239 (1998).

Alia, Hayashi H, Sakamoto A, Murata N. Enhancement of the tolerance of Arabidopsis to high temperatures by genetic engineering of the synthesis of glycinebetaine. Plant J. 16: 155-161 (1998).

Alia, Kondo Y, Sakamoto A, Nonaka H, Hayashi H, Saradhi PP, Chen TH, Murata N. Enhanced tolerance to light stress of transgenic Arabidopsis plants that express the codA gene for a bacterial choline oxidase. Plant Mol. Biol. 40: 279-288 (1999).

Alkhalfioui F, Renard M, Frendo P, Keichinger C, Meyer Y, Gelhaye E, Hirasawa M, Knaff DB, Ritzenthaler C, Montrichard F. A novel type of thioredoxin dedicated to symbiosis in legumes. Plant Physiol. 148: 424-435 (2008).

Alkio M, Tabuchi TM, Wang X, Colon-Carmona A. Stress responses to polycyclic aromatic hydrocarbons in Arabidopsis include growth inhibition and hypersensitive response-like symptoms. J. Exp. Bot. 56: 2983-2994 (2005).

Allan WL, Simpson JP, Clark SM, Shelp BJ. Gamma-hydroxybutyrate accumulation in Arabidopsis and tobacco plants is a general response to abiotic stress: putative regulation by redox balance and glyoxylate reductase isoforms. J. Exp. Bot. 59: 2555-2564 (2008).

Alleman M, Doctor J. Genomic imprinting in plants: observations and evolutionary implications. Plant Mol. Biol. 43: 147-161 (2000).

Allemeersch J, Durinck S, Vanderhaeghen R, Alard P, Maes R, Seeuws K, Bogaert T, Coddens K, Deschouwer K, Van Hummelen P, Vuylsteke M, Moreau Y, Kwekkeboom J, Wijfjes AH, May S, Beynon J, Hilson P, Kuiper MT. Benchmarking the CATMA microarray. A novel tool for Arabidopsis transcriptome analysis. Plant Physiol. 137: 588-601 (2005).

Allen GJ, Kuchitsu K, Chu SP, Murata Y, Schroeder JI. Arabidopsis abi1-1 and abi2-1 phosphatase mutations reduce abscisic acid-induced cytoplasmic calcium rises in guard cells. Plant Cell 11: 1785-1798 (1999).

Allen GJ, Murata Y, Chu SP, Nafisi M, Schroeder JI. Hypersensitivity of abscisic acid-induced cytosolic calcium increases in the Arabidopsis farnesyltransferase mutant era1-2. Plant Cell 14: 1649-1662 (2002).

Allen T, Ingles PJ, Praekelt U, Smith H, Whitelam GC. Phytochrome-mediated agravitropism in Arabidopsis hypocotyls requires GIL1 and confers a fitness advantage. Plant J. 46: 641-648 (2006).

Allen T, Koustenis A, Theodorou G, Somers DE, Kay SA, Whitelam GC, Devlin PF. Arabidopsis FHY3 specifically gates phytochrome signaling to the circadian clock. Plant Cell 18: 2506-2516 (2006).

Allenbach L, Poirier Y. Analysis of the alternative pathways for the beta-oxidation of unsaturated fatty acids using transgenic plants synthesizing polyhydroxyalkanoates in peroxisomes. Plant Physiol. 124: 1159-1168 (2000).

Allnutt GV, Rogers HJ, Francis D, Herbert RJ. A LEAFY-like gene in the long-day plant, Silene coeli-rosa is dramatically up-regulated in evoked shoot apical meristems but does not complement the Arabidopsis lfy mutant. J. Exp. Bot. 58: 2249-2259 (2007).

Almagro A, Lin SH, Tsay YF. Characterization of the Arabidopsis nitrate transporter NRT1.6 reveals a role of nitrate in early embryo development. Plant Cell 20: 3289-3299 (2008).

Almeras E, Stolz S, Vollenweider S, Reymond P, Mene-Saffrane L, Farmer EE. Reactive electrophile species activate defense gene expression in Arabidopsis. Plant J. 34: 205-216 (2003).

Aloni R, Aloni E, Langhans M, Ullrich CI. Role of auxin in regulating Arabidopsis flower development. Planta 223: 315-328 (2006).

Aloni R, Langhans M, Aloni E, Dreieicher E, Ullrich CI. Root-synthesized cytokinin in Arabidopsis is distributed in the shoot by the transpiration stream. J. Exp. Bot. 56: 1535-1544 (2005).

Aloni R, Langhans M, Aloni E, Ullrich CI. Role of cytokinin in the regulation of root gravitropism. Planta 220: 177-182 (2004).

Aloni R, Schwalm K, Langhans M, Ullrich CI. Gradual shifts in sites of free-auxin production during leaf-primordium development and their role in vascular differentiation and leaf morphogenesis in Arabidopsis. Planta 216: 841-853 (2003).

Alonso JM, Stepanova AN, Leisse TJ, Kim CJ, Chen H, Shinn P, Stevenson DK,. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301: 653-657 (2003).

Alonso-Blanco C, Gomez-Mena C, Llorente F, Koornneef M, Salinas J, Martinez-Zapater JM. Genetic and molecular analyses of natural variation indicate CBF2 as a candidate gene for underlying a freezing tolerance quantitative trait locus in Arabidopsis. Plant Physiol. 139: 1304-1312 (2005).

Alsheikh MK, Svensson JT, Randall SK. Phosphorylation regulated ion-binding is a property shared by the acidic subclass dehydrins. Plant Cell Environ. 28: 1114-1122 (2005).

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Chen M, Xu Z, Xia L, Li L, Cheng X, Dong J, Wang Q, Ma Y. Cold-induced modulation and functional analyses of the DRE-binding transcription factor gene, GmDREB3, in soybean (Glycine max L.). J. Exp. Bot. 60: 121-135 (2009).

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Chen S, Glawischnig E, Jorgensen K, Naur P, Jorgensen B, Olsen CE, Hansen CH, Rasmussen H, Pickett JA, Halkier BA. CYP79F1 and CYP79F2 have distinct functions in the biosynthesis of aliphatic glucosinolates in Arabidopsis. Plant J. 33: 923-937 (2003).

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Chen WP, Li PH. Membrane stabilization by abscisic acid under cold aids proline in alleviating chilling injury in maize (Zea mays L.) cultured cells. Plant Cell Environ. 25: 955-962 (2002).

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Chen X, Goodwin SM, Boroff VL, Liu X, Jenks MA. Cloning and characterization of the WAX2 gene of Arabidopsis involved in cuticle membrane and wax production. Plant Cell 15: 1170-1185 (2003).

Chen X, Goodwin SM, Liu X, Chen X, Bressan RA, Jenks MA. Mutation of the RESURRECTION1 locus of Arabidopsis reveals an association of cuticular wax with embryo development. Plant Physiol. 139: 909-919 (2005).

Chen X, Smith MD, Fitzpatrick L, Schnell DJ. In vivo analysis of the role of atTic20 in protein import into chloroplasts. Plant Cell 14: 641-654 (2002).

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Chen Z, Kloek AP, Cuzick A, Moeder W, Tang D, Innes RW, Klessig DF, McDowell JM, Kunkel BN. The Pseudomonas syringae type III effector AvrRpt2 functions downstream or independently of SA to promote virulence on Arabidopsis thaliana. Plant J. 37: 494-504 (2004).

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Kim C, Apel K. Substrate-dependent and organ-specific chloroplast protein import in planta. Plant Cell 16: 88-98 (2004).

Kim C, Ham H, Apel K. Multiplicity of different cell- and organ-specific import routes for the NADPH-protochlorophyllide oxidoreductases A and B in plastids of Arabidopsis seedlings. Plant J. 42: 329-340 (2005).

Kim CH, Jun SS, Hong YN. GmNiR-1, a soybean nitrite reductase gene that is regulated by nitrate and light. Aust. J. Plant Physiol. 28: 1031-1038 (2001).

Kim CM, Park SH, Je BI, Park SH, Park SJ, Piao HL, Eun MY, Dolan L, Han CD. OsCSLD1, a cellulose synthase-like D1 gene, is required for root hair morphogenesis in rice. Plant Physiol. 143: 1220-1230 (2007).

Kim D, Gustin JL, Lahner B, Persans MW, Baek D, Yun DJ, Salt DE. The plant CDF family member TgMTP1 from the Ni/Zn hyperaccumulator Thlaspi goesingense acts to enhance efflux of Zn at the plasma membrane when expressed in Saccharomyces cerevisiae. Plant J. 39: 237-251 (2004).

Kim DH, Kang JG, Yang SS, Chung KS, Song PS, Park CM. A phytochrome-associated protein phosphatase 2A modulates light signals in flowering time control in Arabidopsis. Plant Cell 14: 3043-3056 (2002).

Kim DW, Lee SH, Choi SB, Won SK, Heo YK, Cho M, Park YI, Cho HT. Functional conservation of a root hair cell-specific cis-element in angiosperms with different root hair distribution patterns. Plant Cell 18: 2958-2970 (2006).

Kim DY, Bovet L, Kushnir S, Noh EW, Martinoia E, Lee Y. AtATM3 is involved in heavy metal resistance in Arabidopsis. Plant Physiol. 140: 922-932 (2006).

Kim DY, Bovet L, Maeshima M, Martinoia E, Lee Y. The ABC transporter AtPDR8 is a cadmium extrusion pump conferring heavy metal resistance. Plant J. 50: 207-218 (2007).

Kim EH, Kim YS, Park SH, Koo YJ, Choi YD, Chung YY, Lee IJ, Kim JK. Methyl jasmonate reduces grain yield by mediating stress signals to alter spikelet development in rice. Plant Physiol. 149: 1751-1760 (2009).

Kim EJ, Kwak JM, Uozumi N, Schroeder JI. AtKUP1: an Arabidopsis gene encoding high-affinity potassium transport activity. Plant Cell 10: 51-62 (1998).

Kim GT, Fujioka S, Kozuka T, Tax FE, Takatsuto S, Yoshida S, Tsukaya H. CYP90C1 and CYP90D1 are involved in different steps in the brassinosteroid biosynthesis pathway in Arabidopsis thaliana. Plant J. 41: 710-721 (2005).

Kim H, Hirai MY, Hayashi H, Chino M, Naito S, Fujiwara T. Role of O-acetyl-L-serine in the coordinated regulation of the expression of a soybean seed storage-protein gene by sulfur and nitrogen nutrition. Planta 209: 282-289 (1999).

Kim H, Park M, Kim SJ, Hwang I. Actin filaments play a critical role in vacuolar trafficking at the Golgi complex in plant cells. Plant Cell 17: 888-902 (2005).

Kim HB, Kwon M, Ryu H, Fujioka S, Takatsuto S, Yoshida S, An CS, Lee I, Hwang I, Choe S. The regulation of DWARF4 expression is likely a critical mechanism in maintaining the homeostasis of bioactive brassinosteroids in Arabidopsis thaliana. Plant Physiol. 140: 548-557 (2006).

Kim HB, Schaller H, Goh CH, Kwon M, Choe S, An CS, Durst F, Feldmann KA, Feyereisen R. Arabidopsis cyp51 mutant shows postembryonic seedling lethality associated with lack of membrane integrity. Plant Physiol. 138: 2033-2047 (2005).

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Kim HJ, Triplett BA. Cotton fiber germin-like protein. I. Molecular cloning and gene expression. Planta 218: 516-524 (2004).

Kim HJ, Yano A, Wada Y, Sano H. Properties of a tobacco DNA methyltransferase, NtMET1 and its involvement in chromatin movement during cell division. Ann. Bot. (Lond.) 99: 845-856 (2007).

Kim HS, Delaney TP. Over-expression of TGA5, which encodes a bZIP transcription factor that interacts with NIM1/NPR1, confers SAR-independent resistance in Arabidopsis thaliana to Peronospora parasitica. Plant J. 32: 151-163 (2002).

Kim HS, Park BO, Yoo JH, Jung MS, Lee SM, Han HJ, Kim KE, Kim SH, Lim CO, Yun DJ, Lee SY, Chung WS. Identification of a calmodulin-binding NAC protein as a transcriptional repressor in Arabidopsis. J. Biol. Chem. 282: 36292-36302 (2007).

Kim HU, Huang AH. Plastid lysophosphatidyl acyltransferase is essential for embryo development in Arabidopsis. Plant Physiol. 134: 1206-1216 (2004).

Kim HU, Li Y, Huang AH. Ubiquitous and endoplasmic reticulum-located lysophosphatidyl acyltransferase, LPAT2, is essential for female but not male gametophyte development in Arabidopsis. Plant Cell 17: 1073-1089 (2005).

Kim HU, van Oostende C, Basset GJ, Browse J. The AAE14 gene encodes the Arabidopsis O-succinylbenzoyl-CoA ligase that is essential for phylloquinone synthesis and photosystem-I function. Plant J. 54: 272-283 (2008).

Kim I, Zambryski PC. Cell-to-cell communication via plasmodesmata during Arabidopsis embryogenesis. Curr. Opin. Plant Biol. 8: 593-599 (2005).

Kim J, Jung JH, Reyes JL, Kim YS, Kim SY, Chung KS, Kim JA, Lee M, Lee Y, Narry Kim V, Chua NH, Park CM. microRNA-directed cleavage of ATHB15 mRNA regulates vascular development in Arabidopsis inflorescence stems. Plant J. 42: 84-94 (2005).

Kim J, Lee M, Chalam R, Martin MN, Leustek T, Boerjan W. Constitutive overexpression of cystathionine gamma-synthase in Arabidopsis leads to accumulation of soluble methionine and S-methylmethionine. Plant Physiol. 128: 95-107 (2002).

Kim J, Leustek T. Repression of cystathionine gamma-synthase in Arabidopsis thaliana produces partial methionine auxotrophy and developmental abnormalities. Plant Sci. 151: 9-18 (2000).

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Kim J, Smith JJ, Tian L, Dellapenna D. The evolution and function of carotenoid hydroxylases in Arabidopsis. Plant Cell Physiol. 50: 463-479 (2009).

Kim JC, Lee SH, Cheong YH, Yoo CM, Lee SI, Chun HJ, Yun DJ, Hong JC, Lee SY, Lim CO, Cho MJ. A novel cold-inducible zinc finger protein from soybean, SCOF-1, enhances cold tolerance in transgenic plants. Plant J. 25: 247-259 (2001).

Kim JH, Choi D, Kende H. The AtGRF family of putative transcription factors is involved in leaf and cotyledon growth in Arabidopsis. Plant J. 36: 94-104 (2003).

Kim JH, Durrett TP, Last RL, Jander G. Characterization of the Arabidopsis TU8 glucosinolate mutation, an allele of TERMINAL FLOWER2. Plant Mol. Biol. 54: 671-682 (2004).

Kim JH, Jander G. Myzus persicae (green peach aphid) feeding on Arabidopsis induces the formation of a deterrent indole glucosinolate. Plant J. 49: 1008-1019 (2007).

Kim JH, Lee BW, Schroeder FC, Jander G. Identification of indole glucosinolate breakdown products with antifeedant effects on Myzus persicae (green peach aphid). Plant J. 54: 1015-1026 (2008).

Kim JH, Moon YR, Kim JS, Oh MH, Lee JW, Chung BY. Transcriptomic profile of Arabidopsis rosette leaves during the reproductive stage after exposure to ionizing radiation. Radiat. Res. 168: 267-280 (2007).

Kim JI, Shen Y, Han YJ, Park JE, Kirchenbauer D, Soh MS, Nagy F, Schafer E, Song PS. Phytochrome phosphorylation modulates light signaling by influencing the protein-protein interaction. Plant Cell 16: 2629-2640 (2004).

Kim JK, Bamba T, Harada K, Fukusaki E, Kobayashi A. Time-course metabolic profiling in Arabidopsis thaliana cell cultures after salt stress treatment. J. Exp. Bot. 58: 415-424 (2007).

Kim JM, To TK, Ishida J, Morosawa T, Kawashima M, Matsui A, Toyoda T, Kimura H, Shinozaki K, Seki M. Alterations of lysine modifications on histone H3 N-tail under drought stress conditions in Arabidopsis thaliana. Plant Cell Physiol. 49: 1580-1588 (2008).

Kim JS, Jung HJ, Lee HJ, Kim KA, Goh CH, Woo Y, Oh SH, Han YS, Kang H. Glycine-rich RNA-binding protein7 affects abiotic stress responses by regulating stomata opening and closing in Arabidopsis thaliana. Plant J. 55: 455-466 (2008).

Kim JS, Kim KA, Oh TR, Park CM, Kang H. Functional characterization of DEAD-box RNA helicases in Arabidopsis thaliana under abiotic stress conditions. Plant Cell Physiol. 49: 1563-1571 (2008).

Kim JY, Park SJ, Jang B, Jung CH, Ahn SJ, Goh CH, Cho K, Han O, Kang H. Functional characterization of a glycine-rich RNA-binding protein 2 in Arabidopsis thaliana under abiotic stress conditions. Plant J. 50: 439-451 (2007).

Kim K, Portis AR Jr. Temperature dependence of photosynthesis in Arabidopsis plants with modifications in Rubisco activase and membrane fluidity. Plant Cell Physiol. 46: 522-530 (2005).

Kim KC, Fan B, Chen Z. Pathogen-induced Arabidopsis WRKY7 is a transcriptional repressor and enhances plant susceptibility to Pseudomonas syringae. Plant Physiol. 142: 1180-1192 (2006).

Kim KC, Lai Z, Fan B, Chen Z. Arabidopsis WRKY38 and WRKY62 transcription factors interact with histone deacetylase 19 in basal defense. Plant Cell 20: 2357-2371 (2008).

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Li HC, Chuang K, Henderson JT, Rider SD Jr, Bai Y, Zhang H, Fountain M, Gerber J, Ogas J. PICKLE acts during germination to repress expression of embryonic traits. Plant J. 44: 1010-1022 (2005).

Li HY, Chye ML. Arabidopsis acyl-CoA-binding protein ACBP2 interacts with an ethylene-responsive element-binding protein, AtEBP, via its ankyrin repeats. Plant Mol. Biol. 54: 233-243 (2004).

Li HY, Xiao S, Chye ML. Ethylene- and pathogen-inducible Arabidopsis acyl-CoA-binding protein 4 interacts with an ethylene-responsive element binding protein. J. Exp. Bot. 59: 3997-4006 (2008).

Li J, Brader G, Kariola T, Palva ET. WRKY70 modulates the selection of signaling pathways in plant defense. Plant J. 46: 477-491 (2006).

Li J, Chen X. PAUSED, a putative exportin-t, acts pleiotropically in Arabidopsis development but is dispensable for viability. Plant Physiol. 132: 1913-1924 (2003).

Li J, Chory J. A putative leucine-rich repeat receptor kinase involved in brassinosteroid signal transduction. Cell 90: 929-938 (1997).

Li J, Dai X, Zhao Y. A role for auxin response factor 19 in auxin and ethylene signaling in Arabidopsis. Plant Physiol. 140: 899-908 (2006).

Li J, Hansen BG, Ober JA, Kliebenstein DJ, Halkier BA. A subclade of flavin-monooxygenases involved in aliphatic glucosinolate biosynthesis. Plant Physiol. 148: 1721-1733 (2008).

Li J, Last RL. The Arabidopsis thaliana trp5 mutant has a feedback-resistant anthranilate synthase and elevated soluble tryptophan. Plant Physiol. 110: 51-59 (1996).

Li J, Lease KA, Tax FE, Walker JC. BRS1, a serine carboxypeptidase, regulates BRI1 signaling in Arabidopsis thaliana. Proc. Natl. Acad. Sci. U.S.A. 98: 5916-5921 (2001).

Li J, Li X, Guo L, Lu F, Feng X, He K, Wei L, Chen Z, Qu LJ, Gu H. A subgroup of MYB transcription factor genes undergoes highly conserved alternative splicing in Arabidopsis and rice. J. Exp. Bot. 57: 1263-1273 (2006).

Li J, Mo X, Wang J, Chen N, Fan H, Dai C, Wu P. BREVIS RADIX is involved in cytokinin-mediated inhibition of lateral root initiation in Arabidopsis. Planta 229: 593-603 (2009).

Li J, Nam KH, Vafeados D, Chory J. bin2, a new brassinosteroid-insensitive locus in Arabidopsis. Plant Physiol. 127: 14-22 (2001).

Li J, Ou-Lee TM, Raba R, Amundson RG, Last RL. Arabidopsis flavonoid mutants are hypersensitive to UV-B irradiation. Plant Cell 5: 171-179 (1993).

Li J, Webster M, Dudas B, Cook H, Manfield I, Davies B, Gilmartin PM. The S locus-linked Primula homeotic mutant sepaloid shows characteristics of a B-function mutant but does not result from mutation in a B-function gene. Plant J. 56: 1-12 (2008).

Li J, Webster M, Furuya M, Gilmartin PM. Identification and characterization of pin and thrum alleles of two genes that co-segregate with the Primula S locus. Plant J. 51: 18-31 (2007).

Li J, Yang H, Peer WA, Richter G, Blakeslee J, Bandyopadhyay A, Titapiwantakun B, Undurraga S, Khodakovskaya M, Richards EL, Krizek B, Murphy AS, Gilroy S, Gaxiola R. Arabidopsis H+-PPase AVP1 regulates auxin-mediated organ development. Science 310: 121-125 (2005).

Li J, Zhao J, Rose AB, Schmidt R, Last RL. Arabidopsis phosphoribosylanthranilate isomerase: molecular genetic analysis of triplicate tryptophan pathway genes. Plant Cell 7: 447-461 (1995).

Li JF, Nebenfuhr A. Inter-dependence of dimerization and organelle binding in myosin XI. Plant J. 55: 478-490 (2008).

Li JH, Liu YQ, Lu P, Lin HF, Bai Y, Wang XC, Chen YL. A signaling pathway linking nitric oxide production to heterotrimeric G protein and hydrogen peroxide regulates extracellular calmodulin induction of stomatal closure in Arabidopsis. Plant Physiol. 150: 114-124 (2009).

Li L, Cheng H, Gai J, Yu D. Genome-wide identification and characterization of putative cytochrome P450 genes in the model legume Medicago truncatula. Planta 226: 109-123 (2007).

Li L, Dion E, Richard G, Domingue O, Jean M, Belzile FJ. The Arabidopsis DNA mismatch repair gene PMS1 restricts somatic recombination between homeologous sequences. Plant Mol. Biol. 69: 675-684 (2009).

Li L, Foster CM, Gan Q, Nettleton D, James MG, Myers AM, Wurtele ES. Identification of the novel protein QQS as a component of the starch metabolic network in Arabidopsis leaves. Plant J. 58: 485-498 (2009).

Li L, Hou X, Tsuge T, Ding M, Aoyama T, Oka A, Gu H, Zhao Y, Qu LJ. The possible action mechanisms of indole-3-acetic acid methyl ester in Arabidopsis. Plant Cell Rep. 27: 575-584 (2008).

Li L, Ilarslan H, James MG, Myers AM, Wurtele ES. Genome wide co-expression among the starch debranching enzyme genes AtISA1, AtISA2, and AtISA3 in Arabidopsis thaliana. J. Exp. Bot. 58: 3323-3342 (2007).

Li L, Jean M, Belzile F. The impact of sequence divergence and DNA mismatch repair on homeologous recombination in Arabidopsis. Plant J. 45: 908-916 (2006).

Li L, Kim BG, Cheong YH, Pandey GK, Luan S. A Ca2+ signaling pathway regulates a K+ channel for low-K response in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A. 103: 12625-12630 (2006).

Li L, Santerre-Ayotte S, Boivin EB, Jean M, Belzile F. A novel reporter for intrachromosomal homoeologous recombination in Arabidopsis thaliana. Plant J. 40: 1007-1015 (2004).

Li L, Tutone AF, Drummond RS, Gardner RC, Luan S. A novel family of magnesium transport genes in Arabidopsis. Plant Cell 13: 2761-2775 (2001).

Li L, Xu J, Xu ZH, Xue HW. Brassinosteroids stimulate plant tropisms through modulation of polar auxin transport in Brassica and Arabidopsis. Plant Cell 17: 2738-2753 (2005).

Li L, Zhao Y, McCaig BC, Wingerd BA, Wang J, Whalon ME, Pichersky E, Howe GA. The tomato homolog of CORONATINE-INSENSITIVE1 is required for the maternal control of seed maturation, jasmonate-signaled defense responses, and glandular trichome development. Plant Cell 16: 126-143 (2004).

Li M, Qin C, Welti R, Wang X. Double knockouts of phospholipase D{zeta}1 and {zeta}2 in Arabidopsis affect root elongation during phosphate-limited growth, but do not affect root hair patterning. Plant Physiol. 140: 761-770 (2006).

Li M, Welti R, Wang X. Quantitative profiling of Arabidopsis polar glycerolipids in response to phosphorus starvation. Roles of phospholipases D zeta1 and D zeta2 in phosphatidylcholine hydrolysis and digalactosyldiacylglycerol accumulation in phosphorus-starved plants. Plant Physiol. 142: 750-761 (2006).

Li M, Xu W, Yang W, Kong Z, Xue Y. Genome-wide gene expression profiling reveals conserved and novel molecular functions of the stigma in rice. Plant Physiol. 144: 1797-1812 (2007).

Li P, Ainsworth EA, Leakey AD, Ulanov A, Dicke M, Lozovaya V, Ort DR, Bohnert HJ. Arabidopsis transcript and metabolite profiles: ecotype-specific responses to open-air elevated [CO2]. Plant Cell Environ. 31: 1673-1687 (2008).

Li P, Mane SP, Sioson AA, Robinet CV, Heath LS, Bohnert HJ, Grene R. Effects of chronic ozone exposure on gene expression in Arabidopsis thaliana ecotypes and in Thellungiella halophila. Plant Cell Environ. 29: 854-868 (2006).

Li P, Sioson A, Mane SP, Ulanov A, Grothaus G, Heath LS, Murali TM, Bohnert HJ, Grene R. Response diversity of Arabidopsis thaliana ecotypes in elevated [CO(2)] in the field. Plant Mol. Biol. 62: 593-609 (2006).

Li R, Moore M, King J. Investigating the regulation of one-carbon metabolism in Arabidopsis thaliana. Plant Cell Physiol. 44: 233-241 (2003).

Li RJ, Hua W, Lu YT. Arabidopsis cytosolic glutamine synthetase AtGLN1;1 is a potential substrate of AtCRK3 involved in leaf senescence. Biochem. Biophys. Res. Commun. 342: 119-126 (2006).

Li RZ, Jia XY, Mao X. Ethanol-inducible gene expression system and its applications in plant functional genomics. Plant Sci. 169: 463-469 (2005).

Li S, Blanchoin L, Yang Z, Lord EM. The putative Arabidopsis arp2/3 complex controls leaf cell morphogenesis. Plant Physiol. 132: 2034-2044 (2003).

Li S, Ehrhardt DW, Rhee SY. Systematic analysis of Arabidopsis organelles and a protein localization database for facilitating fluorescent tagging of full-length Arabidopsis proteins. Plant Physiol. 141: 527-539 (2006).

Li S, Fu Q, Huang W, Yu D. Functional analysis of an Arabidopsis transcription factor WRKY25 in heat stress. Plant Cell Rep. 28: 683-693 (2009).

Li S, Lauri A, Ziemann M, Busch A, Bhave M, Zachgo S. Nuclear activity of ROXY1, a glutaredoxin interacting with TGA factors, is required for petal development in Arabidopsis thaliana. Plant Cell 21: 429-441 (2009).

Li SF, Iacuone S, Parish RW. Suppression and restoration of male fertility using a transcription factor. Plant Biotechnol. J. 5: 297-312 (2007).

Li SF, Milliken ON, Pham H, Seyit R, Napoli R, Preston J, Koltunow AM, Parish RW. The Arabidopsis MYB5 transcription factor regulates mucilage synthesis, seed coat development, and trichome morphogenesis. Plant Cell 21: 72-89 (2009).

Li SS, Wang Y, Bjorn LO. Effects of temperature on UV-B-induced DNA damage and photorepair in Arabidopsis thaliana. J. Environ. Sci. (China) 16: 173-176 (2004).

Li W, Chen C, Markmann-Mulisch U, Timofejeva L, Schmelzer E, Ma H, Reiss B. The Arabidopsis AtRAD51 gene is dispensable for vegetative development but required for meiosis. Proc. Natl. Acad. Sci. U.S.A. 101: 10596-10601 (2004).

Li W, Wang R, Li M, Li L, Wang C, Welti R, Wang X. Differential degradation of extraplastidic and plastidic lipids during freezing and post-freezing recovery in Arabidopsis thaliana. J. Biol. Chem. 283: 461-468 (2008).

Li W, Wang Y, Okamoto M, Crawford NM, Siddiqi MY, Glass AD. Dissection of the AtNRT2.1:AtNRT2.2 inducible high-affinity nitrate transporter gene cluster. Plant Physiol. 143: 425-433 (2007).

Li W, Yang X, Lin Z, Timofejeva L, Xiao R, Makaroff CA, Ma H. The AtRAD51C gene is required for normal meiotic chromosome synapsis and double-stranded break repair in Arabidopsis. Plant Physiol. 138: 965-976 (2005).

Li WX, Oono Y, Zhu J, Zhu J, He XJ, Wu JM, Iida K, Lu XY, Cui X, Jin H, Zhu JK. The Arabidopsis NFYA5 transcription factor is regulated transcriptionally and posttranscriptionally to promote drought resistance. Plant Cell 20: 2238-2251 (2008).

Li WZ, Chinnappa CC. Isolation and characterization of PHYC gene from Stellaria longipes: differential expression regulated by different red/far-red light ratios and photoperiods. Planta 220: 318-330 (2004).

Li X, Chanroj S, Wu Z, Romanowsky SM, Harper JF, Sze H. A distinct endosomal Ca2+/Mn2+ pump affects root growth through the secretory process. Plant Physiol. 147: 1675-1689 (2008).

Li X, Cordero I, Caplan J, Molhoj M, Reiter WD. Molecular analysis of 10 coding regions from Arabidopsis that are homologous to the MUR3 xyloglucan galactosyltransferase. Plant Physiol. 134: 940-950 (2004).

Li X, Duan X, Jiang H, Sun Y, Tang Y, Yuan Z, Guo J, Liang W, Chen L, Yin J, Ma H, Wang J, Zhang D. Genome-wide analysis of basic/helix-loop-helix transcription factor family in rice and Arabidopsis. Plant Physiol. 141: 1167-1184 (2006).

Li X, Volrath SL, Nicholl DB, Chilcott CE, Johnson MA, Ward ER, Law MD. Development of protoporphyrinogen oxidase as an efficient selection marker for Agrobacterium tumefaciens-mediated transformation of maize. Plant Physiol. 133: 736-747 (2003).

Li Y, Beisson F, Koo AJ, Molina I, Pollard M, Ohlrogge J. Identification of acyltransferases required for cutin biosynthesis and production of cutin with suberin-like monomers. Proc. Natl. Acad. Sci. U.S.A. 104: 18339-18344 (2007).

Li Y, Beisson F, Ohlrogge J, Pollard M. Monoacylglycerols are components of root waxes and can be produced in the aerial cuticle by ectopic expression of a suberin-associated acyltransferase. Plant Physiol. 144: 1267-1277 (2007).

Li Y, Beisson F, Pollard M, Ohlrogge J. Oil content of Arabidopsis seeds: the influence of seed anatomy, light and plant-to-plant variation. Phytochemistry 67: 904-915 (2006).

Li Y, Dankher OP, Carreira L, Smith AP, Meagher RB. The shoot-specific expression of gamma-glutamylcysteine synthetase directs the long-distance transport of thiol-peptides to roots conferring tolerance to mercury and arsenic. Plant Physiol. 141: 288-298 (2006).

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Li Y, Dhankher OP, Carreira L, Lee D, Chen A, Schroeder JI, Balish RS, Meagher RB. Overexpression of phytochelatin synthase in Arabidopsis leads to enhanced arsenic tolerance and cadmium hypersensitivity. Plant Cell Physiol. 45: 1787-1797 (2004).

Li Y, Jones L, McQueen-Mason S. Expansins and cell growth. Curr. Opin. Plant Biol. 6: 603-610 (2003).

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Li Z, Mouille G, Kosar-Hashemi B, Rahman S, Clarke B, Gale KR, Appels R, Morell MK. The structure and expression of the wheat starch synthase III gene. Motifs in the expressed gene define the lineage of the starch synthase III gene family. Plant Physiol. 123: 613-624 (2000).

Li Z, Xing A, Moon BP, Burgoyne SA, Guida AD, Liang H, Lee C, Caster CS, Barton JE, Klein TM, Falco SC. A Cre/loxP-mediated self-activating gene excision system to produce marker gene free transgenic soybean plants. Plant Mol. Biol. 65: 329-341 (2007).

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